Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g41780 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23648265-23651499 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTAATGCCAATAATATGTTTAGAAAGCACATACTGAGATATGTAGTGCTTGTAAAGTACATATACATGTCAAAGTTTACAGTGAAAACTTGTACTGTATTTCTCACAAAAACAAAAGGTGCAGAACAAAGATCAAATCATACCATGATACAGTTTAAGTACATGAACGGTACAGGTATTATTAAAGAGCTTCTTGGTTACAATATCTCTCTCTTTAGAACTACTACTCTGTTAAAAAAAAATGATGCGCACATCACAAGAAAAAAAAGAAGAGTATGAAAAGATATGCAGTGGAATAAAACATCCATAGTTCTTCATAGGAATTTTCTTATCAAAACAGCCTTACTGACAGCTGCTTGCACATATATCTTGTCATATATCTGATCAAAAAACTGAAAATAAGCGATCCTCCATGATTTCTTGAACAGGATGGTGCAGAACACTATCCAGAGCCCCACCACAAACCCTGCACTTGTGCTGATGTACAAATATGTTGTATCATGTGATGCGTCATCATGTTCATTCTGGACAATTTTGTTTGTTCTGTTCGTGGAACAATTGGTGGAAAGAGGAAGTCCACAAAGTCCAGGATTGCCGATGTACATATAAAGATTATTAAGTGTTTGTAGCTGTTGTCCTGAGGGGATTCTTCCTGATAGATTGTTGTAGGACAAGTTTAAGCAGCTCAAAAAAGTAAGGTCTGATAAAATCGAGGGGATTTCACCAACTAAATCATTGTAGGATAGGTCCAGGGACTCCAATCTCCTTAAAATGCCAATATCATTTGGAATTGTTCCACTTAATTGATTGCCTGATAGATTCAAACTTTGAAGCCCCTTGAGTAGAGTTAATTCTCTTGGAATAGGTCCAGTGAAACTATTGTACGACATGTCAATCAACATAATATTATTTGTGGATTGAAAGGTATAGTTAAGCTCCTGGTCTTTTATGGACATGGATATGCTAGCACCAGTGTAGTTGTCCAACCCTGATGTGTGTGAATATTTCATGGCTGTCAAGCTTCTTATAGATGAATATATACTTCCTGATATGTTGTTATGTGCTACATCGAGAAAATGAAGTTGATCAAGCTTGTTTAATTGGTTAGAAAGGTTACCACAAAACATGTTCGATCTTAGAATCAAAACTTCCAGGTAAGGCATTCTCTGTGCAATCCATGTTGGGACATTTCCAGACAACTTGTTATATGAAAGGTCAAGAAATAATAACCAACCAGCATTTTGAAGGAAGCTAGGGAATTCACCAGATAGATTGTTATTCTTCATATCTATAACCAAGAATGAGAAACCAAATTGATCCACTGAACATTGTGGGATTTCCCCTGTTAGTTGATTGTATGACAGATTTATTACTCTCAAACTCCGCAGTTGACACAAACAAGCTGGAATAGTGCCTCCAATTTGATTGTGGTGAAGATGCAGTGTCATTAGATTGGGAACAGTGAGATTTGCTGGTAACTTCCCTGACAAATAATTATCGGAGAGATCCATTGCTTGCATTGATGGCAGTTCCAATTTCTCTGGTAAAGCTCCACCCAGTTGATTGCTTGACAGGTACAATTCATAAGCATTATATGAAACAGTCCAAAACCAGCCAGGCAAGTCATCCTTTATGCTTGTATTTGAAATATCAAGGACAACTATATCAGTTTGCCATCTTAGCCATGAAGGGAACTGAGGGCCCAAGTCACATGACTCAAAATATCCCTTCTTTAATTTAAAGGGAGGAATCCAAGCTTCATGTAAATCTAATTTCAGCGAGTTGCTTGAAAGGTCCAAAAATTCCAGTCTTTCTAGAGTTGCAAAATGGTATTCTGCGAGCACACCACTGAAGCTATTTTGGCCAAGGTTCAAGCTAGTCAAGTTGCCAAATGCCCCAATCCCAACAGGTATATGGCCAACCAGTGAGTTCTGAGAGAGGTCAAGATAGTTGAGATTTGTCAGATTTCCCGTTCCATCAGGTACAGAGCCAACAATCATGTTCTCAGAAAGATCAAGATAACTGAGACTTGCTAGATGTCCTATCCAAGTTGGTAGTTCCCCTGTCAAATTTGCACAATGCAGGTCCATCTTACGCAACTTATTCCATGAACACTTCGGCAATCTCTCCATCAGTTCTGATATGGAACTGTTAATATTAATGTCGTATAAATCCAGCTCTTGTAAATTACACAGATTTTTCATTGTTGTTGGTATGTTACCCGATAAATCGGTGCCATGCAGAACTATGGACTCAAGGGCAATGCATCAGGAATTGGCCCGGACCAGGCACAATCATATAGAAAGAGCTTTTTAAGTGTAGTGAGATCCCAAAACCAGTTGTGTGCGAGAGGAGAGCTAAACAGATTAATGTTAAATCTAGGACTTCAAGATGTGTGAGATTGGAATGAGATAGAGTAGAGACGGTATTGTTAAGCCCACAGCTAGATAAGACAAGGACTTGAAGAGAAGGAAGCTTGTTCACCGCATGGACCCAATTCCTTTCGGAACTGAGGTCCACCGTGGATAAATCAAGATAGCTTAAAAAAGGGAGACCCATTAACCATGAAAGATCTGAAACACTCAGACTATGGGAATTGCCAAGATCAAGGTATTGCAGATTCGAGAGGTTACCAAGCTGAGAAGGCAGAGTTCCCCAAAAATTTGCAGCGGAGAGGTTGAGATACCTCAAGTTGCTGAGTGAACCCAGAAAATCAGGTATGCTTGTAAAATTGAAGTGATTGTAGCTTAGATCAAGATACCTCAAGTGATGCAAATCAACAATAGAAGGGCTCATCTCACTGGTTGACAAGATCAGCCCATTGCTCCAATCGTCTTCGTCTGTGTTGCGGAGGTCGAGCCTGACGACATGCCCAGTTGTGTTGTCGCATCGGACTCCCTTCCACCGGCAGCAGTCTTCGCCCCGCCATGAATAAAGGCGGCCAGCACGATCCCAAAAGCTATCCTTGAAGGTCAGGAGCGCCTTCCGCTCACTCGGAATGCAACTCCCGCTGACGGCGGGCCGTGTCACTGTCGTCGTGCTTGCAGGATGGAAAGAAGAGGCGGATTGTGCTACGGAGACAAAAAGGAACACGAGTATTGCACTCGCAGTGGCTCTTTGCGTAAGGAGCGTGGGAGCAATCATTTTTTGGTAGGCTTTTCTGCTGTCAGGAAACTGCTAGAGAAGCGGCATTACAGTAGCTTCATGCCTTCATCACTAGTACTAGATTTTTT
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| CDS seq | ATGAAAAATCTGTGTAATTTACAAGAGCTGGATTTATACGACATTAATATTAACAGTTCCATATCAGAACTGATGGAGAGATTGCCGAAGTGTTCATGGAATAAGTTGCGTAAGATGGACCTGCATTGTGCAAATTTGACAGGGGAACTACCAACTTGGATAGGACATCTAGCAAGTCTCAGTTATCTTGATCTTTCTGAGAACATGATTGTTGGCTCTGTACCTGATGGAACGGGAAATCTGACAAATCTCAACTATCTTGACCTCTCTCAGAACTCACTGGTTGGCCATATACCTGTTGGGATTGGGGCATTTGGCAACTTGACTAGCTTGAACCTTGGCCAAAATAGCTTCAGTGGTGTGCTCGCAGAATACCATTTTGCAACTCTAGAAAGACTGGAATTTTTGGACCTTTCAAGCAACTCGCTGAAATTAGATTTACATGAAGCTTGGATTCCTCCCTTTAAATTAAAGAAGGGATATTTTGAGTCATGTGACTTGGGCCCTCAGTTCCCTTCATGGCTAAGATGGCAAACTGATATAGTTGTCCTTGATATTTCAAATACAAGCATAAAGGATGACTTGCCTGGCTGGTTTTGGACTGTTTCATATAATGCTTATGAATTGTACCTGTCAAGCAATCAACTGGGTGGAGCTTTACCAGAGAAATTGGAACTGCCATCAATGCAAGCAATGGATCTCTCCGATAATTATTTGTCAGGGAAGTTACCAGCAAATCTCACTGTTCCCAATCTAATGACACTGCATCTTCACCACAATCAAATTGGAGGCACTATTCCAGCTTGTTTGTGTCAACTGCGGAGTTTGAGAGTAATAAATCTGTCATACAATCAACTAACAGGGGAAATCCCACAATGTTCAGTGGATCAATTTGGTTTCTCATTCTTGGTTATAGATATGAAGAATAACAATCTATCTGGTGAATTCCCTAGCTTCCTTCAAAATGCTGGTTGGTTATTATTTCTTGACCTTTCATATAACAAGTTGTCTGGAAATGTCCCAACATGGATTGCACAGAGAATGCCTTACCTGGAAGTTTTGATTCTAAGATCGAACATGTTTTGTGGTAACCTTTCTAACCAATTAAACAAGCTTGATCAACTTCATTTTCTCGATGTAGCACATAACAACATATCAGGAAGTATATATTCATCTATAAGAAGCTTGACAGCCATGAAATATTCACACACATCAGGGTTGGACAACTACACTGGTGCTAGCATATCCATGTCCATAAAAGACCAGGAGCTTAACTATACCTTTCAATCCACAAATAATATTATGTTGATTGACATGTCGTACAATAGTTTCACTGGACCTATTCCAAGAGAATTAACTCTACTCAAGGGGCTTCAAAGTTTGAATCTATCAGGCAATCAATTAAGTGGAACAATTCCAAATGATATTGGCATTTTAAGGAGATTGGAGTCCCTGGACCTATCCTACAATGATTTAGTTGGTGAAATCCCCTCGATTTTATCAGACCTTACTTTTTTGAGCTGCTTAAACTTGTCCTACAACAATCTATCAGGAAGAATCCCCTCAGGACAACAGCTACAAACACTTAATAATCTTTATATGTACATCGGCAATCCTGGACTTTGTGGACTTCCTCTTTCCACCAATTGTTCCACGAACAGAACAAACAAAATTGTCCAGAATGAACATGATGACGCATCACATGATACAACATATTTGTACATCAGCACAAGTGCAGGGTTTGTGGTGGGGCTCTGGATAGTGTTCTGCACCATCCTGTTCAAGAAATCATGGAGGATCGCTTATTTTCAGTTTTTTGATCAGATATATGACAAGATATATGTGCAAGCAGCTGTCAGTAAGGCTGTTTTGATAAGAAAATTCCTATGA
