Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0164400 | OGI:03009190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:3471177-3473588 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACTCAATTGCAAAACATATTAAGATGCTAATCATCCAACCCAAATATAAAAAAGTACTTCAGGTCCATTACAATTTTGGAACATGTTCAAACAATATAAACTGTACGCACACAACATCAATATACTTCATGTTGGACCATACAAACATCCATGTTCACCACAGCCATCCTGTACTCCACCCTCTGGGACAGCAAAATCACACATCTTCGTTCACTTTCCTGTAAAAAAAATAAAAAAAACCTCATATATATTTGTAAAGTACACCACAGAACAAAAAAAAAAAGATTACTTGGTAAAACTTGCCTTAGGTATATAGGGCACGATCGAATACTGTGCCCTGGGATGCGGCAAAAACCACATCTTCTCTTACGTTTCTCCAAGAAACCCCTCATTCTCTTTGTCGGAGCTCCTTTAGGGACAATTTGTGTCGGATCAAGCACCATGTCACCACTTTCAATATCATTCCGGCTACTTTGCCCAACCACATAACCAAACTCAATGTCAAAATTTTCATAATTTTCACTACTATCCTCTTCAAGCATTAGATTCTCTAACATCTTCATTACTTTCACCGTGCTCTCTTCTGTCATGGATGATTTGAAAAAAGCTTCACTACCCAAACAACGCAACAGCCGATAGCGTTCCATTTGGTCTGACCAAGTGTAAATTGAACCATACCTATCAGAAGGAAATGCATTCTTTGCTTTCATAGTCCATCTACGTGCTATGCAGAAGGTCGGAATGGTGTCTAACTTTAAATAATTTCAGAACTGCAAATAAATGATTGCATGGAATGTATTCGCACTCCATTTTTCTACAAGGGCAGCAGATGCTAACCAACAATGCTTCCTCAAACATGCCGGTCAAAATGACAACACCATCCTTGCCAATCATTTGCAATACATACCTGACACAATTGTCCTCCTCTATAGTATCTATTACCTCCCAATTCATGCCCATGTATAACTCCACCTTAACCTTCTTGAAAATTTTAGGTGTAAAAACACGAGCTGCATCCTTCTCTATTAGAGTAGAGTCATTGCTTGTAAATGGTACTGACTGAGATGCTTTTGCATCCAACTCTGCCTCTTGATGACGCATACGTGACAAGCAATGTTCATAGTGCTCAATCAAAATGACAAGGCTCATTTTTCTGTCCAACAACCTATGCAGTTTTGAGTTAAGACTTTCACTTCTTTGATTGCTCTTCATGCCAAGAAAAACCCTCCCTTTAGTGTATGCTGCTGCCCACTTTTTCCTTAGATTATACATCCTATTCAACCACCTGTTCTCATCTGATACTTTATGCTTAACCTTGAACTCAACCCATTTTCTCTCAAACTCATCTTCTTCAAGTGGAGCATGCACAAGGACCCTAAAATCTGAAAGCATAGTTGGACTAAGGTTACGTGCCATATTCTGCTCAATATGCCATGTGCACAACCGATGGTCAGAATTTGGAAACACAAGTAAGATAGCTCTACGCATTGCATTGTCTCCATCTGTGATAACAGACTTGGGATGTTTCTGACACATGCAACTTAAAAACTGCTTAAGTACCCATTCATAAGTACCAACCCTCTCATCGGAAACTACAGCACAACCAAAAATCACAGTCGACCCATGGTGGTTCACCCCAACAAAAGGAATGAAAGGGAGATTGTATTTGTTCACTCGATAGGTGCTGTCAAACACGACAACATCACCAAATGCATCATAATCTATTCTTGATTGTGGATCTGCCCAAAATAACCTCTTCAAGCATCCTGCTTCGTCGGTCTCATACTCATAATAGAAATCCATATCATCTTTCTGACGAGCTTGCATGTACTTAATAACACGGTCAGCATCTCCACCATCAATCCGTTTCTTCTTCATTTTCACAAAAAAATTGTACAAATCCCTTGTAACAAATCCTGCACCTTCAAAACCACCATGGTCTCTCTCTATTACATCCATCACTTGGTGCTGATGTAAACCTAAATCTCTCAATTCCACCAATTTTGCCTGTTGTGCTGGAGTAATTCTACGATGTGAACGGAGAAATGCCACTTCATCAGCTTTACACAAAGGATGATTATGATCTGCCACAAACCTTGTTACATACCAATGGCCTTTTATCTCATCGAGTTTAATCTCAAAATGAGCATTGCATCCACAATGAGTTAGTGCTCTGGGTTCCCTAGTTCTGCCAGAATAATCCATATACACCTCCTTCCTAAATCCTTCCCTTGAGCATGTGAAGCGCTTATGAAATATCAATCCACTAAAACGATCACGCCTACTATAATCCTTCCTTACACTAAAACCTTTCTCTTTCGCATACTGGTTATAGAAAGCAAAACCTTCATCCTCACTACTGAATTTCATAGCCATAAACTTACAATACTCATCCTGATCCTCAAATCTTG
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| CDS seq | AGATTTGAGGATCAGGATGAGTATTGTAAGTTTATGGCTATGAAATTCAGTAGTGAGGATGAAGGTTTTGCTTTCTATAACCAGTATGCGAAAGAGAAAGGTTTTAGTGTAAGGAAGGATTATAGTAGGCGTGATCGTTTTAGTGGATTGATATTTCATAAGCGCTTCACATGCTCAAGGGAAGGATTTAGGAAGGAGGTGTATATGGATTATTCTGGCAGAACTAGGGAACCCAGAGCACTAACTCATTGTGGATGCAATGCTCATTTTGAGATTAAACTCGATGAGATAAAAGGCCATTGGTATGTAACAAGGTTTGTGGCAGATCATAATCATCCTTTGTGTAAAGCTGATGAAGTGGCATTTCTCCGTTCACATCGTAGAATTACTCCAGCACAACAGGCAAAATTGGTGGAATTGAGAGATTTAGGTTTACATCAGCACCAAGTGATGGATGTAATAGAGAGAGACCATGGTGGTTTTGAAGGTGCAGGATTTGTTACAAGGGATTTGTACAATTTTTTTGTGAAAATGAAGAAGAAACGGATTGATGGTGGAGATGCTGACCGTGTTATTAAGTACATGCAAGCTCGTCAGAAAGATGATATGGATTTCTATTATGAGTATGAGACCGACGAAGCAGGATGCTTGAAGAGGTTATTTTGGGCAGATCCACAATCAAGAATAGATTATGATGCATTTGGTGATGTTGTCGTGTTTGACAGCACCTATCGAGTGAACAAATACAATCTCCCTTTCATTCCTTTTGTTGGGGTGAACCACCATGGGTCGACTGTGATTTTTGGTTGTGCTGTAGTTTCCGATGAGAGGGTTGGTACTTATGAATGGGTACTTAAGCAGTTTTTAAGTTGCATGTGTCAGAAACATCCCAAGTCTGTTATCACAGATGGAGACAATGCAATGCGTAGAGCTATCTTACTTGTGTTTCCAAATTCTGACCATCGGTTGTGCACATGGCATATTGAGCAGAATATGGCACGTAACCTTAGTCCAACTATGCTTTCAGATTTTAGGGTCCTTGTGCATGCTCCACTTGAAGAAGATGAGTTTGAGAGAAAATGGGTTGAGTTCAAGGTTAAGCATAAAGTATCAGATGAGAACAGGTGGTTGAATAGGATGTATAATCTAAGGAAAAAGTGGGCAGCAGCATACACTAAAGGGAGGGTTTTTCTTGGCATGAAGAGCAATCAAAGAAGTGAAAGTCTTAACTCAAAACTGCATAGGTTGTTGGACAGAAAAATGAGCCTTGTCATTTTGATTGAGCACTATGAACATTGCTTGTCACGTATGCGTCATCAAGAGGCAGAGTTGGATGCAAAAGCATCTCAGTCAGTACCATTTACAAGCAATGACTCTACTCTAATAGAGAAGGATGCAGCTCGTGTTTTTACACCTAAAATTTTCAAGAAGGTTAAGGTGGAGTTATACATGGGCATGAATTGGGAGGTAATAGATACTATAGAGGAGGACAATTGTGTCAGGTATGTATTGCAAATGATTGGCAAGGATGGTGTTGTCATTTTGACCGGCATGTTTGAGGAAGCATTGTTGGTTAGCATCTGCTGCCCTTGTAGAAAAATGGAGTGCGAATACATTCCATGCAATCATTTATTTGCAGTTCTGAAATTATTTAAAGTTAGACACCATTCCGACCTTCTGCATAGCACGTAG
