Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0011260 | OGI:03022230 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:8287934-8293175 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgatcctccgccgtccgctgggctccgcctcggagatccggcctcatccgcctcgtcgtctcctctcctcctcccccactcgcgtcgcgtctcctttctttaattgcttctctctcttctcccaattgcagtcctctCcccccccactaatcccacccggtaatccctctcacgatgaacggccgcggcggcgattctccggcgacgaattgctgcaggggcggttcttcttcttcgtcttcgtcttggcgccggtcgatgtgggtctggtcgttgagtttgtatgcgatttgaccgctcccacgcacctgtggcgtagttggttgcggtgcaactgttcgagctattgactgtttggctggctctctcctcggcgttattctgtggccgtttgggggattgggagtattggaatcctactcttccaggtacccatgataataagttcttccctccaaaagaattcttttcttgaccatttcatcttgccttttggagttttgttgacctgggctaaagttcacttctgtctttgcttaatatgcgtgtgggagtagagtgttctgcatgctataaatggaaggtttcttttttgtcatcgtgcatggacagggctaagcgctcgaacagttttggagtgtttgaccgttttatgtgtgtgagaagtggatccctggggattatatgtgttatttctaggcttgcagcggaataaggtttattgttggaaactttctttctaagatcttgttaatttcattgatgggactagtgcacattcaacaatagtaagttttagaaaaggaacaacaaaggtgcactttcaatatgactaggatgtttgctctgcactttagcccctatagtttcctggacacgctaaaaaaacgcccttcacacttatcttaccttatactaaagccattaaacttaagggattttttagacaatttcttgttttatctcctagagctcacaactaggtgctttaacctccgaccagtgcaccgttcatctccatttttagggattaatcagccactttttgtttaatcatccgactaatcgtccgcatattgcacttgattatcatttaaatatcttttatgaacttcatcttcaagatgtttaagaatattcacaccacagagtacttctcttgatgctcataaattagcagttccagtttgatattaaagtttttagtcaccatatacctttaacttcccaatctaactttgttaagatccttaaattatgtactttatggaaaatcaataaataattcaggtaaatacgatctgttttttgtttttgcattatccaaatagttgttccagataccttttcggtatccatatgtccatatttacttactgcctgagtaactgagtactttttctcggtaatttcatatgtttttgctaagctaaggttttgggcttataactgtcgagtcattacagttttcctttacaagatatgatgatttttcccccaatatggcaatatctaatcattaccttcggattttggaccagttctcctaagttcttcacaggaacaagtctgcaatcaggatggtttctgaagtctttgctaactttgagcttagtgacttgatgggtaattgattctcttgggtgttgttgcatttgtgctgtaacgtggataggagtcatggaaggtgtggtaaccagttcagttggtgaaccaaatcaagacaatgagccaagggattcttcaatagaacttcccagagtcattactgacatggagacttcagccatgcatgatcctgaagctcaaaagctaattggacatgaagctgatactgaattaacgccttatgaaggaatggaatttgagtctgaagatgctgcgagggatttctacagcaaatatgcaagacatgcaggttttagaattcgaatcagcaggtacactcgttctagacgtgataattcaataatttctcgtcgtattgtctgctcaaaagaggggtttcatgaaactcgtgattgtgaaaacctccatgtggaccagaaacagcaagcaagggtaggaactagagttggttgcaaggccatgttaatgattaaaaagtttgggcctgacaaatgggttgttaccaaattcataaaaatccataatcatggaccggttccaccaagaaaacctcatgctggagaacatcatgattgtgatctaatggaaaatccacattctattgaggtggaccctattgatgagccagtcgagggtatggaatttgaatctgaagaagctgctaaattattctatattaactatgcgagggttaatggtttccgtgcacgtattagcaggtactgccgttcaagacgtgataattcaatcatttcacgccagatcgtgtgttccaaggaaggcttccgtgaggttcgagccagaaaagatattacagatggaggcaaaacaacgaagcgccctagaatgataacaagagttggatgcaaagctatgattgtagtgaaaaggatgaactctggaaaatggatggtttctaaatttgagaaggagcataaccattctttgttatcttctagagcagtccctattacatcaaatgattcttctagagaagttattgattttgctgcaacgagtaatgatcctaatgaagtaaaggctgaaggatgtagcacaggaattcaatgtaattctacagattcactaactgtcctttacaaccatctatgtcaggaagccataaaatttgcaaaagaagggtcagttacagaagaaatttaccatgtggcaatgaatgccttgaaagaggctgcagagaaggtttctgaagtcaaaaggagtcacccgacaatgtcacagagtaaacatgaagttatgcaaatggaaactatgagtgcttcgcaatgttcaaatgatgacaaacagaaaacaatgacaccacagctcaagtttttgcaagagcccagtcccagtcttgtgctaataccaaccaaccttttgactcattcaagctcgaattgtgctgacaatattccactctcatgtgatttaactataaatggtaactatgttatgataatgataagctaatccattgctttgttagtgctttctccacaccgaatgatgttgggataattgttttatttgtaactgttgcttttgtatcaacagcgggggaagtcaagcatgtatcagaaagttcttgtttggctgcgaacagaaaggaagactcttcgcagaaatcccaggttacaaattacctgcttgcttatatgtcatactgttactaagggcttgtttggcacagctccagctccagcttcaccccttctggagctggagctcagccaaacagtttcggctccaccaaaactgggagtggagctgagtggagctctctcacaaaatgaactagagttgtggagctgggtttaggcagctccacaactccactccagactcaactcctggagttaaatttaggagttggagctataccaaacaggccctaatatacctagacgatttgtgtattctgtattggactagaaagatcttatgcgtagttctgaccgcggattccacttgtaatcaagccttacagggaaaggatgaaaggtttcatgtactttctaaagaaactacggttgctattcctgcgatacctctcacgctgtacatgcctataatgaagaatccaactggagattctgcaggtaatccatttccttctgctgtttacaggaaataagtgtaaaagtaatatttaaaattctagatagaaattacagatgcatcagtttagaaatctattagatatttatgcctgtcaattgttttcttcatcatatgtggcaagataagatagtaagtttacaacactaaaattttagaaatgacccaataattatatgtttagtaatgcctcttgacaccattttcttttgaaggaacaagaatattcgtgtgtggtctgttgtcctcatctgcaaaaatttaccaattgttttgcctactatagtagtttgcctgacaatttagttcgatagatcttgaaactcttcagtttggcatttctttgtttctttggaatgataggtggcttggagcattgtgtttatctgggttactttttttcttttttgcaatccaagaacataagtcatttaggatacttaataaagcttgtatagttgtgcaaatatggttataattcataccattgctggtagctttcaaaaagaggttatatcatttctagtgaatcactgtgagtatttactatcataaagcatttgcactgtacttgttaaaacatttactagtattatttgttttcaattccccagcgatcacatgagtgcttactcatcatcataaagcttttcatcatttagtcgatttccctacttgataactatctaccagtggatcttgattgattgctacctgccgttagaatgctctcctgacatcttcccattttcctggaatgcagatggccaatacaggttgttggccgctcctattgaagcagttccaatttcataccgtcctgcagaacccatccaacaaccacacggaagttttcctaattcagggccactacccggttttctacctaaactgtacaaacgaggaaaaggtccaaactcgctggtgcatgctactgctcttgcttgtggtgctcgtgtcgtgcctcctgaggaggctgcctcgctgatcaaggctattgagtccaagatcagatctggaggagccacaatagcaaaattgccttcaagcagcttgacacctctaattcctgaggtcgcctctatgtcatcttctagtgaagatgatgaggaaaatgaccacagtgagccactgatggcgagtgttgaacacaactgccatgatcagagctctgaggaaatgaagttggaggctgatccaccatcagagttggaaactgaagctgagaattgttctgcgcagccagaaaatgaaaacaacggtcctactcattgctgacaactgagaagtgagaactgaagtattgaagctttctgaaatcaaagccccacaaggtagtgattatatatatactgtaaattttgagcatttacataagattggatttaggattctaacagcttgtctcacttgaattatagattctaattgtgataactcaaataatttacttcaataaaggacttgtaaagagggtcgccttgctgttac
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| CDS seq | atggaaggtgtggtaaccagttcagttggtgaaccaaatcaagacaatgagccaagggattcttcaatagaacttcccagagtcattactgacatggagacttcagccatgcatgatcctgaagctcaaaagctaattggacatgaagctgatactgaattaacgccttatgaaggaatggaatttgagtctgaagatgctgcgagggatttctacagcaaatatgcaagacatgcaggttttagaattcgaatcagcaggtacactcgttctagacgtgataattcaataatttctcgtcgtattgtctgctcaaaagaggggtttcatgaaactcgtgattgtgaaaacctccatgtggaccagaaacagcaagcaagggtaggaactagagttggttgcaaggccatgttaatgattaaaaagtttgggcctgacaaatgggttgttaccaaattcataaaaatccataatcatggaccggttccaccaagaaaacctcatgctggagaacatcatgattgtgatctaatggaaaatccacattctattgaggtggaccctattgatgagccagtcgagggtatggaatttgaatctgaagaagctgctaaattattctatattaactatgcgagggttaatggtttccgtgcacgtattagcaggtactgccgttcaagacgtgataattcaatcatttcacgccagatcgtgtgttccaaggaaggcttccgtgaggttcgagccagaaaagatattacagatggaggcaaaacaacgaagcgccctagaatgataacaagagttggatgcaaagctatgattgtagtgaaaaggatgaactctggaaaatggatggtttctaaatttgagaaggagcataaccattctttgttatcttctagagcagtccctattacatcaaatgattcttctagagaagttattgattttgctgcaacgagtaatgatcctaatgaagtaaaggctgaaggatgtagcacaggaattcaatgtaattctacagattcactaactgtcctttacaaccatctatgtcaggaagccataaaatttgcaaaagaagggtcagttacagaagaaatttaccatgtggcaatgaatgccttgaaagaggctgcagagaaggtttctgaagtcaaaaggagtcacccgacaatgtcacagagtaaacatgaagttatgcaaatggaaactatgagtgcttcgcaatgttcaaatgatgacaaacagaaaacaatgacaccacagctcaagtttttgcaagagcccagtcccagtcttgtgctaataccaaccaaccttttgactcattcaagctcgaattgtgctgacaatattccactctcatgtgatttaactataaatgatggccaatacaggttgttggccgctcctattgaagcagttccaatttcataccgtcctgcagaacccatccaacaaccacacggaagttttcctaattcagggccactacccggttttctacctaaactgtacaaacgaggaaaaggtccaaactcgctggtgcatgctactgctcttgcttgtggtgctcgtgtcgtgcctcctgaggaggctgcctcgctgatcaaggctattgagtccaagatcagatctggaggagccacaatagcaaaattgccttcaagcagcttgacacctctaattcctgaggtcgcctctatgtcatcttctagtgaagatgatgaggaaaatgaccacagtgagccactgatggcgagtgttgaacacaactgccatgatcagagctctgaggaaatgaagttggaggctgatccaccatcagagttggaaactgaagctgagaattgttctgcgcagccagaaaatgaaaacaacggtcctactcattgctga
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| Protein seq | MEGVVTSSVGEPNQDNEPRDSSIELPRVITDMETSAMHDPEAQKLIGHEADTELTPYEGMEFESEDAARDFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCENLHVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHGPVPPRKPHAGEHHDCDLMENPHSIEVDPIDEPVEGMEFESEEAAKLFYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKDITDGGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLLSSRAVPITSNDSSREVIDFAATSNDPNEVKAEGCSTGIQCNSTDSLTVLYNHLCQEAIKFAKEGSVTEEIYHVAMNALKEAAEKVSEVKRSHPTMSQSKHEVMQMETMSASQCSNDDKQKTMTPQLKFLQEPSPSLVLIPTNLLTHSSSNCADNIPLSCDLTINDGQYRLLAAPIEAVPISYRPAEPIQQPHGSFPNSGPLPGFLPKLYKRGKGPNSLVHATALACGARVVPPEEAASLIKAIESKIRSGGATIAKLPSSSLTPLIPEVASMSSSSEDDEENDHSEPLMASVEHNCHDQSSEEMKLEADPPSELETEAENCSAQPENENNGPTHC |
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| Function | Protein FAR1-RELATED SEQUENCE 7 [UniProtKB/Swiss-Prot:Q9M8J3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0011260 | OsCMeo_03g0011260.01 | Chr03 | 8287934 | 8293173 | + | NAM | ||
| CDS seq | atggaaggtgtggtaaccagttcagttggtgaaccaaatcaagacaatgagccaagggattcttcaatagaacttcccagagtcattactgacatggagacttcagccatgcatgatcctgaagctcaaaagctaattggacatgaagctgatactgaattaacgccttatgaaggaatggaatttgagtctgaagatgctgcgagggatttctacagcaaatatgcaagacatgcaggttttagaattcgaatcagcaggtacactcgttctagacgtgataattcaataatttctcgtcgtattgtctgctcaaaagaggggtttcatgaaactcgtgattgtgaaaacctccatgtggaccagaaacagcaagcaagggtaggaactagagttggttgcaaggccatgttaatgattaaaaagtttgggcctgacaaatgggttgttaccaaattcataaaaatccataatcatggaccggttccaccaagaaaacctcatgctggagaacatcatgattgtgatctaatggaaaatccacattctattgaggtggaccctattgatgagccagtcgagggtatggaatttgaatctgaagaagctgctaaattattctatattaactatgcgagggttaatggtttccgtgcacgtattagcaggtactgccgttcaagacgtgataattcaatcatttcacgccagatcgtgtgttccaaggaaggcttccgtgaggttcgagccagaaaagatattacagatggaggcaaaacaacgaagcgccctagaatgataacaagagttggatgcaaagctatgattgtagtgaaaaggatgaactctggaaaatggatggtttctaaatttgagaaggagcataaccattctttgttatcttctagagcagtccctattacatcaaatgattcttctagagaagttattgattttgctgcaacgagtaatgatcctaatgaagtaaaggctgaaggatgtagcacaggaattcaatgtaattctacagattcactaactgtcctttacaaccatctatgtcaggaagccataaaatttgcaaaagaagggtcagttacagaagaaatttaccatgtggcaatgaatgccttgaaagaggctgcagagaaggtttctgaagtcaaaaggagtcacccgacaatgtcacagagtaaacatgaagttatgcaaatggaaactatgagtgcttcgcaatgttcaaatgatgacaaacagaaaacaatgacaccacagctcaagtttttgcaagagcccagtcccagtcttgtgctaataccaaccaaccttttgactcattcaagctcgaattgtgctgacaatattccactctcatgtgatttaactataaatgatggccaatacaggttgttggccgctcctattgaagcagttccaatttcataccgtcctgcagaacccatccaacaaccacacggaagttttcctaattcagggccactacccggttttctacctaaactgtacaaacgaggaaaaggtccaaactcgctggtgcatgctactgctcttgcttgtggtgctcgtgtcgtgcctcctgaggaggctgcctcgctgatcaaggctattgagtccaagatcagatctggaggagccacaatagcaaaattgccttcaagcagcttgacacctctaattcctgaggtcgcctctatgtcatcttctagtgaagatgatgaggaaaatgaccacagtgagccactgatggcgagtgttgaacacaactgccatgatcagagctctgaggaaatgaagttggaggctgatccaccatcagagttggaaactgaagctgagaattgttctgcgcagccagaaaatgaaaacaacggtcctactcattgctga
