Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 02428_MH63RS3_INS1245890

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-temp: 02428 | 02428

Os XI-adm: Minghui 63 | MH63RS3

Chr12

24324808

24326990

SV Length:

Query Start:

Query End:

Allele sv Count:

1400 bp

5558422

5559821

40

Gene_id	Chromosome	Start	End
OsMH63_12G0088800	Chr12	5558496	5560057

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
02428_117425_INS1235940	Chr12	24324808	24326990	5738198	5740376	2179
02428_125619_INS1250650	Chr12	24324808	24326990	5667964	5670140	2177
02428_125827_INS1251110	Chr12	24324808	24326990	5610858	5613040	2183
02428_127518_INS1250310	Chr12	24324808	24326990	5749133	5751313	2181
02428_127564_INS1249640	Chr12	24324808	24326990	5683749	5685929	2181
02428_127652_INS1250400	Chr12	24324808	24326908	5710019	5712117	2099
02428_127742_INS1250320	Chr12	24324808	24326990	5642314	5644494	2181
02428_127742_INS1250320_1	Chr12	24324808	24326990	11513223	11515403	2181
02428_132424_INS1248380	Chr12	24324808	24326990	5605229	5607409	2181
02428_Basmati1_INS1238670	Chr12	24324808	24326990	5734197	5736375	2179
02428_D62_INS1250450	Chr12	24324808	24326990	5710260	5712440	2181
02428_FH838_INS1245330	Chr12	24324808	24326990	5554857	5556256	1400
02428_FS32_INS1247740	Chr12	24324808	24326990	5635430	5637610	2181
02428_G630_INS1245820	Chr12	24324808	24326990	5645805	5647985	2181
02428_G8_INS1249380	Chr12	24324808	24326979	5624440	5626607	2168
02428_HZ_INS1247990	Chr12	24324808	24326990	5628043	5630223	2181
02428_II32_INS1250380	Chr12	24324808	24326990	5631486	5633666	2181
02428_II32_INS1250380_1	Chr12	24324808	24326990	11495855	11498036	2182
02428_IR64_INS1250400	Chr12	24324808	24326990	5603510	5605690	2181
02428_J4155_INS1248610	Chr12	24324808	24326990	5774513	5776693	2181
02428_J4155S_INS1249150	Chr12	24324808	24326990	5775369	5777549	2181
02428_LK638S_INS1251920	Chr12	24324808	24326990	5607717	5609116	1400
02428_Nipponbare_INS1207630	Chr12	24324808	24326990	6119847	6121246	1400
02428_R498_INS1249590	Chr12	24324808	24326990	5569816	5571215	1400
02428_R498_INS1249590_1	Chr12	24324808	24326990	11145430	11147610	2181
02428_R527_INS1247740	Chr12	24324808	24326990	5576532	5578712	2181
02428_R9311_INS1251390	Chr12	24324808	24326990	5732494	5734674	2181
02428_R9311_INS1251390_1	Chr12	24324808	24326990	11601324	11603504	2181
02428_S548_INS1247350	Chr12	24324808	24326990	5575918	5578098	2181
02428_TM_INS1248060	Chr12	24324808	24326990	5605018	5607198	2181
02428_Tumba_INS1251280	Chr12	24324808	24326990	5594870	5597047	2178
02428_Tumba_INS1251280_1	Chr12	24324808	24326990	11921050	11923230	2181
02428_WSSM_INS1247630	Chr12	24324808	24326908	5587732	5589830	2099
02428_XL628S_INS1252560	Chr12	24324808	24326990	5599773	5601172	1400
02428_Y3551_INS1245330	Chr12	24324808	24326990	5555180	5556579	1400
02428_Y58S_INS1245080	Chr12	24324808	24326990	5769961	5772141	2181
02428_YX1_INS1254160	Chr12	24324808	24326990	6266356	6268536	2181
02428_YX1_INS1254160_1	Chr12	24324808	24326990	12087793	12089973	2181
02428_ZS97RS3_INS1250840	Chr12	24324808	24326990	5577089	5578488	1400
02428_MH63RS3_INS1245890	Chr12	24324808	24326990	5558422	5559821	1400

>02428_MH63RS3_INS1245890
CTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACA