Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0088800 | OGI:12016160 | 2/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:5558497-5560057 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | NamRoo_MH63RS3_INS1244860,02428_MH63RS3_INS1245890,Basmati1_MH63RS3_INS1243220,Y58S_MH63RS3_OTH1204240,Y58S_MH63RS3_INV1204220,Lemont_MH63RS3_TRA1233970,Lemont_MH63RS3_OTH1233980,128077_MH63RS3_INS1233690,127652_MH63RS3_INV1207000,127652_MH63RS3_OTH1207050,S548_MH63RS3_OTH1202640,S548_MH63RS3_INV1202620,R9311_MH63RS3_OTH1203470,R9311_MH63RS3_INV1203450,CN1_MH63RS3_INV1202580,CN1_MH63RS3_OTH1202620,ZH11_MH63RS3_INS1248690,DG_MH63RS3_OTH1202770,DG_MH63RS3_INV1202750,DHX2_MH63RS3_INS1248360,127518_MH63RS3_OTH1204290,127518_MH63RS3_INV1204270,KY131_MH63RS3_TRA1243170,KY131_MH63RS3_OTH1243180,IR64_MH63RS3_OTH1203640,IR64_MH63RS3_INV1203620,HZ_MH63RS3_OTH1203090,HZ_MH63RS3_INV1203070,125619_MH63RS3_INV1207020,125619_MH63RS3_OTH1207060,Tumba_MH63RS3_INV1203200,Tumba_MH63RS3_OTH1203240,Kosh_MH63RS3_TRA1245310,Kosh_MH63RS3_OTH1245320,132424_MH63RS3_OTH1203410,132424_MH63RS3_INV1203390,WSSM_MH63RS3_INV1202690,WSSM_MH63RS3_OTH1202740,R527_MH63RS3_OTH1202940,R527_MH63RS3_INV1202920,G8_MH63RS3_INV1203630,G8_MH63RS3_OTH1203670,TM_MH63RS3_OTH1205370,TM_MH63RS3_INV1205350,127564_MH63RS3_INS1229800,117534_MH63RS3_INS1243750,J4155S_MH63RS3_OTH1203760,J4155S_MH63RS3_INV1203740,132278_MH63RS3_INS1245330,II32_MH63RS3_OTH1203160,II32_MH63RS3_INV1203140,G46_MH63RS3_OTH1202400,G46_MH63RS3_INV1202380,FS32_MH63RS3_OTH1203130,FS32_MH63RS3_INV1203110,J4155_MH63RS3_OTH1204320,J4155_MH63RS3_INV1204300,117425_MH63RS3_TRA1240400,117425_MH63RS3_OTH1240410,YX1_MH63RS3_OTH1205050,YX1_MH63RS3_INV1205030,Azucena_MH63RS3_INS1237680,G630_MH63RS3_OTH1203220,G630_MH63RS3_INV1203200,D62_MH63RS3_OTH1203520,D62_MH63RS3_INV1203500,127742_MH63RS3_OTH1203340,127742_MH63RS3_INV1203320,125827_MH63RS3_OTH1203780,125827_MH63RS3_INV1203760,LJ_MH63RS3_TRA1248050,LJ_MH63RS3_OTH1248060,
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| DNA seq | TTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACAGTTACCTAATTAATTGACCCATATATAAATGGTTTCCTGGGTCGGCCAATTTGCACCCTCTATGGGCAACCATCGCAGGGCGGAACCTCTGGAGGTGGAGGTCCGTTAAACCGTAGTTGTAGCAAAACCCTCGTGGCGGAAGCCATCGTGGGCGCCTCATGCAACGCCGCCATGACGAACAACGTGAGGAGGAGGAGAAGCACCACACGCCGGAGCGCCGTCACCGCTGCCGCCAT
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| CDS seq | MAAAVTALRRVVLLLLLTLFVMAALHEAPTMASATRVLLQLRFNGPPPPEGRLCRNF |
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| Protein seq | MAAAVTALRRVVLLLLLTLFVMAALHEAPTMASATRVLLQLRFNGPPPPEGRLCRNF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0088800 | OsMH63_12T0088800.1 | Chr12 | 5558497 | 5560057 | - | maker | ||
| CDS seq | ATGGCGGCAGCGGTGACGGCGCTCCGGCGTGTGGTGCTTCTCCTCCTCCTCACGTTGTTCGTCATGGCGGCGTTGCATGAGGCGCCCACGATGGCTTCCGCCACGAGGGTTTTGCTACAACTACGGTTTAACGGACCTCCACCTCCAGAGGGGAGACTCTGCCGAAATTTCTAA |
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| Protein seq | MAAAVTALRRVVLLLLLTLFVMAALHEAPTMASATRVLLQLRFNGPPPPEGRLCRNF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0218100 | SBH | 0.813813 | 0.820767 | 37.242111 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11620 | SBH | 1.306868 | 1.046183 | 12.662486 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0218100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0094600 | RBH | 0.205051 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0076500 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0076800 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226675200.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