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| Protein seq | MEGVVTSSVGEPNQDNEPRDSSIELPRVITDMETSAMHDPEAQKLIGHEADTELTPYEGMEFESEDAARDFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCENLHVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHGPVPPRKPHAGEHHDCDLMENPHSIEVDPIDEPVEGMEFESEEAAKLFYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKDITDGGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLLSSRAVPITSNDSSREVIDFAATSNDPNEVKAEGCSTGIQCNSTDSLTVLYNHLCQEAIKFAKEGSVTEEIYHVAMNALKEAAEKVSEVKRSHPTMSQSKHEVMQMETMSASQCSNDDKQKTMTPQLKFLQEPSPSLVLIPTNLLTHSSSNCADNIPLSCDLTINDGQYRLLAAPIEAVPISYRPAEPIQQPHGSFPNSGPLPGFLPKLYKRGKGPNSLVHATALACGARVVPPEEAASLIKAIESKIRSGGATIAKLPSSSLTPLIPEVASMSSSSEDDEENDHSEPLMASVEHNCHDQSSEEMKLEADPPSELETEAENCSAQPENENNGPTHC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0011260 | OsCMeo_03g0011260.02 | Chr03 | 8287956 | 8293175 | + | IsoSeq | ||
| CDS seq | tccgcctcggagatccggcctcatccgcctcgtcgtctcctctcctcctcccccactcgcgtcgcgtctcctttctttaattgcttctctctcttctcccaattgcagtcctctCcccccccactaatcccacccggtaatccctctcacgatgaacggccgcggcggcgattctccggcgacgaattgctgcaggggcggttcttcttcttcgtcttcgtcttggcgccggtcgatgtgggtctggtcgttgagtttgtatgcgatttgaccgctcccacgcacctgtggcgtagttggttgcggtgcaactgttcgagc
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| Protein seq | SASEIRPHPPRRLLSSSPTRVASPFFNCFSLFSQLQSSPPPLIPPGNPSHDERPRRRFSGDELLQGRFFFFVFVLAPVDVGLVVEFVCDLTAPTHLWRSWLRCNCSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 8289476 | 8291007 | + | OsCMeo_03g0011260.01 | OsCMeo_03g0011260.02,OsCMeo_03g0011260.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.373730 | 6.217415 | 4.193626 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0255400 | RBH | 3.577929 | 2.979511 | 0.661255 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15040 | RBH | 2.077121 | 1.628173 | 0.139532 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0255400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011400 | RBH | 1.868631 | 21.193407 | 3.172354 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011240 | RBH | 0.643070 | 3.513811 | 1.855230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011220 | RBH | 0.795520 | 0.389736 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0011090 | RBH | 11.623124 | 8.892706 | 10.267609 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0139200 | RBH | 15.301639 | 48.755312 | 18.692337 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010980 | RBH | 1.234758 | 1.046027 | 0.930221 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0139700 | RBH | 9.42459 | 24.599949 | 1.4656195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0011130 | RBH | 0.540030 | 0.241013 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011210 | RBH | 1.194686 | 12.219278 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0011180 | RBH | 17.884367 | 15.237847 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011160 | RBH | 3.136905 | 2.345608 | 0.964813 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0011090 | RBH | 2.855252 | 13.420892 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011080 | RBH | 2.295468 | 5.347793 | 0.788287 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010950 | RBH | 4.818470 | 34.130394 | 4.036411 |
