Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsY3551G0100183300.01 | OGI:01014490 | 49/50 | Os XI-1B: Y3551 | Y3551 | SICAU | Chr01:3939724-3942924 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | CN1_Y3551_INS0105880,02428_Y3551_INS0108280,G46_Y3551_INS0104660,Azucena_Y3551_INS0106970,Kosh_Y3551_INS0107000,KY131_Y3551_INS0107070,Nipponbare_Y3551_INS0106700,132278_Y3551_INS0107630,NamRoo_Y3551_INS0107720,127652_Y3551_INS0106910,ZH11_Y3551_INS0107220,DHX2_Y3551_INS0106890,117425_Y3551_INS0106640,OglaRS2_Y3551_INS0106590,117534_Y3551_INS0107490,Lemont_Y3551_INS0106420,TM_Y3551_INS0104960,R498_Y3551_INS0104850,LJ_Y3551_INS0107170,128077_Y3551_INS0105120,
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| DNA seq | ATCCAACTTTATTCTCCTCTTCCTTCTCCCAAAACTCTCCCTTAAAAAGAAGCTGATTCCCCATCTGATCCCTCATCAAAACCCTTCTCACATTCGATCTCGATCACTCACACTTACACTCGCAGTTTGCACAGCTACTTCATCTCAAGTAGTAGTAGTGATATACTAGCTAGATCGGTCGGCTATTTGCTGTAGCTAGCTAGCGTGAGCTAGCTTGGTTTGTAGAGCTTGTGTACTTGGAGGGAGGAGATCGATAGCCATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCGTGAGCTCCCTCTCTGCATGCAGCTTCTCAATCATGGTGAGTAATTGTATGTAACCTAAGCTAAATCGATCGCCATGGCTAACCCTAGCGAGGATTGGTGTGTGTTTGCAGCTATGGAGGCGTACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATGGCGCGGCGGCGGCGGCGGCGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACGTCGTGGCGGCGGACAAGGCGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCCGAGAAGGCGAGCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGGCGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCCCCAAGCTGATCACCGCGCTCGACGGCGGCGGCGGCGGCGGCGCGTTCCTGCCCTTCTCCAAGGACAACGCCATGGGTGACGGATCAGCCGCCGCCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGGCGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACGGCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCACCGGACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGCCGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGGTACAGTACACCTACACATGTAACTCGATCAAGATCGAACACCATGATTACATGCCGTACCAAAGATGAAAAGACAGCAAACAAATTAATCTTGAGCTTGCGTTTTTGTTTTGTTCTTTGCAAATTAAAGTGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGGTAGGGTAATTATCATCTCATCATGCAATTCATCCATCTCACGTACGTTCTTAATTAAATACTGTTTAAATTGATCATTGACTACAAGACAGTATGATTAACTGATTGCTAGACATGAATGCCATAATGAGCATTTTGATCTGAATTTTTTTTTGTTTGGGCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCCGACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCTGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACGACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAATTAATCAACCAAACCAACCAATCAAATCACCACGCGTCGTAATTAATTACTCATTAGTAGTAGTACTAGCTAGTAGCTTAATTAATCGCGCTAATCCGGGAGATTAATTAGCGTCACCTGGAAAAAGGGAAAAGTGATTTTTTGTTGGCGCGCGCGCGCGGAGAACGGGAGCCGAGCCGAGCCGAGCCGACCAGAGAAGGAGCAGGAGCTTGAGCTTGTCTCACTCGTTGATGTGATGCATATGTATGGAACTATGGATCGATGGATAATGTGAGGGCTTTACTTTGCTTTTGCTTTTGCTGGTTTTTTTTCTCCCTCTTGTTTTTCTTCCTTTTTTGGGACTCTCAGCTGTTCCTGATTTAATAATCCGGTAGTACTAGTAGTAAATATCAAAATTATGTGATGGTGGAGAGATTAAATATGAGCTAGATGTAATTGTTTGGGAGATTATGGGCCTGTTTGGTTGGCAACCTGAGTGATGTGCCTAAGAAAACTACATGCCTAAGAGGCATTAGCTATCCTGTCAAAACTTGCCTGATGAGGCTAGCCTGAGCAAATGTTGTTTGGTTAGTAGCCTAAGCCTGAGGAAACTAAATTGAGATTAGATGGTTCATAATTACATGGTTAAGGTAGATATTATTTAAATAAAACGGTATCTTATATCCTAATCTATCGCATATAAGCAAATGTTGTATTTTCGGTTCGTTTGCACCAACCAAGATTCAACAATAAAATATTCCAACACCTTTTGCATGCACAGTCGTGGGCCCGTGACAGGACAAGCTTGATTAGCGCGTTTTGTTTTGTGTAACTAGACTGAGCCAGGCGCTCGTTTTTGGTGGCCTGAGCTAGGCTAATGAACCTATCAGGTTTTTCAGGTCAGGCAGAGAATGAAACCATCAGGCTACCAACCAAACGACACAGGATATCCCTCAGGGACATATCAGGCCAGGCTCTTTTGGCTCAGGGCTTCAACCAAACAGCCCCTATGTTTGTTGTTGTTGTTAAGTTGAGAATTGTGAAGAGCCAACAATAATGCATAATGCAGG
