Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g49600 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:28522160-28523748 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATTCAAACTCCAATTTAATTGGAACTAAAAATTTTAAAAGTACAAAATAAACAGCATGCATGAATGTAGGTCCAAAATGTACATGATCCCGAACAGCAATCAAGTAGGGGGATAGTCCAAGTAAATTTGTGTGGAGCCAAGCGAGCAAGGAAAGAGCCTTGTCTGAGACTCTCTGATTTGTCCCGCCCGCTTGACCAAGACCTCTAGGCTCTAGTGATGTTCCACGCCCTCTGGTCGTTTTCAGCAATTCGTTCACTTGATTCCCGCACAATCTCGGCGAGAAACAGTATTCTACAGTCTGCACTCCGCCTCCACACAAGCCATGCCTCCTCTGCTCCTCCTCCTCCCCGTCGTGCTCGCCCTCTTCGCCGCGGCCGATGCCTCCCCCTCCGCCTGCCGCAACGCCACCTGCGGCGACGTGCCCGTCGCCTACCCGTTCTGGCTGATCGACAACTCATCCGCCTTGGGCTGTGGCTACCCCGGCCTTGGCCTCCGCTGCGTGGACAACACCACTCTGATTCTCCCCTTCCGGACACACCAGTACAGGGTCCTGGACATCGAGTACGGGAAGCACACCATCTCCCTCACCGACGCCGACATGCAACACTCCGACACAAACAACAGCTGCCCGCACCTACACGCCAACCTCACCATCGACGACAACTCCTGGCTGCAGCTCGCGTCCTCTGACTCCAACATCACCTTCCTCTACAACTGCAAGAGCAACTCCTCCTTGCTGTCCTCGACCTCCGTTGTGAAGCTAACTGGATGTGGAGCTGGACCAGAGCACATCGGTAGTTCGTACGTGTTCCTGGATGGCTGGATCACGGGTGAAGCGTACGATTACGAGTGCGAGACGGTGGTGGTGGCGCCGGTGATCGATGCGCACAAGAAGGCCATGGTGGATGCGCACGGGGGTCTTCCTCCCGCGGACGGATCATTTGGCGATGTGCTGAGCGCTGGGTTCGAGCTGACATACAGCGCTCACTCCGACAAGTGCGGCAAATGCGAGCGAACCAAGGGGTGGTGCGGCTACCGGCACAACGAGACGTCCACCACCATGGATTTCACCTGTTTCTGCGACGAAGGCCCGACCAAGAGCCATTGCGGTACGCATGCCTCTTCTCCTCTTACAATGTCATTACTTCTCTTCGGTGTTTTGCTTGCTTCGGATTTCAGAATTGGGGCCGTGGATATCGAATTCGAATTACTAGTAGAAAGACTAAAAATGATCAATAAACCAATACGAATAATCAACTTCTCCAAGCAGTTGATTAGAGTATACTTAGAGGATCAATTGCTATATCCTTTCTTTTTTTTCTTTATTAATAACTCCTACCTGCCGGCGGCGAGAATCCTCTTGACAAACAGAGTAGTTTATCAAAAAAAAAAAAACTGCAGTGGCACTACCTGACCATCCTGAGTAGATGAGCAATCCAATGTGTACCTGTGTTGTCTGTTGATCATGACCGTCCTCGATGGTACCAGTTCGTGTGCCGTTCGACGGTGATATCTAATCCCCAACGGCGAAATGCACTCGTGCTCAGTTCTATATATAAAAAAAAGGATCTTCTGGAGGGCGACATAT
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| CDS seq | ATGCCTCCTCTGCTCCTCCTCCTCCCCGTCGTGCTCGCCCTCTTCGCCGCGGCCGATGCCTCCCCCTCCGCCTGCCGCAACGCCACCTGCGGCGACGTGCCCGTCGCCTACCCGTTCTGGCTGATCGACAACTCATCCGCCTTGGGCTGTGGCTACCCCGGCCTTGGCCTCCGCTGCGTGGACAACACCACTCTGATTCTCCCCTTCCGGACACACCAGTACAGGGTCCTGGACATCGAGTACGGGAAGCACACCATCTCCCTCACCGACGCCGACATGCAACACTCCGACACAAACAACAGCTGCCCGCACCTACACGCCAACCTCACCATCGACGACAACTCCTGGCTGCAGCTCGCGTCCTCTGACTCCAACATCACCTTCCTCTACAACTGCAAGAGCAACTCCTCCTTGCTGTCCTCGACCTCCGTTGTGAAGCTAACTGGATGTGGAGCTGGACCAGAGCACATCGGTAGTTCGTACGTGTTCCTGGATGGCTGGATCACGGGTGAAGCGTACGATTACGAGTGCGAGACGGTGGTGGTGGCGCCGGTGATCGATGCGCACAAGAAGGCCATGGTGGATGCGCACGGGGGTCTTCCTCCCGCGGACGGATCATTTGGCGATGTGCTGAGCGCTGGGTTCGAGCTGACATACAGCGCTCACTCCGACAAGTGCGGCAAATGCGAGCGAACCAAGGGGTGGTGCGGCTACCGGCACAACGAGACGTCCACCACCATGGATTTCACCTGTTTCTGCGACGAAGGCCCGACCAAGAGCCATTGCGAATTGGGGCCGTGGATATCGAATTCGAATTACTAG
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| Protein seq | MPPLLLLLPVVLALFAAADASPSACRNATCGDVPVAYPFWLIDNSSALGCGYPGLGLRCVDNTTLILPFRTHQYRVLDIEYGKHTISLTDADMQHSDTNNSCPHLHANLTIDDNSWLQLASSDSNITFLYNCKSNSSLLSSTSVVKLTGCGAGPEHIGSSYVFLDGWITGEAYDYECETVVVAPVIDAHKKAMVDAHGGLPPADGSFGDVLSAGFELTYSAHSDKCGKCERTKGWCGYRHNETSTTMDFTCFCDEGPTKSHCELGPWISNSNY |
