Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZH11_MH63RS3_INS1248690

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-temp: ZH11 | ZH11

Os XI-adm: Minghui 63 | MH63RS3

Chr12

25251334

25253516

SV Length:

Query Start:

Query End:

Allele sv Count:

1400 bp

5558422

5559821

40

Gene_id	Chromosome	Start	End
OsMH63_12G0088800	Chr12	5558496	5560057

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZH11_117425_INS1240140	Chr12	25251334	25253516	5738198	5740376	2179
ZH11_125619_INS1255710	Chr12	25251334	25253516	5667964	5670140	2177
ZH11_125827_INS1255070	Chr12	25251334	25253516	5610858	5613040	2183
ZH11_127518_INS1251660	Chr12	25251334	25253516	5749133	5751313	2181
ZH11_127564_INS1252450	Chr12	25251334	25253516	5683749	5685929	2181
ZH11_127652_INS1251670	Chr12	25251334	25253434	5710019	5712117	2099
ZH11_127742_INS1253290	Chr12	25251334	25253516	5642314	5644494	2181
ZH11_127742_INS1253290_1	Chr12	25251334	25253516	11513223	11515403	2181
ZH11_132424_INS1250430	Chr12	25251334	25253516	5605229	5607409	2181
ZH11_Basmati1_INS1243190	Chr12	25251334	25253516	5734197	5736375	2179
ZH11_D62_INS1251290	Chr12	25251334	25253516	5710260	5712440	2181
ZH11_FH838_INS1248020	Chr12	25251334	25253516	5554857	5556256	1400
ZH11_FS32_INS1252150	Chr12	25251334	25253516	5635430	5637610	2181
ZH11_G630_INS1247980	Chr12	25251334	25253516	5645805	5647985	2181
ZH11_G8_INS1251620	Chr12	25251334	25253505	5624440	5626607	2168
ZH11_HZ_INS1250410	Chr12	25251334	25253516	5628043	5630223	2181
ZH11_II32_INS1253390	Chr12	25251334	25253516	5631486	5633666	2181
ZH11_II32_INS1253390_1	Chr12	25251334	25253516	11495855	11498036	2182
ZH11_IR64_INS1252600	Chr12	25251334	25253516	5603510	5605690	2181
ZH11_J4155_INS1251420	Chr12	25251334	25253516	5774513	5776693	2181
ZH11_J4155S_INS1251430	Chr12	25251334	25253516	5775369	5777549	2181
ZH11_LK638S_INS1253030	Chr12	25251334	25253516	5607717	5609116	1400
ZH11_Nipponbare_INS1210400	Chr12	25251334	25253516	6119847	6121246	1400
ZH11_R498_INS1252030	Chr12	25251334	25253516	5569816	5571215	1400
ZH11_R498_INS1252030_1	Chr12	25251334	25253516	11145430	11147610	2181
ZH11_R527_INS1249890	Chr12	25251334	25253516	5576532	5578712	2181
ZH11_R9311_INS1253970	Chr12	25251334	25253516	5732494	5734674	2181
ZH11_R9311_INS1253970_1	Chr12	25251334	25253516	11601324	11603504	2181
ZH11_S548_INS1249590	Chr12	25251334	25253516	5575918	5578098	2181
ZH11_TM_INS1249930	Chr12	25251334	25253516	5605018	5607198	2181
ZH11_Tumba_INS1253110	Chr12	25251334	25253516	5594870	5597047	2178
ZH11_Tumba_INS1253110_1	Chr12	25251334	25253516	11921050	11923230	2181
ZH11_WSSM_INS1250340	Chr12	25251334	25253434	5587732	5589830	2099
ZH11_XL628S_INS1254120	Chr12	25251334	25253516	5599773	5601172	1400
ZH11_Y3551_INS1248120	Chr12	25251334	25253516	5555180	5556579	1400
ZH11_Y58S_INS1247310	Chr12	25251334	25253516	5769961	5772141	2181
ZH11_YX1_INS1257450	Chr12	25251334	25253516	6266356	6268536	2181
ZH11_YX1_INS1257450_1	Chr12	25251334	25253516	12087793	12089973	2181
ZH11_ZS97RS3_INS1252600	Chr12	25251334	25253516	5577089	5578488	1400
ZH11_MH63RS3_INS1248690	Chr12	25251334	25253516	5558422	5559821	1400

>ZH11_MH63RS3_INS1248690
CTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACA