Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0029360 | OGI:01002250 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:28643191-28645356 | ||||||||
| Gene Symbol | NBIP1, OsNBIP1 | ||||||||||
| DNA seq | ctagtaattcgaattcgatatccccggccccaattctgaaatccgaagcaagcaaaacaccgaagagaagtaatgacattgcaagaggagaagaggcatgcgtaccgcaatggctcttggtcgggccttcgtcgcagaaacaggtgaaatccatgctggtggacgtctcgttgtgccggtagccgcaccaccccttggttcgctcgcatttgccgcacttgtcggagtgagcgctgtatgtcagctcgaacccagcgctcagcacctcgccaaatgatccgtccgcgggaggaagacccccgtgcgcgtccaccatggccttcttgtgcgcatcgatcaccggcgccaccaccaccgtctcgcactcgtaatcgtacgcttcacccgtgatccagccatccaggaacacgtacgaactaccgatgtgctccggtccagctccacatccagttagcttcacggcggaggtcgaggacagcaaggaggagttgctcttgcagttgtagaggaaggtgatgttggagtcggaggacgcgagctgcagccaggagttgtcgtcgatggtgaggttggcgtgtaggtgcgggcagctgctgtttgtgtcggggtgtgccatgtcggcgtcggtgagggagatggtgtgcttcccgtactcgatgtccaggaccctgtactggtgtgtccggaaggggagaatcagagtggtgttgtccacgcagcggaggccgaggccggggtagccacagcccaaggcggatgagttgtcgatcagccagaacgggtaggcgacgggaacgtcgccgcaggtggcgttgcggcaggcggagggggaggcatcggcgtcggcgaagaggacgagcacgacggggaggaggaggaggaggagcggaggaggcatggttgtgtgcaggggtgtcgtgtgcgtgtgtggaggaagggagaggcagaagatcgagctcccgattttcccggtgaaactgtgtgcgtgagagtcaagtgatcggtggagttgggttgagttttgctgaaagcctgagactgacgcgggtgcattcggccggacgtggaaagtatgcgcggcagctagcggttgcgttggcgctacctcccgtcgtcccgtcgtccttgcatgccccgcgtattaatcgcggacggcgacggagtgggcctcgccggtgggtggtcgggtcgggtcgggtggtcactgttctgattgcgttctacaggtagttcgaggacgtgttgattgtcgataccaggttcatgattttgaatttttcatgtatttgggtttgggctcgaaaagcctaacgcgatcggggttccaatttttctcttttggttcggtttagtgcatcggtcctttttctctttttttttctttttttttttgctaaaacttggtgggctcacaattgccattccccatatgcacgaggaataagttcacccgaggtctctcaacttaacatcgagattttttgaagtcccttaaccacaaaagtagaaatttatacccctaaactcacacaaaccgtgcataagagatcccaaggcagtatatatgagtggtttcgctgacgtggcatcctagtcagcaaaaaaattaaaaaagtacatgagggccacatgtcagctccacatatttttttcttctcttttctctcttctctcttctcatcttcaggccagcggctggaggagagatgatgggcacgcgcagatgcgggcgacgggtggagcatggcggcagagcagcggtgggcgagcatgacagcgaagcggcgacgggcggcgggcggagcggacggcgagcgaggaggctggcacgacgacgtcgggcgtcaccgaaatgcgcgcggctatggcgtcagcaagctcgtcggctggtgcggccttcccgcggcagaccgggcacgaggcatgggacgagagccacatgtcgatgcactcctgttggaacacgtgcccgcaagccgggagctgcctcaccttctccctctcgtcgacgacgttgaggcagaccacgcactcgaacgacgtcgccgtgtctgagatctcgccgttgtcatgggctcgcacgtataggaacgacgggaggtgcgcgatggtggcggcgtctaggccgaacctgggcagtgtcggccgctgctgctcctgctccat
More
|
||||||||||
| CDS seq | atggagcaggagcagcagcggccgacactgcccaggttcggcctagacgccgccaccatcgcgcacctcccgtcgttcctatacgtgcgagcccatgacaacggcgagatctcagacacggcgacgtcgttcgagtgcgtggtctgcctcaacgtcgtcgacgagagggagaaggtgaggcagctcccggcttgcgggcacgtgttccaacaggagtgcatcgacatgtggctctcgtcccatgcctcgtgcccggtctgccgcgggaaggccgcaccagccgacgagcttgctgacgccatagccgcgcgcatttcggtgacgcccgacgtcgtcgtgccagcctcctcgctcgccgtccgctccgcccgccgcccgtcgccgcttcgctgtcatgctcgcccaccgctgctctgccgccatgctccacccgtcgcccgcatctgcgctttcaccgggaaaatcgggagctcgatcttctgcctctcccttcctccacacacgcacacgacacccctgcacacaaccatgcctcctccgctcctcctcctcctcctccccgtcgtgctcgtcctcttcgccgacgccgatgcctccccctccgcctgccgcaacgccacctgcggcgacgttcccgtcgcctacccgttctggctgatcgacaactcatccgccttgggctgtggctaccccggcctcggcctccgctgcgtggacaacaccactctgattctccccttccggacacaccagtacagggtcctggacatcgagtacgggaagcacaccatctccctcaccgacgccgacatggcacaccccgacacaaacagcagctgcccgcacctacacgccaacctcaccatcgacgacaactcctggctgcagctcgcgtcctccgactccaacatcaccttcctctacaactgcaagagcaactcctccttgctgtcctcgacctccgccgtgaagctaactggatgtggagctggaccggagcacatcggtagttcgtacgtgttcctggatggctggatcacgggtgaagcgtacgattacgagtgcgagacggtggtggtggcgccggtgatcgatgcgcacaagaaggccatggtggacgcgcacgggggtcttcctcccgcggacggatcatttggcgaggtgctgagcgctgggttcgagctgacatacagcgctcactccgacaagtgcggcaaatgcgagcgaaccaaggggtggtgcggctaccggcacaacgagacgtccaccagcatggatttcacctgtttctgcgacgaaggcccgaccaagagccattgcgaattggggccggggatatcgaattcgaattactag
More
|
||||||||||
| Protein seq | MEQEQQRPTLPRFGLDAATIAHLPSFLYVRAHDNGEISDTATSFECVVCLNVVDEREKVRQLPACGHVFQQECIDMWLSSHASCPVCRGKAAPADELADAIAARISVTPDVVVPASSLAVRSARRPSPLRCHARPPLLCRHAPPVARICAFTGKIGSSIFCLSLPPHTHTTPLHTTMPPPLLLLLLPVVLVLFADADASPSACRNATCGDVPVAYPFWLIDNSSALGCGYPGLGLRCVDNTTLILPFRTHQYRVLDIEYGKHTISLTDADMAHPDTNSSCPHLHANLTIDDNSWLQLASSDSNITFLYNCKSNSSLLSSTSAVKLTGCGAGPEHIGSSYVFLDGWITGEAYDYECETVVVAPVIDAHKKAMVDAHGGLPPADGSFGEVLSAGFELTYSAHSDKCGKCERTKGWCGYRHNETSTSMDFTCFCDEGPTKSHCELGPGISNSNY |
||||||||||
| Function | RING-H2 finger protein ATL39 [UniProtKB/Swiss-Prot:Q9M0R7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0029360 | OsKeNa_01g0029360.01 | Chr01 | 28643191 | 28645356 | - | NAM | ||
| CDS seq | atggagcaggagcagcagcggccgacactgcccaggttcggcctagacgccgccaccatcgcgcacctcccgtcgttcctatacgtgcgagcccatgacaacggcgagatctcagacacggcgacgtcgttcgagtgcgtggtctgcctcaacgtcgtcgacgagagggagaaggtgaggcagctcccggcttgcgggcacgtgttccaacaggagtgcatcgacatgtggctctcgtcccatgcctcgtgcccggtctgccgcgggaaggccgcaccagccgacgagcttgctgacgccatagccgcgcgcatttcggtgacgcccgacgtcgtcgtgccagcctcctcgctcgccgtccgctccgcccgccgcccgtcgccgcttcgctgtcatgctcgcccaccgctgctctgccgccatgctccacccgtcgcccgcatctgcgctttcaccgggaaaatcgggagctcgatcttctgcctctcccttcctccacacacgcacacgacacccctgcacacaaccatgcctcctccgctcctcctcctcctcctccccgtcgtgctcgtcctcttcgccgacgccgatgcctccccctccgcctgccgcaacgccacctgcggcgacgttcccgtcgcctacccgttctggctgatcgacaactcatccgccttgggctgtggctaccccggcctcggcctccgctgcgtggacaacaccactctgattctccccttccggacacaccagtacagggtcctggacatcgagtacgggaagcacaccatctccctcaccgacgccgacatggcacaccccgacacaaacagcagctgcccgcacctacacgccaacctcaccatcgacgacaactcctggctgcagctcgcgtcctccgactccaacatcaccttcctctacaactgcaagagcaactcctccttgctgtcctcgacctccgccgtgaagctaactggatgtggagctggaccggagcacatcggtagttcgtacgtgttcctggatggctggatcacgggtgaagcgtacgattacgagtgcgagacggtggtggtggcgccggtgatcgatgcgcacaagaaggccatggtggacgcgcacgggggtcttcctcccgcggacggatcatttggcgaggtgctgagcgctgggttcgagctgacatacagcgctcactccgacaagtgcggcaaatgcgagcgaaccaaggggtggtgcggctaccggcacaacgagacgtccaccagcatggatttcacctgtttctgcgacgaaggcccgaccaagagccattgcgaattggggccggggatatcgaattcgaattactag
More
|
|||||||
| Protein seq | MEQEQQRPTLPRFGLDAATIAHLPSFLYVRAHDNGEISDTATSFECVVCLNVVDEREKVRQLPACGHVFQQECIDMWLSSHASCPVCRGKAAPADELADAIAARISVTPDVVVPASSLAVRSARRPSPLRCHARPPLLCRHAPPVARICAFTGKIGSSIFCLSLPPHTHTTPLHTTMPPPLLLLLLPVVLVLFADADASPSACRNATCGDVPVAYPFWLIDNSSALGCGYPGLGLRCVDNTTLILPFRTHQYRVLDIEYGKHTISLTDADMAHPDTNSSCPHLHANLTIDDNSWLQLASSDSNITFLYNCKSNSSLLSSTSAVKLTGCGAGPEHIGSSYVFLDGWITGEAYDYECETVVVAPVIDAHKKAMVDAHGGLPPADGSFGEVLSAGFELTYSAHSDKCGKCERTKGWCGYRHNETSTSMDFTCFCDEGPTKSHCELGPGISNSNY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.307023 | 0.0 | 2.280102 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0690333 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49560 | RBH | 0.000000 | 0.216516 | 0.025338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0690333 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029770 | RBH | 0.298769 | 4.239184 | 5.291976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025810 | SBH | 0.0 | 0.0 | 0.114025 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029000 | SBH | 0.070262 | 0.030125 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028650 | RBH | 15.915562 | 4.923475 | 21.428934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0526400 | SBH | 3.8766685 | 44.186781 | 11.0153685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028390 | RBH | 0.000000 | 0.0 | 1.241875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0462300 | RBH | 0 | 0.468904 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028680 | SBH | 0.064538 | 0.374204 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028550 | RBH | 0.736243 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028830 | RBH | 4.765199 | 4.223144 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029030 | SBH | 0.0 | 0.0 | 0.106944 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028800 | RBH | 0.838764 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029260 | RBH | 0.407451 | 0.0 | 1.253664 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028960 | SBH | 0.0 | 0.0 | 0.0 |