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| CDS seq | MASSSSDLTLDDHHHLTAVAAASGQATQKLQEFLSRLEEERLKIDAFKRELPLCMQLLNHAMEAYRQQLEAYQMGSQHGAAAAAAARAPLVLEEFIPVKNIGIDVVAADKAAAAAGGNSVSSEKASWMVSAQLWNAPASASAADTAAKGPQTPKEHSEHHPLDTSPKLITALDGGGGGGAFLPFSKDNAMGDGSAAAAAALPELALAPAEKAADAITIAAGEVDKKPYAHDNGVVARSREAQNGGKPPSTPPDGQAVPPPPQPHRKARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPMPSPAPPTAATPQLVVLGGIWVPPEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHRAVAPPPPLPPQQQLAPPYSAKSSASARLGSPDSDGRGSGGGGGAAASGAGRDMSESIEEEGEGEEREDDDDDDEMAATNNAHAVDGDDDDDEINTTTTTSAGAINY
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| Protein seq | MASSSSDLTLDDHHHLTAVAAASGQATQKLQEFLSRLEEERLKIDAFKRELPLCMQLLNHAMEAYRQQLEAYQMGSQHGAAAAAAARAPLVLEEFIPVKNIGIDVVAADKAAAAAGGNSVSSEKASWMVSAQLWNAPASASAADTAAKGPQTPKEHSEHHPLDTSPKLITALDGGGGGGAFLPFSKDNAMGDGSAAAAAALPELALAPAEKAADAITIAAGEVDKKPYAHDNGVVARSREAQNGGKPPSTPPDGQAVPPPPQPHRKARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPMPSPAPPTAATPQLVVLGGIWVPPEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHRAVAPPPPLPPQQQLAPPYSAKSSASARLGSPDSDGRGSGGGGGAAASGAGRDMSESIEEEGEGEEREDDDDDDEMAATNNAHAVDGDDDDDEINTTTTTSAGAINY |
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| Function | Transcription factor NIGTH1 [UniProtKB/Swiss-Prot:Q5VRW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsY3551G0100183300.01 | OsY3551G0100183300.01.T02 | Chr01 | 3939724 | 3942924 | + | IGDBv1 | ||
| CDS seq | ATGGCTTCTTCGTCTTCTGACCTAACCCTAGACGACCACCACCATCTGACGGCGGTGGCTGCGGCGTCGGGGCAGGCGACGCAGAAGCTTCAGGAGTTCTTGTCACGTCTCGAGGAAGAGAGGCTCAAGATCGACGCCTTCAAGCCTATGGAGGCGTACAGGCAGCAGCTGGAGGCGTACCAGATGGGGAGCCAGCATGGCGCGGCGGCGGCGGCGGCGGCGAGGGCGCCGCTGGTGCTCGAGGAGTTCATACCGGTGAAGAACATCGGGATCGACGTCGTGGCGGCGGACAAGGCGGCGGCGGCGGCGGGGGGCAACAGCGTGTCGTCCGAGAAGGCGAGCTGGATGGTGTCGGCGCAGCTGTGGAACGCGCCGGCGTCGGCGTCGGCGGCGGACACGGCGGCGAAGGGGCCCCAGACGCCCAAGGAGCACTCGGAGCACCACCCGCTCGACACGAGCCCCAAGCTGATCACCGCGCTCGACGGCGGCGGCGGCGGCGGCGCGTTCCTGCCCTTCTCCAAGGACAACGCCATGGGTGACGGATCAGCCGCCGCCGCCGCCGCGCTGCCGGAGCTCGCGCTCGCGCCCGCGGAGAAGGCGGCGGACGCGATCACCATCGCCGCCGGCGAGGTCGACAAGAAGCCGTACGCCCACGACAACGGCGTCGTGGCGAGATCGAGAGAAGCCCAGAACGGCGGGAAGCCGCCGTCGACGCCACCGGACGGGCAGGCCGTCCCGCCGCCGCCACAGCCCCACCGGAAGGCGCGCCGTTGCTGGTCGCCGGAGCTGCACCGCCGCTTCGTCAATGCTCTTCAGATCCTCGGCGGCGCCCAAGTGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAGCGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTACGGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCTGCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGCTGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCCGACTCCGACGGCCGTGGCAGCGGCGGCGGCGGCGGCGCCGCTGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGAGGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACGACGACGAGATCAACACCACCACCACCACGAGCGCGGGAGCGATTAACTACTAA
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| Protein seq | MASSSSDLTLDDHHHLTAVAAASGQATQKLQEFLSRLEEERLKIDAFKPMEAYRQQLEAYQMGSQHGAAAAAAARAPLVLEEFIPVKNIGIDVVAADKAAAAAGGNSVSSEKASWMVSAQLWNAPASASAADTAAKGPQTPKEHSEHHPLDTSPKLITALDGGGGGGAFLPFSKDNAMGDGSAAAAAALPELALAPAEKAADAITIAAGEVDKKPYAHDNGVVARSREAQNGGKPPSTPPDGQAVPPPPQPHRKARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPMPSPAPPTAATPQLVVLGGIWVPPEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHRAVAPPPPLPPQQQLAPPYSAKSSASARLGSPDSDGRGSGGGGGAAASGAGRDMSESIEEEGEGEEREDDDDDDEMAATNNAHAVDGDDDDDEINTTTTTSAGAINY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0176700 | RBH | 0.000000 | 0.642978 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08160 | RBH | 0.000000 | 0.404027 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0176700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005620 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005310 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005570 | RBH | 0.364364 | 0.0 | 0.289707 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005210 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005440 | RBH | 0.529775 | 7.176380 | 0.532452 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0070000 | RBH | 1.353037 | 4.1661305 | 1.4607985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005390 | RBH | 0.097931 | 0.0 | 0.062371 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0070300 | RBH | 0.9218925 | 2.0295345 | 2.010854 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005450 | RBH | 1.158349 | 5.717571 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005390 | RBH | 0.0 | 0.151476 | 0.951886 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005370 | RBH | 0.059750 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005410 | RBH | 0.0 | 0.000000 | 0.170597 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005290 | RBH | 0.677130 | 0.0 | 0.377362 |
| Os XI: R9311 | R9311 | AGIS | R9311C01g01127 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_01g0061400 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_01g0061000 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_01g0061500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_01g0057500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0100194500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0100508700.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_000564 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0100499900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0100420500.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0100184900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0100185700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100138500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0100186900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0100187100.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0100185100.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0100182300.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0100431100.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0100187900.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0100184100.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0100149900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0100188300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0100180100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0100190100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0100256100.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0100317300.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0100726700.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0100187700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0100178100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0100182900.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0100184900.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0100268500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0100182900.01 | RBH | None | None | None |
