Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Azucena_Y3551_INS0106970

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-trop1: Azucena | AzucenaRS1

Os XI-1B: Y3551 | Y3551

Chr01

4094891

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3942328

3942862

29

Gene_id	Chromosome	Start	End
OsY3551G0100183300.01	Chr01	3939723	3942924

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Azucena_125619_INS0107400	Chr01	4094891	4094891	3948220	3948754	535
Azucena_127518_INS0106640	Chr01	4094891	4094891	3962533	3963067	535
Azucena_127564_INS0107270	Chr01	4094891	4094891	3877806	3878340	535
Azucena_127742_INS0107340	Chr01	4094891	4094891	3964052	3964586	535
Azucena_132424_INS0106050	Chr01	4094891	4094891	3897289	3897823	535
Azucena_Basmati1_INS0104740	Chr01	4094891	4094891	3913736	3914270	535
Azucena_D62_INS0107040	Chr01	4094891	4094891	3736873	3737407	535
Azucena_DG_INS0107290	Chr01	4094891	4094891	3730108	3730642	535
Azucena_FH838_INS0107030	Chr01	4094891	4094891	4231288	4231822	535
Azucena_FS32_INS0107430	Chr01	4094891	4094891	3879806	3880340	535
Azucena_G630_INS0106860	Chr01	4094891	4094891	3942339	3942873	535
Azucena_G8_INS0107300	Chr01	4094891	4094891	3966034	3966568	535
Azucena_HZ_INS0107510	Chr01	4094891	4094891	3973037	3973571	535
Azucena_II32_INS0107590	Chr01	4094891	4094891	3865892	3866426	535
Azucena_IR64_INS0107380	Chr01	4094891	4094891	3845676	3846210	535
Azucena_J4155_INS0106410	Chr01	4094891	4094891	3958666	3959200	535
Azucena_J4155S_INS0106340	Chr01	4094891	4094891	3971710	3972244	535
Azucena_LK638S_INS0106020	Chr01	4094891	4094891	4078992	4079526	535
Azucena_R527_INS0107490	Chr01	4094891	4094891	3957957	3958491	535
Azucena_R9311_INS0107660	Chr01	4094891	4094891	3958207	3958741	535
Azucena_S548_INS0107370	Chr01	4094891	4094891	3965902	3966436	535
Azucena_Tumba_INS0107010	Chr01	4094891	4094891	3872026	3872560	535
Azucena_WSSM_INS0107650	Chr01	4094891	4094891	3962184	3962718	535
Azucena_XL628S_INS0107750	Chr01	4094891	4094891	3861680	3862214	535
Azucena_Y3551_INS0106970	Chr01	4094891	4094891	3942328	3942862	535
Azucena_Y58S_INS0105740	Chr01	4094891	4094891	3959032	3959566	535
Azucena_YX1_INS0107750	Chr01	4094891	4094891	3866459	3866993	535
Azucena_ZS97RS3_INS0107510	Chr01	4094891	4094891	3876430	3876964	535
Azucena_MH63RS3_INS0106890	Chr01	4094891	4094891	3948257	3948791	535

>Azucena_Y3551_INS0106970
GGCCTGTTTGGTTGGCAACCTGAGTGATGTGCCTAAGAAAACTACATGCCTAAGAGGCATTAGCTATCCTGTCAAAACTTGCCTGATGAGGCTAGCCTGAGCAAATGTTGTTTGGTTAGTAGCCTAAGCCTGAGGAAACTAAATTGAGATTAGATGGTTCATAATTACATGGTTAAGGTAGATATTATTTAAATAAAACGGTATCTTATATCCTAATCTATCGCATATAAGCAAATGTTGTATTTTCGGTTCGTTTGCACCAACCAAGATTCAACAATAAAATATTCCAACACCTTTTGCATGCACAGTCGTGGGCCCGTGACAGGACAAGCTTGATTAGCGCGTTTTGTTTTGTGTAACTAGACTGAGCCAGGCGCTCGTTTTTGGTGGCCTGAGCTAGGCTAATGAACCTATCAGGTTTTTCAGGTCAGGCAGAGAATGAAACCATCAGGCTACCAACCAAACGACACAGGATATCCCTCAGGGACATATCAGGCCAGGCTCTTTTGGCTCAGGGCTTCAACCAAACAGCCCC