Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: LJ_Y3551_INS0107170

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Chr01

3879976

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3942328

3942862

29

Gene_id	Chromosome	Start	End
OsY3551G0100183300.01	Chr01	3939723	3942924

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
LJ_125619_INS0107320	Chr01	3879976	3879976	3948220	3948754	535
LJ_127518_INS0106890	Chr01	3879976	3879976	3962533	3963067	535
LJ_127564_INS0107440	Chr01	3879976	3879976	3877806	3878340	535
LJ_127742_INS0107130	Chr01	3879976	3879976	3964052	3964586	535
LJ_132424_INS0106390	Chr01	3879976	3879976	3897289	3897823	535
LJ_Basmati1_INS0103760	Chr01	3879976	3879976	3913736	3914270	535
LJ_D62_INS0106830	Chr01	3879976	3879976	3736873	3737407	535
LJ_DG_INS0107000	Chr01	3879976	3879976	3730108	3730642	535
LJ_FH838_INS0107140	Chr01	3879976	3879976	4231288	4231822	535
LJ_FS32_INS0107180	Chr01	3879976	3879976	3879806	3880340	535
LJ_G630_INS0107070	Chr01	3879976	3879976	3942339	3942873	535
LJ_G8_INS0106860	Chr01	3879976	3879976	3966034	3966568	535
LJ_HZ_INS0106820	Chr01	3879976	3879976	3973037	3973571	535
LJ_II32_INS0107300	Chr01	3879976	3879976	3865892	3866426	535
LJ_IR64_INS0107130	Chr01	3879976	3879976	3845676	3846210	535
LJ_J4155_INS0106460	Chr01	3879976	3879976	3958666	3959200	535
LJ_J4155S_INS0106430	Chr01	3879976	3879976	3971710	3972244	535
LJ_LK638S_INS0106060	Chr01	3879976	3879976	4078992	4079526	535
LJ_R527_INS0107200	Chr01	3879976	3879976	3957957	3958491	535
LJ_R9311_INS0107400	Chr01	3879976	3879976	3958207	3958741	535
LJ_S548_INS0107050	Chr01	3879976	3879976	3965902	3966436	535
LJ_Tumba_INS0107260	Chr01	3879976	3879976	3872026	3872560	535
LJ_WSSM_INS0106970	Chr01	3879976	3879976	3962184	3962718	535
LJ_XL628S_INS0107050	Chr01	3879976	3879976	3861680	3862214	535
LJ_Y3551_INS0107170	Chr01	3879976	3879976	3942328	3942862	535
LJ_Y58S_INS0106200	Chr01	3879976	3879976	3959032	3959566	535
LJ_YX1_INS0107150	Chr01	3879976	3879976	3866459	3866993	535
LJ_ZS97RS3_INS0107110	Chr01	3879976	3879976	3876430	3876964	535
LJ_MH63RS3_INS0107160	Chr01	3879976	3879976	3948257	3948791	535

>LJ_Y3551_INS0107170
GGCCTGTTTGGTTGGCAACCTGAGTGATGTGCCTAAGAAAACTACATGCCTAAGAGGCATTAGCTATCCTGTCAAAACTTGCCTGATGAGGCTAGCCTGAGCAAATGTTGTTTGGTTAGTAGCCTAAGCCTGAGGAAACTAAATTGAGATTAGATGGTTCATAATTACATGGTTAAGGTAGATATTATTTAAATAAAACGGTATCTTATATCCTAATCTATCGCATATAAGCAAATGTTGTATTTTCGGTTCGTTTGCACCAACCAAGATTCAACAATAAAATATTCCAACACCTTTTGCATGCACAGTCGTGGGCCCGTGACAGGACAAGCTTGATTAGCGCGTTTTGTTTTGTGTAACTAGACTGAGCCAGGCGCTCGTTTTTGGTGGCCTGAGCTAGGCTAATGAACCTATCAGGTTTTTCAGGTCAGGCAGAGAATGAAACCATCAGGCTACCAACCAAACGACACAGGATATCCCTCAGGGACATATCAGGCCAGGCTCTTTTGGCTCAGGGCTTCAACCAAACAGCCCC

Variation ID: LJ_Y3551_INS0107170

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-adm: LJ | LJ

Os XI-1B: Y3551 | Y3551

Chr01

3879976

3879976

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3942328

3942862

29