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| Protein seq | MKNLCNLQELDLYDININSSISELMERLPKCSWNKLRKMDLHCANLTGELPTWIGHLASLSYLDLSENMIVGSVPDGTGNLTNLNYLDLSQNSLVGHIPVGIGAFGNLTSLNLGQNSFSGVLAEYHFATLERLEFLDLSSNSLKLDLHEAWIPPFKLKKGYFESCDLGPQFPSWLRWQTDIVVLDISNTSIKDDLPGWFWTVSYNAYELYLSSNQLGGALPEKLELPSMQAMDLSDNYLSGKLPANLTVPNLMTLHLHHNQIGGTIPACLCQLRSLRVINLSYNQLTGEIPQCSVDQFGFSFLVIDMKNNNLSGEFPSFLQNAGWLLFLDLSYNKLSGNVPTWIAQRMPYLEVLILRSNMFCGNLSNQLNKLDQLHFLDVAHNNISGSIYSSIRSLTAMKYSHTSGLDNYTGASISMSIKDQELNYTFQSTNNIMLIDMSYNSFTGPIPRELTLLKGLQSLNLSGNQLSGTIPNDIGILRRLESLDLSYNDLVGEIPSILSDLTFLSCLNLSYNNLSGRIPSGQQLQTLNNLYMYIGNPGLCGLPLSTNCSTNRTNKIVQNEHDDASHDTTYLYISTSAGFVVGLWIVFCTILFKKSWRIAYFQFFDQIYDKIYVQAAVSKAVLIRKFL |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g41780 | LOC_Os01g41780.1 | Chr01 | 23648265 | 23651499 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAAAATCTGTGTAATTTACAAGAGCTGGATTTATACGACATTAATATTAACAGTTCCATATCAGAACTGATGGAGAGATTGCCGAAGTGTTCATGGAATAAGTTGCGTAAGATGGACCTGCATTGTGCAAATTTGACAGGGGAACTACCAACTTGGATAGGACATCTAGCAAGTCTCAGTTATCTTGATCTTTCTGAGAACATGATTGTTGGCTCTGTACCTGATGGAACGGGAAATCTGACAAATCTCAACTATCTTGACCTCTCTCAGAACTCACTGGTTGGCCATATACCTGTTGGGATTGGGGCATTTGGCAACTTGACTAGCTTGAACCTTGGCCAAAATAGCTTCAGTGGTGTGCTCGCAGAATACCATTTTGCAACTCTAGAAAGACTGGAATTTTTGGACCTTTCAAGCAACTCGCTGAAATTAGATTTACATGAAGCTTGGATTCCTCCCTTTAAATTAAAGAAGGGATATTTTGAGTCATGTGACTTGGGCCCTCAGTTCCCTTCATGGCTAAGATGGCAAACTGATATAGTTGTCCTTGATATTTCAAATACAAGCATAAAGGATGACTTGCCTGGCTGGTTTTGGACTGTTTCATATAATGCTTATGAATTGTACCTGTCAAGCAATCAACTGGGTGGAGCTTTACCAGAGAAATTGGAACTGCCATCAATGCAAGCAATGGATCTCTCCGATAATTATTTGTCAGGGAAGTTACCAGCAAATCTCACTGTTCCCAATCTAATGACACTGCATCTTCACCACAATCAAATTGGAGGCACTATTCCAGCTTGTTTGTGTCAACTGCGGAGTTTGAGAGTAATAAATCTGTCATACAATCAACTAACAGGGGAAATCCCACAATGTTCAGTGGATCAATTTGGTTTCTCATTCTTGGTTATAGATATGAAGAATAACAATCTATCTGGTGAATTCCCTAGCTTCCTTCAAAATGCTGGTTGGTTATTATTTCTTGACCTTTCATATAACAAGTTGTCTGGAAATGTCCCAACATGGATTGCACAGAGAATGCCTTACCTGGAAGTTTTGATTCTAAGATCGAACATGTTTTGTGGTAACCTTTCTAACCAATTAAACAAGCTTGATCAACTTCATTTTCTCGATGTAGCACATAACAACATATCAGGAAGTATATATTCATCTATAAGAAGCTTGACAGCCATGAAATATTCACACACATCAGGGTTGGACAACTACACTGGTGCTAGCATATCCATGTCCATAAAAGACCAGGAGCTTAACTATACCTTTCAATCCACAAATAATATTATGTTGATTGACATGTCGTACAATAGTTTCACTGGACCTATTCCAAGAGAATTAACTCTACTCAAGGGGCTTCAAAGTTTGAATCTATCAGGCAATCAATTAAGTGGAACAATTCCAAATGATATTGGCATTTTAAGGAGATTGGAGTCCCTGGACCTATCCTACAATGATTTAGTTGGTGAAATCCCCTCGATTTTATCAGACCTTACTTTTTTGAGCTGCTTAAACTTGTCCTACAACAATCTATCAGGAAGAATCCCCTCAGGACAACAGCTACAAACACTTAATAATCTTTATATGTACATCGGCAATCCTGGACTTTGTGGACTTCCTCTTTCCACCAATTGTTCCACGAACAGAACAAACAAAATTGTCCAGAATGAACATGATGACGCATCACATGATACAACATATTTGTACATCAGCACAAGTGCAGGGTTTGTGGTGGGGCTCTGGATAGTGTTCTGCACCATCCTGTTCAAGAAATCATGGAGGATCGCTTATTTTCAGTTTTTTGATCAGATATATGACAAGATATATGTGCAAGCAGCTGTCAGTAAGGCTGTTTTGATAAGAAAATTCCTATGA
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| Protein seq | MKNLCNLQELDLYDININSSISELMERLPKCSWNKLRKMDLHCANLTGELPTWIGHLASLSYLDLSENMIVGSVPDGTGNLTNLNYLDLSQNSLVGHIPVGIGAFGNLTSLNLGQNSFSGVLAEYHFATLERLEFLDLSSNSLKLDLHEAWIPPFKLKKGYFESCDLGPQFPSWLRWQTDIVVLDISNTSIKDDLPGWFWTVSYNAYELYLSSNQLGGALPEKLELPSMQAMDLSDNYLSGKLPANLTVPNLMTLHLHHNQIGGTIPACLCQLRSLRVINLSYNQLTGEIPQCSVDQFGFSFLVIDMKNNNLSGEFPSFLQNAGWLLFLDLSYNKLSGNVPTWIAQRMPYLEVLILRSNMFCGNLSNQLNKLDQLHFLDVAHNNISGSIYSSIRSLTAMKYSHTSGLDNYTGASISMSIKDQELNYTFQSTNNIMLIDMSYNSFTGPIPRELTLLKGLQSLNLSGNQLSGTIPNDIGILRRLESLDLSYNDLVGEIPSILSDLTFLSCLNLSYNNLSGRIPSGQQLQTLNNLYMYIGNPGLCGLPLSTNCSTNRTNKIVQNEHDDASHDTTYLYISTSAGFVVGLWIVFCTILFKKSWRIAYFQFFDQIYDKIYVQAAVSKAVLIRKFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.188767 | 0.0 | 0.329391 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0601700 | RBH | 0.294044 | 0.0 | 1.347924 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41750 | SBH | 0.137166 | 0.232402 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0601700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024300 | SBH | 0.097523 | 0.0 | 0.252339 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023870 | RBH | 0.0 | 0.871613 | 0.333286 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024190 | RBH | 0.0 | 0.885465 | 0.211562 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023540 | RBH | 0.025093 | 0.039633 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023330 | RBH | 0.000000 | 2.229179 | 2.133956 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0395800 | RBH | 0.083564 | 0.830832 | 0.0183955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023240 | RBH | 0.015733 | 0.067010 | 0.040080 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0564700 | SBH | 37.283126 | 156.0121385 | 68.0994685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023220 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023490 | RBH | 0.0 | 0.047995 | 0.046283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023570 | SBH | 0.038315 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023280 | SBH | 0.000000 | 0.449103 | 0.089174 |