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| Function | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [UniProtKB/Swiss-Prot:P0C5E2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g49600 | LOC_Os01g49600.1 | Chr01 | 28522160 | 28523748 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCTCCTCTGCTCCTCCTCCTCCCCGTCGTGCTCGCCCTCTTCGCCGCGGCCGATGCCTCCCCCTCCGCCTGCCGCAACGCCACCTGCGGCGACGTGCCCGTCGCCTACCCGTTCTGGCTGATCGACAACTCATCCGCCTTGGGCTGTGGCTACCCCGGCCTTGGCCTCCGCTGCGTGGACAACACCACTCTGATTCTCCCCTTCCGGACACACCAGTACAGGGTCCTGGACATCGAGTACGGGAAGCACACCATCTCCCTCACCGACGCCGACATGCAACACTCCGACACAAACAACAGCTGCCCGCACCTACACGCCAACCTCACCATCGACGACAACTCCTGGCTGCAGCTCGCGTCCTCTGACTCCAACATCACCTTCCTCTACAACTGCAAGAGCAACTCCTCCTTGCTGTCCTCGACCTCCGTTGTGAAGCTAACTGGATGTGGAGCTGGACCAGAGCACATCGGTAGTTCGTACGTGTTCCTGGATGGCTGGATCACGGGTGAAGCGTACGATTACGAGTGCGAGACGGTGGTGGTGGCGCCGGTGATCGATGCGCACAAGAAGGCCATGGTGGATGCGCACGGGGGTCTTCCTCCCGCGGACGGATCATTTGGCGATGTGCTGAGCGCTGGGTTCGAGCTGACATACAGCGCTCACTCCGACAAGTGCGGCAAATGCGAGCGAACCAAGGGGTGGTGCGGCTACCGGCACAACGAGACGTCCACCACCATGGATTTCACCTGTTTCTGCGACGAAGGCCCGACCAAGAGCCATTGCGAATTGGGGCCGTGGATATCGAATTCGAATTACTAG
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| Protein seq | MPPLLLLLPVVLALFAAADASPSACRNATCGDVPVAYPFWLIDNSSALGCGYPGLGLRCVDNTTLILPFRTHQYRVLDIEYGKHTISLTDADMQHSDTNNSCPHLHANLTIDDNSWLQLASSDSNITFLYNCKSNSSLLSSTSVVKLTGCGAGPEHIGSSYVFLDGWITGEAYDYECETVVVAPVIDAHKKAMVDAHGGLPPADGSFGDVLSAGFELTYSAHSDKCGKCERTKGWCGYRHNETSTTMDFTCFCDEGPTKSHCELGPWISNSNY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.108692 | 0.184753 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0690200 | SBH | 0.269421 | 0.347245 | 0.880302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49560 | RBH | 0.000000 | 0.216516 | 0.025338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0690200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029770 | SBH | 0.298769 | 4.239184 | 5.291976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029360 | SBH | 0.307023 | 0.0 | 2.280102 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029760 | SBH | 0.065632 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029000 | SBH | 0.070262 | 0.030125 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028650 | SBH | 15.915562 | 4.923475 | 21.428934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0473300 | SBH | 0 | 0 | 0.004784 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028390 | RBH | 0.000000 | 0.0 | 1.241875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0462700 | SBH | 3.374823 | 2.8470465 | 0.072646 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028680 | SBH | 0.064538 | 0.374204 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028550 | SBH | 0.736243 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028850 | RBH | 4.082591 | 2.877311 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028990 | SBH | 3.220644 | 1.130993 | 5.344409 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028820 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029280 | SBH | 0.032010 | 0.338633 | 0.148234 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028920 | SBH | 2.098474 | 5.345009 | 11.444468 |
