Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0029770 | OGI:01087870 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:29617188-29619312 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatgcccctcccccttgaccggccaccacaatgcggccgccctcgtcgtcggcgacgcccgggacgggccgggtgtcggcgttcacgatgcgcgcggtggcgcgcatgtcgagggcgcggtggttcatcttcctgaggcgggtgtaccagtaccagaacggcccgaggtccgacctgggctccaaccccttcaactcgcccggctggctcgccctcgagctcggcgtgatcatggcgcagatggtcgtcaccaccgccgtcgtcgccacctcccccaaggagcgccccgcgtggccgctccgggtttgggtcgccgcctacaacgtgggcaacgtgctcagcctccccctcctctactggcgccaccggcattcctcctccggcgcccgcggcggcacgctctccgacgatcccgagatgcacggcgccaacgaccctctaaggttcataaaacggcattagctgattagctttcttaatttcttgatgaaaattgaaattgtgtgtgtgggatgcaggaacaggtcgtatctgatgaacaaggcacgggcgttcctggagctgttcttcgcgatgtggttcgtgatgggcaacgtgtgggtgttcgacgcgcggctcgggtcgttccaccgcgcgccgaggctgtacgcgctctgcatcggcctcctcgcatggaacgccgtcgtctactcgctcccattcctcctcttcctcctgctctgctgcttcgtcccggccgtcggctacgcgctcgggtacaacatgaactccgcgtccgtcggccggggcgcctccgacgagcagctcgccgcgctgccgcagtggcggttcaaggagccggccgacgcgccgagagaccgcgaccacgacgatcaggtgagcgcacgttccgttgccgcgtacgttaatatcgtgggatatgttagttttgcatgcacagagatgattaggcagtagcaaagcagcgtgcatgtctctgccgggaggtaggaaagtttagcgatgcagagaggggaattaaggagaaactcgccaaacaaatgattggtgaactcggctattggccagaataggatatccaaaaagtgatgaaacgtgcgcaccaaactagaacaatcttcctttttgggcggatatactaagataagaactgctaaaaccttacttttccccatggttcggtgcttaggaacaactcagccaacatgagctagtgctaactagctaacataagaactgctaaaacctttacctttcccattggttcggtgcttgcttaggaacaacttaggcacttagccaacataaactagtgctaactagctatgatgtgttgatgttgtccagttttatacatctaagccaattagtttgctctctagctagcttattattgtttagagctcacaacttataggaaactaggaattgtcattgcttttacatacttactggaattaaatggcaggagtgctgcatatgcctggctcagtacaaggagaaggaggaggtgaggcagctgccgtgcacgcacatgttccacctgaaatgcgtggacaggtggctcaggatcatctcctcttgccctctctgcaagcaagagctcagctagaaaaacaagctgacatgaatacggagctactgataacgcgccttccgacgcatgcgtcgcacctcacggaagaagAaaaagaaaagaaaaaaaaaccctggcacgccaaccatgcgtgcactgacctagttcgatattgctgatgacggcacgatgaatatttatgcatacacttgcatgtgAAaaagatatgcttggattaattaggctaggtagacaagcgggaaatgtgtAaaagagtttttttttttttttgtgtgtgtgtgtgttgtttgcggtgttgttgcatctctcgaatgtggtcgatcgagatgcgcgtgtacgtaGtttttttcagcagaaaccaaacgagaacatataccagggtttgcgctcgtgctccagcgaatgccaacccaaaggtattcggcccggtcgaaactactacagtactgtattctaggcctggctcagagtgggccaacattttcggcccagtttattgacctactggccagcctataattatcaatc
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| CDS seq | atgcggccgccctcgtcgtcggcgacgcccgggacgggccgggtgtcggcgttcacgatgcgcgcggtggcgcgcatgtcgagggcgcggtggttcatcttcctgaggcgggtgtaccagtaccagaacggcccgaggtccgacctgggctccaaccccttcaactcgcccggctggctcgccctcgagctcggcgtgatcatggcgcagatggtcgtcaccaccgccgtcgtcgccacctcccccaaggagcgccccgcgtggccgctccgggtttgggtcgccgcctacaacgtgggcaacgtgctcagcctccccctcctctactggcgccaccggcattcctcctccggcgcccgcggcggcacgctctccgacgatcccgagatgcacggcgccaacgaccctctaaggaacaggtcgtatctgatgaacaaggcacgggcgttcctggagctgttcttcgcgatgtggttcgtgatgggcaacgtgtgggtgttcgacgcgcggctcgggtcgttccaccgcgcgccgaggctgtacgcgctctgcatcggcctcctcgcatggaacgccgtcgtctactcgctcccattcctcctcttcctcctgctctgctgcttcgtcccggccgtcggctacgcgctcgggtacaacatgaactccgcgtccgtcggccggggcgcctccgacgagcagctcgccgcgctgccgcagtggcggttcaaggagccggccgacgcgccgagagaccgcgaccacgacgatcaggagtgctgcatatgcctggctcagtacaaggagaaggaggaggtgaggcagctgccgtgcacgcacatgttccacctgaaatgcgtggacaggtggctcaggatcatctcctcttgccctctctgcaagcaagagctcagctag
