Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_Y3551_INS0106910

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os cA2: NATEL BORO | Os127652RS1

Os XI-1B: Y3551 | Y3551

Chr01

3895841

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3942328

3942862

29

Gene_id	Chromosome	Start	End
OsY3551G0100183300.01	Chr01	3939723	3942924

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_125619_INS0106170	Chr01	3895841	3895841	3948220	3948754	535
127652_127518_INS0106350	Chr01	3895841	3895841	3962533	3963067	535
127652_127564_INS0105780	Chr01	3895841	3895841	3877806	3878340	535
127652_127742_INS0106880	Chr01	3895841	3895841	3964052	3964586	535
127652_132424_INS0105700	Chr01	3895841	3895841	3897289	3897823	535
127652_Basmati1_INS0106410	Chr01	3895841	3895841	3913736	3914270	535
127652_D62_INS0104980	Chr01	3895841	3895841	3736873	3737407	535
127652_DG_INS0104840	Chr01	3895841	3895841	3730108	3730642	535
127652_FH838_INS0107160	Chr01	3895841	3895841	4231288	4231822	535
127652_FS32_INS0105660	Chr01	3895841	3895841	3879806	3880340	535
127652_G630_INS0107020	Chr01	3895841	3895841	3942339	3942873	535
127652_G8_INS0106920	Chr01	3895841	3895841	3966034	3966568	535
127652_HZ_INS0106810	Chr01	3895841	3895841	3973037	3973571	535
127652_II32_INS0105860	Chr01	3895841	3895841	3865892	3866426	535
127652_IR64_INS0106170	Chr01	3895841	3895841	3845676	3846210	535
127652_J4155_INS0106750	Chr01	3895841	3895841	3958666	3959200	535
127652_J4155S_INS0106850	Chr01	3895841	3895841	3971710	3972244	535
127652_LK638S_INS0106490	Chr01	3895841	3895841	4078992	4079526	535
127652_R527_INS0107000	Chr01	3895841	3895841	3957957	3958491	535
127652_R9311_INS0106850	Chr01	3895841	3895841	3958207	3958741	535
127652_S548_INS0107010	Chr01	3895841	3895841	3965902	3966436	535
127652_Tumba_INS0106380	Chr01	3895841	3895841	3872026	3872560	535
127652_WSSM_INS0106710	Chr01	3895841	3895841	3962184	3962718	535
127652_XL628S_INS0105750	Chr01	3895841	3895841	3861680	3862214	535
127652_Y3551_INS0106910	Chr01	3895841	3895841	3942328	3942862	535
127652_Y58S_INS0107000	Chr01	3895841	3895841	3959032	3959566	535
127652_YX1_INS0105760	Chr01	3895841	3895841	3866459	3866993	535
127652_ZS97RS3_INS0105890	Chr01	3895841	3895841	3876430	3876964	535
127652_MH63RS3_INS0107090	Chr01	3895841	3895841	3948257	3948791	535

>127652_Y3551_INS0106910
GGCCTGTTTGGTTGGCAACCTGAGTGATGTGCCTAAGAAAACTACATGCCTAAGAGGCATTAGCTATCCTGTCAAAACTTGCCTGATGAGGCTAGCCTGAGCAAATGTTGTTTGGTTAGTAGCCTAAGCCTGAGGAAACTAAATTGAGATTAGATGGTTCATAATTACATGGTTAAGGTAGATATTATTTAAATAAAACGGTATCTTATATCCTAATCTATCGCATATAAGCAAATGTTGTATTTTCGGTTCGTTTGCACCAACCAAGATTCAACAATAAAATATTCCAACACCTTTTGCATGCACAGTCGTGGGCCCGTGACAGGACAAGCTTGATTAGCGCGTTTTGTTTTGTGTAACTAGACTGAGCCAGGCGCTCGTTTTTGGTGGCCTGAGCTAGGCTAATGAACCTATCAGGTTTTTCAGGTCAGGCAGAGAATGAAACCATCAGGCTACCAACCAAACGACACAGGATATCCCTCAGGGACATATCAGGCCAGGCTCTTTTGGCTCAGGGCTTCAACCAAACAGCCCC