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| Protein seq | RFEDQDEYCKFMAMKFSSEDEGFAFYNQYAKEKGFSVRKDYSRRDRFSGLIFHKRFTCSREGFRKEVYMDYSGRTREPRALTHCGCNAHFEIKLDEIKGHWYVTRFVADHNHPLCKADEVAFLRSHRRITPAQQAKLVELRDLGLHQHQVMDVIERDHGGFEGAGFVTRDLYNFFVKMKKKRIDGGDADRVIKYMQARQKDDMDFYYEYETDEAGCLKRLFWADPQSRIDYDAFGDVVVFDSTYRVNKYNLPFIPFVGVNHHGSTVIFGCAVVSDERVGTYEWVLKQFLSCMCQKHPKSVITDGDNAMRRAILLVFPNSDHRLCTWHIEQNMARNLSPTMLSDFRVLVHAPLEEDEFERKWVEFKVKHKVSDENRWLNRMYNLRKKWAAAYTKGRVFLGMKSNQRSESLNSKLHRLLDRKMSLVILIEHYEHCLSRMRHQEAELDAKASQSVPFTSNDSTLIEKDAARVFTPKIFKKVKVELYMGMNWEVIDTIEEDNCVRYVLQMIGKDGVVILTGMFEEALLVSICCPCRKMECEYIPCNHLFAVLKLFKVRHHSDLLHST |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0164400 | OsNip_03t0164400-01 | Chr03 | 3471177 | 3473588 | - | RAP2018-11-26 | ||
| CDS seq | AGATTTGAGGATCAGGATGAGTATTGTAAGTTTATGGCTATGAAATTCAGTAGTGAGGATGAAGGTTTTGCTTTCTATAACCAGTATGCGAAAGAGAAAGGTTTTAGTGTAAGGAAGGATTATAGTAGGCGTGATCGTTTTAGTGGATTGATATTTCATAAGCGCTTCACATGCTCAAGGGAAGGATTTAGGAAGGAGGTGTATATGGATTATTCTGGCAGAACTAGGGAACCCAGAGCACTAACTCATTGTGGATGCAATGCTCATTTTGAGATTAAACTCGATGAGATAAAAGGCCATTGGTATGTAACAAGGTTTGTGGCAGATCATAATCATCCTTTGTGTAAAGCTGATGAAGTGGCATTTCTCCGTTCACATCGTAGAATTACTCCAGCACAACAGGCAAAATTGGTGGAATTGAGAGATTTAGGTTTACATCAGCACCAAGTGATGGATGTAATAGAGAGAGACCATGGTGGTTTTGAAGGTGCAGGATTTGTTACAAGGGATTTGTACAATTTTTTTGTGAAAATGAAGAAGAAACGGATTGATGGTGGAGATGCTGACCGTGTTATTAAGTACATGCAAGCTCGTCAGAAAGATGATATGGATTTCTATTATGAGTATGAGACCGACGAAGCAGGATGCTTGAAGAGGTTATTTTGGGCAGATCCACAATCAAGAATAGATTATGATGCATTTGGTGATGTTGTCGTGTTTGACAGCACCTATCGAGTGAACAAATACAATCTCCCTTTCATTCCTTTTGTTGGGGTGAACCACCATGGGTCGACTGTGATTTTTGGTTGTGCTGTAGTTTCCGATGAGAGGGTTGGTACTTATGAATGGGTACTTAAGCAGTTTTTAAGTTGCATGTGTCAGAAACATCCCAAGTCTGTTATCACAGATGGAGACAATGCAATGCGTAGAGCTATCTTACTTGTGTTTCCAAATTCTGACCATCGGTTGTGCACATGGCATATTGAGCAGAATATGGCACGTAACCTTAGTCCAACTATGCTTTCAGATTTTAGGGTCCTTGTGCATGCTCCACTTGAAGAAGATGAGTTTGAGAGAAAATGGGTTGAGTTCAAGGTTAAGCATAAAGTATCAGATGAGAACAGGTGGTTGAATAGGATGTATAATCTAAGGAAAAAGTGGGCAGCAGCATACACTAAAGGGAGGGTTTTTCTTGGCATGAAGAGCAATCAAAGAAGTGAAAGTCTTAACTCAAAACTGCATAGGTTGTTGGACAGAAAAATGAGCCTTGTCATTTTGATTGAGCACTATGAACATTGCTTGTCACGTATGCGTCATCAAGAGGCAGAGTTGGATGCAAAAGCATCTCAGTCAGTACCATTTACAAGCAATGACTCTACTCTAATAGAGAAGGATGCAGCTCGTGTTTTTACACCTAAAATTTTCAAGAAGGTTAAGGTGGAGTTATACATGGGCATGAATTGGGAGGTAATAGATACTATAGAGGAGGACAATTGTGTCAGGTATGTATTGCAAATGATTGGCAAGGATGGTGTTGTCATTTTGACCGGCATGTTTGAGGAAGCATTGTTGGTTAGCATCTGCTGCCCTTGTAGAAAAATGGAGTGCGAATACATTCCATGCAATCATTTATTTGCAGTTCTGAAATTATTTAAAGTTAGACACCATTCCGACCTTCTGCATAGCACGTAG
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| Protein seq | RFEDQDEYCKFMAMKFSSEDEGFAFYNQYAKEKGFSVRKDYSRRDRFSGLIFHKRFTCSREGFRKEVYMDYSGRTREPRALTHCGCNAHFEIKLDEIKGHWYVTRFVADHNHPLCKADEVAFLRSHRRITPAQQAKLVELRDLGLHQHQVMDVIERDHGGFEGAGFVTRDLYNFFVKMKKKRIDGGDADRVIKYMQARQKDDMDFYYEYETDEAGCLKRLFWADPQSRIDYDAFGDVVVFDSTYRVNKYNLPFIPFVGVNHHGSTVIFGCAVVSDERVGTYEWVLKQFLSCMCQKHPKSVITDGDNAMRRAILLVFPNSDHRLCTWHIEQNMARNLSPTMLSDFRVLVHAPLEEDEFERKWVEFKVKHKVSDENRWLNRMYNLRKKWAAAYTKGRVFLGMKSNQRSESLNSKLHRLLDRKMSLVILIEHYEHCLSRMRHQEAELDAKASQSVPFTSNDSTLIEKDAARVFTPKIFKKVKVELYMGMNWEVIDTIEEDNCVRYVLQMIGKDGVVILTGMFEEALLVSICCPCRKMECEYIPCNHLFAVLKLFKVRHHSDLLHST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.428469 | 1.610354 | 0.751788 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06860 | RBH | 1.068962 | 1.082632 | 0.193441 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0164400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011370 | SBH | 0.939774 | 9.366602 | 6.925453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011230 | SBH | 2.450686 | 4.062182 | 10.586390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026640 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0055300 | RBH | 1.491429 | 2.8009785 | 10.6622145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0070000 | SBH | 5.266263 | 7.6928585 | 16.883605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026500 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026450 | RBH | 0.0 | 0.0 | 0.0 |
