Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132278_MH63RS3_INS1245330

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-subtrp: CHAO MEO | Os132278RS1

Os XI-adm: Minghui 63 | MH63RS3

Chr12

25067590

25069772

SV Length:

Query Start:

Query End:

Allele sv Count:

1400 bp

5558422

5559821

36

Gene_id	Chromosome	Start	End
OsMH63_12G0088800	Chr12	5558496	5560057

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132278_117425_INS1236930	Chr12	25067590	25069772	5738198	5740376	2179
132278_125827_INS1251890	Chr12	25067590	25069772	5610858	5613040	2183
132278_127518_INS1247900	Chr12	25067590	25069772	5749133	5751313	2181
132278_127564_INS1250650	Chr12	25067590	25069772	5683749	5685929	2181
132278_127652_INS1246240	Chr12	25067590	25069690	5710019	5712117	2099
132278_127742_INS1252120	Chr12	25067590	25069772	5642314	5644494	2181
132278_127742_INS1252120_1	Chr12	25067590	25069772	11513223	11515403	2181
132278_132424_INS1250120	Chr12	25067590	25069772	5605229	5607409	2181
132278_D62_INS1248190	Chr12	25067590	25069772	5710260	5712440	2181
132278_FH838_INS1244310	Chr12	25067590	25069772	5554857	5556256	1400
132278_FS32_INS1249920	Chr12	25067590	25069772	5635430	5637610	2181
132278_G630_INS1244640	Chr12	25067590	25069772	5645805	5647985	2181
132278_HZ_INS1249980	Chr12	25067590	25069772	5628043	5630223	2181
132278_II32_INS1251970	Chr12	25067590	25069772	5631486	5633666	2181
132278_II32_INS1251970_1	Chr12	25067590	25069772	11495855	11498036	2182
132278_IR64_INS1251610	Chr12	25067590	25069772	5603510	5605690	2181
132278_J4155_INS1246360	Chr12	25067590	25069772	5774513	5776693	2181
132278_J4155S_INS1246610	Chr12	25067590	25069772	5775369	5777549	2181
132278_LK638S_INS1250230	Chr12	25067590	25069772	5607717	5609116	1400
132278_Nipponbare_INS1233400	Chr12	25067590	25069772	6119847	6121246	1400
132278_R498_INS1250810	Chr12	25067590	25069772	5569816	5571215	1400
132278_R498_INS1250810_1	Chr12	25067590	25069772	11145430	11147610	2181
132278_R527_INS1249650	Chr12	25067590	25069772	5576532	5578712	2181
132278_R9311_INS1252970	Chr12	25067590	25069772	5732494	5734674	2181
132278_R9311_INS1252970_1	Chr12	25067590	25069772	11601324	11603504	2181
132278_S548_INS1248780	Chr12	25067590	25069772	5575918	5578098	2181
132278_TM_INS1248760	Chr12	25067590	25069772	5605018	5607198	2181
132278_Tumba_INS1251710	Chr12	25067590	25069772	11921050	11923230	2181
132278_WSSM_INS1248210	Chr12	25067590	25069690	5587732	5589830	2099
132278_XL628S_INS1251220	Chr12	25067590	25069772	5599773	5601172	1400
132278_Y3551_INS1244560	Chr12	25067590	25069772	5555180	5556579	1400
132278_Y58S_INS1242240	Chr12	25067590	25069772	5769961	5772141	2181
132278_YX1_INS1256340	Chr12	25067590	25069772	6266356	6268536	2181
132278_YX1_INS1256340_1	Chr12	25067590	25069772	12087793	12089973	2181
132278_ZS97RS3_INS1249380	Chr12	25067590	25069772	5577089	5578488	1400
132278_MH63RS3_INS1245330	Chr12	25067590	25069772	5558422	5559821	1400

>132278_MH63RS3_INS1245330
CTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACA