Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0462300 | OGI:01002250 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:30011415-30012014 | ||||||||
| Gene Symbol | NBIP1, OsNBIP1 | ||||||||||
| DNA seq | TCAGGCCAGCGGCTGGAGGAGAGATGATGGGCACGCGCAGATGCGGGCGACGGGTGGAGCATGGCGGCAGAGCAGCGGTGGGCGAGCATGACAGCGAAGCGGCGACGGGCGGTGGGCGGAGCGGACGGCGAGCGAGGAGGCTGGCACGACGACGTCGGGCGTCACCGAAATGCGCGCGGCTATGGCGTCAGCAAGCTCGTCGGCTGGTGCGGCCTTCCCGCGGCAGACCGGGCACGAGGCATGGGACGAGAGCCACATGTCGATGCACTCCTGTTGGAACACGTGCCCGCAAGCCGGGAGCTGCCTCACCTTCTCCCTCTCGTCGACGACGTTGAGGCAGACCACGCACTCGAACGACGTCGCCGTGTCTGAGATCTCGCCGTTGTCATGGGCTCGCACGTATAGGAACGACGGGAGGTGCGCGATGGTGGCGGCGTCTAGGCCGAACCTGGGTAGTGTCGGCCGCTGCTGCTCCTGCTCCATGACCAGTGGATGATCACGCCGGCGACGGGCAATGCAGAGGGCTCGAGGGCAGATGAAGATGGTGATGAGGAAGAAGCTCAGGGCGAACGACGCGGCCAAGGCGTCGAACAACGTCAT
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| CDS seq | ATGACGTTGTTCGACGCCTTGGCCGCGTCGTTCGCCCTGAGCTTCTTCCTCATCACCATCTTCATCTGCCCTCGAGCCCTCTGCATTGCCCGTCGCCGGCGTGATCATCCACTGGTCATGGAGCAGGAGCAGCAGCGGCCGACACTACCCAGGTTCGGCCTAGACGCCGCCACCATCGCGCACCTCCCGTCGTTCCTATACGTGCGAGCCCATGACAACGGCGAGATCTCAGACACGGCGACGTCGTTCGAGTGCGTGGTCTGCCTCAACGTCGTCGACGAGAGGGAGAAGGTGAGGCAGCTCCCGGCTTGCGGGCACGTGTTCCAACAGGAGTGCATCGACATGTGGCTCTCGTCCCATGCCTCGTGCCCGGTCTGCCGCGGGAAGGCCGCACCAGCCGACGAGCTTGCTGACGCCATAGCCGCGCGCATTTCGGTGACGCCCGACGTCGTCGTGCCAGCCTCCTCGCTCGCCGTCCGCTCCGCCCACCGCCCGTCGCCGCTTCGCTGTCATGCTCGCCCACCGCTGCTCTGCCGCCATGCTCCACCCGTCGCCCGCATCTGCGCGTGCCCATCATCTCTCCTCCAGCCGCTGGCCTGA
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| Protein seq | MTLFDALAASFALSFFLITIFICPRALCIARRRRDHPLVMEQEQQRPTLPRFGLDAATIAHLPSFLYVRAHDNGEISDTATSFECVVCLNVVDEREKVRQLPACGHVFQQECIDMWLSSHASCPVCRGKAAPADELADAIAARISVTPDVVVPASSLAVRSAHRPSPLRCHARPPLLCRHAPPVARICACPSSLLQPLA |
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| Function | RING-H2 finger protein ATL39 [UniProtKB/Swiss-Prot:Q9M0R7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0462300 | OsZS97_01T0462300.1 | Chr01 | 30011415 | 30012014 | - | makerRMon | ||
| CDS seq | ATGACGTTGTTCGACGCCTTGGCCGCGTCGTTCGCCCTGAGCTTCTTCCTCATCACCATCTTCATCTGCCCTCGAGCCCTCTGCATTGCCCGTCGCCGGCGTGATCATCCACTGGTCATGGAGCAGGAGCAGCAGCGGCCGACACTACCCAGGTTCGGCCTAGACGCCGCCACCATCGCGCACCTCCCGTCGTTCCTATACGTGCGAGCCCATGACAACGGCGAGATCTCAGACACGGCGACGTCGTTCGAGTGCGTGGTCTGCCTCAACGTCGTCGACGAGAGGGAGAAGGTGAGGCAGCTCCCGGCTTGCGGGCACGTGTTCCAACAGGAGTGCATCGACATGTGGCTCTCGTCCCATGCCTCGTGCCCGGTCTGCCGCGGGAAGGCCGCACCAGCCGACGAGCTTGCTGACGCCATAGCCGCGCGCATTTCGGTGACGCCCGACGTCGTCGTGCCAGCCTCCTCGCTCGCCGTCCGCTCCGCCCACCGCCCGTCGCCGCTTCGCTGTCATGCTCGCCCACCGCTGCTCTGCCGCCATGCTCCACCCGTCGCCCGCATCTGCGCGTGCCCATCATCTCTCCTCCAGCCGCTGGCCTGA
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| Protein seq | MTLFDALAASFALSFFLITIFICPRALCIARRRRDHPLVMEQEQQRPTLPRFGLDAATIAHLPSFLYVRAHDNGEISDTATSFECVVCLNVVDEREKVRQLPACGHVFQQECIDMWLSSHASCPVCRGKAAPADELADAIAARISVTPDVVVPASSLAVRSAHRPSPLRCHARPPLLCRHAPPVARICACPSSLLQPLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.468904 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0690333 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0690333 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029770 | SBH | 0.298769 | 4.239184 | 5.291976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029360 | RBH | 0.307023 | 0.0 | 2.280102 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029820 | SBH | 0.0 | 0.040402 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028650 | RBH | 15.915562 | 4.923475 | 21.428934 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0588100 | SBH | 0.0239315 | 0.1185045 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028390 | RBH | 0.000000 | 0.0 | 1.241875 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029460 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028550 | RBH | 0.736243 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028830 | RBH | 4.765199 | 4.223144 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029820 | SBH | 0.126771 | 0.283793 | 1.104105 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029630 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030070 | SBH | 0.0 | 0.0 | 2.802054 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029770 | SBH | 0.291648 | 2.711282 | 3.511615 |