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| Protein seq | MRPPSSSATPGTGRVSAFTMRAVARMSRARWFIFLRRVYQYQNGPRSDLGSNPFNSPGWLALELGVIMAQMVVTTAVVATSPKERPAWPLRVWVAAYNVGNVLSLPLLYWRHRHSSSGARGGTLSDDPEMHGANDPLRNRSYLMNKARAFLELFFAMWFVMGNVWVFDARLGSFHRAPRLYALCIGLLAWNAVVYSLPFLLFLLLCCFVPAVGYALGYNMNSASVGRGASDEQLAALPQWRFKEPADAPRDRDHDDQECCICLAQYKEKEEVRQLPCTHMFHLKCVDRWLRIISSCPLCKQELS |
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| Function | E3 ubiquitin-protein ligase At4g11680 [UniProtKB/Swiss-Prot:Q93Z92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0029770 | OsNaBo_01g0029770.01 | Chr01 | 29617188 | 29619312 | + | NAM | ||
| CDS seq | atgcggccgccctcgtcgtcggcgacgcccgggacgggccgggtgtcggcgttcacgatgcgcgcggtggcgcgcatgtcgagggcgcggtggttcatcttcctgaggcgggtgtaccagtaccagaacggcccgaggtccgacctgggctccaaccccttcaactcgcccggctggctcgccctcgagctcggcgtgatcatggcgcagatggtcgtcaccaccgccgtcgtcgccacctcccccaaggagcgccccgcgtggccgctccgggtttgggtcgccgcctacaacgtgggcaacgtgctcagcctccccctcctctactggcgccaccggcattcctcctccggcgcccgcggcggcacgctctccgacgatcccgagatgcacggcgccaacgaccctctaaggaacaggtcgtatctgatgaacaaggcacgggcgttcctggagctgttcttcgcgatgtggttcgtgatgggcaacgtgtgggtgttcgacgcgcggctcgggtcgttccaccgcgcgccgaggctgtacgcgctctgcatcggcctcctcgcatggaacgccgtcgtctactcgctcccattcctcctcttcctcctgctctgctgcttcgtcccggccgtcggctacgcgctcgggtacaacatgaactccgcgtccgtcggccggggcgcctccgacgagcagctcgccgcgctgccgcagtggcggttcaaggagccggccgacgcgccgagagaccgcgaccacgacgatcaggagtgctgcatatgcctggctcagtacaaggagaaggaggaggtgaggcagctgccgtgcacgcacatgttccacctgaaatgcgtggacaggtggctcaggatcatctcctcttgccctctctgcaagcaagagctcagctag
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| Protein seq | MRPPSSSATPGTGRVSAFTMRAVARMSRARWFIFLRRVYQYQNGPRSDLGSNPFNSPGWLALELGVIMAQMVVTTAVVATSPKERPAWPLRVWVAAYNVGNVLSLPLLYWRHRHSSSGARGGTLSDDPEMHGANDPLRNRSYLMNKARAFLELFFAMWFVMGNVWVFDARLGSFHRAPRLYALCIGLLAWNAVVYSLPFLLFLLLCCFVPAVGYALGYNMNSASVGRGASDEQLAALPQWRFKEPADAPRDRDHDDQECCICLAQYKEKEEVRQLPCTHMFHLKCVDRWLRIISSCPLCKQELS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.291648 | 2.711282 | 3.511615 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0703300 | RBH | 0.0 | 0.0 | 1.555396 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50750 | RBH | 0.0 | 0.0 | 0.293565 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0703300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030570 | RBH | 0.0 | 6.267709 | 1.732989 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030170 | RBH | 0.0 | 1.109427 | 0.219423 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030540 | RBH | 0.0 | 4.579167 | 2.718306 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029820 | RBH | 0.0 | 0.040402 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029480 | RBH | 0.715540 | 0.000000 | 4.619503 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0483200 | RBH | 1.3860515 | 0.7020505 | 0.0418375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029220 | RBH | 0.0 | 0.457802 | 0.526994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0474100 | RBH | 1.006317 | 0.387835 | 0.0632875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029460 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029410 | RBH | 0.0 | 2.064960 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029820 | RBH | 0.126771 | 0.283793 | 1.104105 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029630 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030070 | RBH | 0.0 | 0.0 | 2.802054 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025690 | SBH | 1.721470 | 8.180983 | 4.406571 |
