Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g21660 | OGI:03032900 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:12362127-12365893 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGTGTCCGCTCGTCGCCGCTGCCAACGAGGCTGCATCCGCTCGTCGCCACCGCTGCCGCCGACGATGCCGCGTCCGCTCGTCGCCGCCGACGAGGCAGCATCCGACCGCTCATCGCCGACAAGAACCCCGGCGTCCGCTCATCGCCTCGCCCGTCGCCGATGCCGCGTTCGCTCATCGCCTCCGCCACCGCCGATGCCGCGTCCGCTCGTCACCTCCCCAGCTGCCACCACCGCCGCCGCGTTCGCTCGTCGTCACCGCGCCGCCGCGTGGTGGTGGAGCGGGAGGGAGGTGCGGGGAGGAGCGGGAGAAGGCCGAGGGGTACAGGAGAGAGATGGGGGAGAACCGTCTGGGAGGGGATGGCGGAAAAAAATCTGGTGCAGACCGGATGCAAAACAGCAGTCCGTGCGCCCCGACGCGGATGCATGACGCGTGGATGAGGCGCTCATCCGACGGCCGGCCCACACAAGCGGGTCCGCATCCTGCACGGCTCGACTCAGGTCGTTCTCCCTCAGCTCGGCTTGCGCGGCTCAGGATTAGATTGGGTAGGGCGTGATTAGAGGCGGACGATTAGAGCAAAACAGATTCGCTACATGGCAGGACGAGGAGTCCAGCAGAAGAGCACAGGCGCCGCCGAGCTTCTGGTGCCGTCGTCTCATCTGATGCAACCTTTGCCTGCCGTAGCGCACGACATGGCAGGACAATCTTCACATGAACACGATGTAATCGTTGGGGATCATGGAGCCGATGGCAAGCAGAGAACGCAGGTACATTGCCTAGCTAATTGACTCATGATTTTTCATCAGTACATGCATGCATGATCGTGAGTGATCGTCTTACATGCCCTCATCGCAAATACTGATGTGTGGCTAATACGTACTGATGTGTGATCATATCGTGCATGATCATCTTGCACAGATCTCCGAGTTTATGACCATGGAAGAAGATGTTGCCGGCGCTATCGATGCCAACGCTAATGGTGATGACAACACACTATGTCGCATAGTACTTGAAGAGATGGCAGATAAAGCACCAAATCAGGTAACGATAATTTAATAGCAAATTCGATGGAAAACAGAATATTTCATACTGTGGTAATATAACTCATTTATCGTACAACAGGCCAATGATAAAGTTGCACAAACTTTGATCTTGCCTCAAGTTGGAATGGCTTTTGATTCAGAGCAGAAAGTGTATGATATGTACAACACCTATGCCGGGAAGATTGGGTTCAGTATTAGAAAGAGCCAAGCAAAGCACCGAGTCGATGGAACTATATACCAGAAATATATAGTTTGTAGTAACCAAGGACAACGACAGACTAAGTCATCACTAGACACTACTAGGACGAGTTGTGATGCTTGTGTTCAGTTTAGTATTTGTCGAAAGGGAATTTGGACAGTGCAAAAAGTTGTACTTGAACACAACCATTGTCTTGTTAGTCCAAATAAGTCGCACAAGGTGAGGTCCCAACGGCGTGTTATAGAAGCAGATAGGCAGCTAATTGGCCAAATAAGGGAAGCCGGGATGAAACCAGCGCAAGTGTATGAGTTCATGAAGGAGTGGTATGGAGGAGCTGACAAAGTACCATTCTCAAAGATGGATTGCAATAATGAGATCGGTCGCGAACGCAAGAAGTACTTAGAATCCAATGACACACAAACATTGTTGGAATAGTTGAAGAATAAGCAATTAGAGGATCCTACATTTTTTTACGCCATCCAAATAGACAAGGAAGATGGTCGGATAGCTAATTTCTTTTGGGCAGATGGTCAATCTATCATGGATTACTCCTGTTTTGGTGATGCTGTGTCATTCGACACCACATTTGATACTAATAAGTTTGAAATGCCTTTTGCTCCACTCCTTGGAACCAACCATCACAAGCAGACTGTAATTTTTGGTGCTGCGTTGTTATTTAATCAAACTATTGAATCATTTGTTTAGCTCTTTGAAACTTTTCTAACATCAATGTCAGGAAAGCATCCAAGCACAATTTTCACTGATCAAGACGCGGCCATGGCAGCAGCAATTGCTTTAGTATTCCCAAACACAAGACACCGTCTTTGTTTGTGGCACATTTATCTAAATGGTGGTAAAAATCTTGGTCATGTCATTCATAAGCATCCTAACAAGTTTCTAACTGATTTTAAGAAATGTGTCTATGAGGAGAAAGCGGAGTATCATTTCAACAAGATGTGGCATGAATTGTTGAGTGAATACAAGCTTGAGGATAACGTATGGATGTCAAATCTATATAGGTTGAAGGAAAGTGGGCTATTGTCTTTCGTGACTCTTTTACAGCTGATATGACCTCGACTCAAAGGAGCGAAGGTATGAATAATGTCTTCAAGAAAAGATTTCGTAGGAAACTTGGTCTTTCTGAGCTCCTTGTAGAATGTGATAAGGTTGCTGCCAGTCTTCGTGAAAATGAGTTGGATGCAGATTTTAAGTCAAGAAACTCGAGCCCCGTTACTTGCATCCCAAATTTACCTATGTTGAAGACCGCAGCTGACTCATATACAAGGAAGATGTATTCAGAGTTTGAAGAGGAGTTTACAAAACAATTTTCATTGTCATGTAAGTTGTTGCAAACTGAGGGATCAATATTGACATTCATGGTTATGCCCATGGAATCAGATCAGGAAGCAACAATTGTGTATAACACTGCGGATATGACCATTACATGTTCTTGCAGAACGTACGAGTCCATTGGTATGTATGCATACTTTAAATCGCATTATAATTTTGTTTATACAAACATCTGAAAAATGGCATCCACATCTTATAGGTATACTGTGCAAGCATGCCCTCAGAGTCTTCAATATGAATGAAGTTTTCACTATGCCATCTCAATATATACTCAACAGGTGGACAAAATATGCGAAAAAAGGATTTAATATTGATAAACAAGGAAGTGAGAAGGAAACTTTGAAAACACATGCTGCACGTATCTCTCGAAAGGCAACATCCATCGCTTTGAAATGTTCAGTTTCGAAAGAACTTCTTGATGATTTGGAGAAAGCCATAAATAATTTGGACTTGGAGGCAGATAGTTCTCTAAGCAAGATGCAAGAAAAAACATGTGAGGTTCCTCTAAATTCAAATGACTGTGTTATGGACACATTAAATGGTGCAATATCAATTAGAGTTCCTCGAGTGGTCAAAGGCCCAAAGAGTAGACGATCAAAAGATGCAGTTGAAAAGAAGAAACGGAAGAAAACAAAAACTGCTAAGAATAAAGGTGCTGATCCTACCCATTCCGGCATGTTTATTCCCATTGTATGCTTGTATAATTAATTTTTTTTATACTCTGATATTTTGTATGTTTGAACTATATAGGAGAAGATCTAAATAATGCATCAGAAGATGAAGATGAAGATGTTGGTGATGTGTGTGGGCAATCTTCGACCATGGCTGCAAATGATGTGTGTGGGCAATCCTCGACCATGGCTGCATATGATGTGTATGGGCAATCCTCGACAATGGCTGCATATGATGGGTTTGGGCAATCCTCGACCATGGATGCTCCTTTAATCCAAGGCGGATTTACAAGTCTTTTATTTGGAGTTCAGCGAGATTCAGCCATGGCTGCTAGAAAGTTACATTTCAATTAATAGCATTTGGCTCAACCTACAATGAGTAGGCTTTTTTTGAATAGATTTTGGTGTATCCATGAACCTGTACTCTTTTACCGTGTTGCACTATATTTTATTTTCATTTTGCATTGTGTTACACTAAACTATCATTGACGTTGTCAGTTCT
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| CDS seq | ATGCCGTGTCCGCTCGTCGCCGCTGCCAACGAGGCTGCATCCGCTCGTCGCCACCGCTGCCGCCGACGATGCCGCGTCCGCTCGTCGCCGCCGACGAGGCAGCATCCGACCGCTCATCGCCGACAAGAACCCCGGCGTCCGCTCATCGCCTCGCCCGTCGCCGATGCCGCGTTCGCTCATCGCCTCCGCCACCGCCGATGCCGCGTCCGCTCGTCACCTCCCCAGCTGCCACCACCGCCGCCGCGTTCGCTCGTCGTCACCGCGCCGCCGCGTGGTGGTGGAGCGGGAGGGAGGTGCGGGGAGGAGCGGGAGAAGGCCGAGGGGTACAGGAGAGAGATGGGGGAGAACCGTCTGGGAGGGGATGGCGGAAAAAAATCTGGTGCAGACCGGATGCAAAACAGCAGTCCGTGCGCCCCGACGCGGATGCATGACGCGTGGATGAGGCGCTCATCCGACGGCCGGCCCACACAAGCGGGTCCGCATCCTGCACGGCTCGACTCAGCGCACGACATGGCAGGACAATCTTCACATGAACACGATGTAATCGTTGGGGATCATGGAGCCGATGGCAAGCAGAGAACGCAGATCTCCGAGTTTATGACCATGGAAGAAGATGTTGCCGGCGCTATCGATGCCAACGCTAATGGTGATGACAACACACTATGTCGCATAGTACTTGAAGAGATGGCAGATAAAGCACCAAATCAGGCCAATGATAAAGTTGCACAAACTTTGATCTTGCCTCAAGTTGGAATGGCTTTTGATTCAGAGCAGAAAGTGTATGATATGTACAACACCTATGCCGGGAAGATTGGGTTCAGTATTAGAAAGAGCCAAGCAAAGCACCGAGTCGATGGAACTATATACCAGAAATATATAGTTTGTAGTAACCAAGGACAACGACAGACTAAGTCATCACTAGACACTACTAGGACGAGTTGTGATGCTTGTGTTCAGTTTAGTATTTGTCGAAAGGGAATTTGGACAGTGCAAAAAGTTGTACTTGAACACAACCATTGTCTTGTTAGTCCAAATAAGTCGCACAAGGTGAGGTCCCAACGGCGTGTTATAGAAGCAGATAGGCAGCTAATTGGCCAAATAAGGGAAGCCGGGATGAAACCAGCGCAAGTGTATGAGTTCATGAAGGAGTGGTATGGAGGAGCTGACAAAGTTGAAGGAAAGTGGGCTATTGTCTTTCGTGACTCTTTTACAGCTGATATGACCTCGACTCAAAGGAGCGAAGGTATGAATAATGTCTTCAAGAAAAGATTTCGTAGGAAACTTGGTCTTTCTGAGCTCCTTGTAGAATGTGATAAGGTTGCTGCCAGTCTTCGTGAAAATGAGTTGGATGCAGATTTTAAGTCAAGAAACTCGAGCCCCGTTACTTGCATCCCAAATTTACCTATGTTGAAGACCGCAGCTGACTCATATACAAGGAAGATGTATTCAGAGTTTGAAGAGGAGTTTACAAAACAATTTTCATTGTCATGTATACTGTGCAAGCATGCCCTCAGAGTCTTCAATATGAATGAAGTTTTCACTATGCCATCTCAATATATACTCAACAGGTGGACAAAATATGCGAAAAAAGGATTTAATATTGATAAACAAGGAAGTGAGAAGGAAACTTTGAAAACACATGCTGCACGTATCTCTCGAAAGGCAACATCCATCGCTTTGAAATGTTCAGTTTCGAAAGAACTTCTTGATGATTTGGAGAAAGCCATAAATAATTTGGACTTGGAGGCAGATAGTTCTCTAAGCAAGATGCAAGAAAAAACATGTGAGGTTCCTCTAAATTCAAATGACTGTGTTATGGACACATTAAATGGTGCAATATCAATTAGAGTTCCTCGAGTGGTCAAAGGCCCAAAGAGTAGACGATCAAAAGATGCAGTTGAAAAGAAGAAACGGAAGAAAACAAAAACTGCTAAGAATAAAGGAGAAGATCTAAATAATGCATCAGAAGATGAAGATGAAGATGTTGGTGATGTGTGTGGGCAATCTTCGACCATGGCTGCAAATGATGTGTGTGGGCAATCCTCGACCATGGCTGCATATGATGTGTATGGGCAATCCTCGACAATGGCTGCATATGATGGGTTTGGGCAATCCTCGACCATGGATGCTCCTTTAATCCAAGGCGGATTTACAAGTCTTTTATTTGGAGTTCAGCGAGATTCAGCCATGGCTGCTAGAAAGTTACATTTCAATTAA
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| Protein seq | MPCPLVAAANEAASARRHRCRRRCRVRSSPPTRQHPTAHRRQEPRRPLIASPVADAAFAHRLRHRRCRVRSSPPQLPPPPPRSLVVTAPPRGGGAGGRCGEEREKAEGYRREMGENRLGGDGGKKSGADRMQNSSPCAPTRMHDAWMRRSSDGRPTQAGPHPARLDSAHDMAGQSSHEHDVIVGDHGADGKQRTQISEFMTMEEDVAGAIDANANGDDNTLCRIVLEEMADKAPNQANDKVAQTLILPQVGMAFDSEQKVYDMYNTYAGKIGFSIRKSQAKHRVDGTIYQKYIVCSNQGQRQTKSSLDTTRTSCDACVQFSICRKGIWTVQKVVLEHNHCLVSPNKSHKVRSQRRVIEADRQLIGQIREAGMKPAQVYEFMKEWYGGADKVEGKWAIVFRDSFTADMTSTQRSEGMNNVFKKRFRRKLGLSELLVECDKVAASLRENELDADFKSRNSSPVTCIPNLPMLKTAADSYTRKMYSEFEEEFTKQFSLSCILCKHALRVFNMNEVFTMPSQYILNRWTKYAKKGFNIDKQGSEKETLKTHAARISRKATSIALKCSVSKELLDDLEKAINNLDLEADSSLSKMQEKTCEVPLNSNDCVMDTLNGAISIRVPRVVKGPKSRRSKDAVEKKKRKKTKTAKNKGEDLNNASEDEDEDVGDVCGQSSTMAANDVCGQSSTMAAYDVYGQSSTMAAYDGFGQSSTMDAPLIQGGFTSLLFGVQRDSAMAARKLHFN |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g21660 | LOC_Os03g21660.1 | Chr03 | 12362127 | 12365893 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGTGTCCGCTCGTCGCCGCTGCCAACGAGGCTGCATCCGCTCGTCGCCACCGCTGCCGCCGACGATGCCGCGTCCGCTCGTCGCCGCCGACGAGGCAGCATCCGACCGCTCATCGCCGACAAGAACCCCGGCGTCCGCTCATCGCCTCGCCCGTCGCCGATGCCGCGTTCGCTCATCGCCTCCGCCACCGCCGATGCCGCGTCCGCTCGTCACCTCCCCAGCTGCCACCACCGCCGCCGCGTTCGCTCGTCGTCACCGCGCCGCCGCGTGGTGGTGGAGCGGGAGGGAGGTGCGGGGAGGAGCGGGAGAAGGCCGAGGGGTACAGGAGAGAGATGGGGGAGAACCGTCTGGGAGGGGATGGCGGAAAAAAATCTGGTGCAGACCGGATGCAAAACAGCAGTCCGTGCGCCCCGACGCGGATGCATGACGCGTGGATGAGGCGCTCATCCGACGGCCGGCCCACACAAGCGGGTCCGCATCCTGCACGGCTCGACTCAGCGCACGACATGGCAGGACAATCTTCACATGAACACGATGTAATCGTTGGGGATCATGGAGCCGATGGCAAGCAGAGAACGCAGATCTCCGAGTTTATGACCATGGAAGAAGATGTTGCCGGCGCTATCGATGCCAACGCTAATGGTGATGACAACACACTATGTCGCATAGTACTTGAAGAGATGGCAGATAAAGCACCAAATCAGGCCAATGATAAAGTTGCACAAACTTTGATCTTGCCTCAAGTTGGAATGGCTTTTGATTCAGAGCAGAAAGTGTATGATATGTACAACACCTATGCCGGGAAGATTGGGTTCAGTATTAGAAAGAGCCAAGCAAAGCACCGAGTCGATGGAACTATATACCAGAAATATATAGTTTGTAGTAACCAAGGACAACGACAGACTAAGTCATCACTAGACACTACTAGGACGAGTTGTGATGCTTGTGTTCAGTTTAGTATTTGTCGAAAGGGAATTTGGACAGTGCAAAAAGTTGTACTTGAACACAACCATTGTCTTGTTAGTCCAAATAAGTCGCACAAGGTGAGGTCCCAACGGCGTGTTATAGAAGCAGATAGGCAGCTAATTGGCCAAATAAGGGAAGCCGGGATGAAACCAGCGCAAGTGTATGAGTTCATGAAGGAGTGGTATGGAGGAGCTGACAAAGTTGAAGGAAAGTGGGCTATTGTCTTTCGTGACTCTTTTACAGCTGATATGACCTCGACTCAAAGGAGCGAAGGTATGAATAATGTCTTCAAGAAAAGATTTCGTAGGAAACTTGGTCTTTCTGAGCTCCTTGTAGAATGTGATAAGGTTGCTGCCAGTCTTCGTGAAAATGAGTTGGATGCAGATTTTAAGTCAAGAAACTCGAGCCCCGTTACTTGCATCCCAAATTTACCTATGTTGAAGACCGCAGCTGACTCATATACAAGGAAGATGTATTCAGAGTTTGAAGAGGAGTTTACAAAACAATTTTCATTGTCATGTATACTGTGCAAGCATGCCCTCAGAGTCTTCAATATGAATGAAGTTTTCACTATGCCATCTCAATATATACTCAACAGGTGGACAAAATATGCGAAAAAAGGATTTAATATTGATAAACAAGGAAGTGAGAAGGAAACTTTGAAAACACATGCTGCACGTATCTCTCGAAAGGCAACATCCATCGCTTTGAAATGTTCAGTTTCGAAAGAACTTCTTGATGATTTGGAGAAAGCCATAAATAATTTGGACTTGGAGGCAGATAGTTCTCTAAGCAAGATGCAAGAAAAAACATGTGAGGTTCCTCTAAATTCAAATGACTGTGTTATGGACACATTAAATGGTGCAATATCAATTAGAGTTCCTCGAGTGGTCAAAGGCCCAAAGAGTAGACGATCAAAAGATGCAGTTGAAAAGAAGAAACGGAAGAAAACAAAAACTGCTAAGAATAAAGGAGAAGATCTAAATAATGCATCAGAAGATGAAGATGAAGATGTTGGTGATGTGTGTGGGCAATCTTCGACCATGGCTGCAAATGATGTGTGTGGGCAATCCTCGACCATGGCTGCATATGATGTGTATGGGCAATCCTCGACAATGGCTGCATATGATGGGTTTGGGCAATCCTCGACCATGGATGCTCCTTTAATCCAAGGCGGATTTACAAGTCTTTTATTTGGAGTTCAGCGAGATTCAGCCATGGCTGCTAGAAAGTTACATTTCAATTAA
