Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: CN1_Y3551_INS0105880

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Chr01

3822009

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3942328

3942862

29

Gene_id	Chromosome	Start	End
OsY3551G0100183300.01	Chr01	3939723	3942924

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
CN1_125619_INS0105210	Chr01	3822009	3822009	3948220	3948754	535
CN1_127518_INS0105380	Chr01	3822009	3822009	3962533	3963067	535
CN1_127564_INS0103840	Chr01	3822009	3822009	3877806	3878340	535
CN1_127742_INS0105290	Chr01	3822009	3822009	3964052	3964586	535
CN1_132424_INS0104940	Chr01	3822009	3822009	3897289	3897823	535
CN1_Basmati1_INS0105970	Chr01	3822009	3822009	3913736	3914270	535
CN1_D62_INS0102900	Chr01	3822009	3822009	3736873	3737407	535
CN1_DG_INS0102890	Chr01	3822009	3822009	3730108	3730642	535
CN1_FH838_INS0105900	Chr01	3822009	3822009	4231288	4231822	535
CN1_FS32_INS0103740	Chr01	3822009	3822009	3879806	3880340	535
CN1_G630_INS0105790	Chr01	3822009	3822009	3942339	3942873	535
CN1_G8_INS0105450	Chr01	3822009	3822009	3966034	3966568	535
CN1_HZ_INS0105430	Chr01	3822009	3822009	3973037	3973571	535
CN1_II32_INS0103930	Chr01	3822009	3822009	3865892	3866426	535
CN1_IR64_INS0104550	Chr01	3822009	3822009	3845676	3846210	535
CN1_J4155_INS0105500	Chr01	3822009	3822009	3958666	3959200	535
CN1_J4155S_INS0105590	Chr01	3822009	3822009	3971710	3972244	535
CN1_LK638S_INS0105790	Chr01	3822009	3822009	4078992	4079526	535
CN1_R527_INS0105460	Chr01	3822009	3822009	3957957	3958491	535
CN1_R9311_INS0105130	Chr01	3822009	3822009	3958207	3958741	535
CN1_S548_INS0105280	Chr01	3822009	3822009	3965902	3966436	535
CN1_Tumba_INS0105400	Chr01	3822009	3822009	3872026	3872560	535
CN1_WSSM_INS0105310	Chr01	3822009	3822009	3962184	3962718	535
CN1_XL628S_INS0103930	Chr01	3822009	3822009	3861680	3862214	535
CN1_Y3551_INS0105880	Chr01	3822009	3822009	3942328	3942862	535
CN1_Y58S_INS0105440	Chr01	3822009	3822009	3959032	3959566	535
CN1_YX1_INS0103940	Chr01	3822009	3822009	3866459	3866993	535
CN1_ZS97RS3_INS0103970	Chr01	3822009	3822009	3876430	3876964	535
CN1_MH63RS3_INS0105900	Chr01	3822009	3822009	3948257	3948791	535

>CN1_Y3551_INS0105880
GGCCTGTTTGGTTGGCAACCTGAGTGATGTGCCTAAGAAAACTACATGCCTAAGAGGCATTAGCTATCCTGTCAAAACTTGCCTGATGAGGCTAGCCTGAGCAAATGTTGTTTGGTTAGTAGCCTAAGCCTGAGGAAACTAAATTGAGATTAGATGGTTCATAATTACATGGTTAAGGTAGATATTATTTAAATAAAACGGTATCTTATATCCTAATCTATCGCATATAAGCAAATGTTGTATTTTCGGTTCGTTTGCACCAACCAAGATTCAACAATAAAATATTCCAACACCTTTTGCATGCACAGTCGTGGGCCCGTGACAGGACAAGCTTGATTAGCGCGTTTTGTTTTGTGTAACTAGACTGAGCCAGGCGCTCGTTTTTGGTGGCCTGAGCTAGGCTAATGAACCTATCAGGTTTTTCAGGTCAGGCAGAGAATGAAACCATCAGGCTACCAACCAAACGACACAGGATATCCCTCAGGGACATATCAGGCCAGGCTCTTTTGGCTCAGGGCTTCAACCAAACAGCCCC

Variation ID: CN1_Y3551_INS0105880

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1A: CN1 | CN1

Os XI-1B: Y3551 | Y3551

Chr01

3822009

3822009

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3942328

3942862

29