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| Protein seq | MPCPLVAAANEAASARRHRCRRRCRVRSSPPTRQHPTAHRRQEPRRPLIASPVADAAFAHRLRHRRCRVRSSPPQLPPPPPRSLVVTAPPRGGGAGGRCGEEREKAEGYRREMGENRLGGDGGKKSGADRMQNSSPCAPTRMHDAWMRRSSDGRPTQAGPHPARLDSAHDMAGQSSHEHDVIVGDHGADGKQRTQISEFMTMEEDVAGAIDANANGDDNTLCRIVLEEMADKAPNQANDKVAQTLILPQVGMAFDSEQKVYDMYNTYAGKIGFSIRKSQAKHRVDGTIYQKYIVCSNQGQRQTKSSLDTTRTSCDACVQFSICRKGIWTVQKVVLEHNHCLVSPNKSHKVRSQRRVIEADRQLIGQIREAGMKPAQVYEFMKEWYGGADKVEGKWAIVFRDSFTADMTSTQRSEGMNNVFKKRFRRKLGLSELLVECDKVAASLRENELDADFKSRNSSPVTCIPNLPMLKTAADSYTRKMYSEFEEEFTKQFSLSCILCKHALRVFNMNEVFTMPSQYILNRWTKYAKKGFNIDKQGSEKETLKTHAARISRKATSIALKCSVSKELLDDLEKAINNLDLEADSSLSKMQEKTCEVPLNSNDCVMDTLNGAISIRVPRVVKGPKSRRSKDAVEKKKRKKTKTAKNKGEDLNNASEDEDEDVGDVCGQSSTMAANDVCGQSSTMAAYDVYGQSSTMAAYDGFGQSSTMDAPLIQGGFTSLLFGVQRDSAMAARKLHFN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.531714 | 0.477253 | 0.053735 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0164400 | SBH | 1.428469 | 1.610354 | 0.751788 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0164400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009390 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011240 | SBH | 0.643070 | 3.513811 | 1.855230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011260 | SBH | 4.373730 | 6.217415 | 4.193626 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011220 | SBH | 0.795520 | 0.389736 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016150 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0203900 | RBH | 0.0042745 | 0 | 0.0036115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016030 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0139700 | SBH | 9.42459 | 24.599949 | 1.4656195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0011130 | SBH | 0.540030 | 0.241013 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011210 | SBH | 1.194686 | 12.219278 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011160 | SBH | 3.136905 | 2.345608 | 0.964813 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0011090 | SBH | 2.855252 | 13.420892 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016100 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010950 | SBH | 4.818470 | 34.130394 | 4.036411 |
