Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Basmati1_MH63RS3_INS1243220

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os cB: Basmati1 | Basmati1

Os XI-adm: Minghui 63 | MH63RS3

Chr12

24770192

24772375

SV Length:

Query Start:

Query End:

Allele sv Count:

1400 bp

5558422

5559821

13

Gene_id	Chromosome	Start	End
OsMH63_12G0088800	Chr12	5558496	5560057

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Basmati1_127742_INS1249240	Chr12	24770192	24772375	11513223	11515403	2181
Basmati1_FH838_INS1242780	Chr12	24770192	24772375	5554857	5556256	1400
Basmati1_II32_INS1246960	Chr12	24770192	24772375	11495855	11498036	2182
Basmati1_Nipponbare_INS1244830	Chr12	24770192	24772375	6119847	6121246	1400
Basmati1_R498_INS1246210	Chr12	24770192	24772375	5569816	5571215	1400
Basmati1_R498_INS1246210_1	Chr12	24770192	24772375	11145430	11147610	2181
Basmati1_R9311_INS1249800	Chr12	24770192	24772375	11601324	11603504	2181
Basmati1_Tumba_INS1246480	Chr12	24770192	24772375	11921050	11923230	2181
Basmati1_XL628S_INS1246710	Chr12	24770192	24772375	5599773	5601172	1400
Basmati1_Y3551_INS1242670	Chr12	24770192	24772375	5555180	5556579	1400
Basmati1_YX1_INS1249560	Chr12	24770192	24772375	12087793	12089973	2181
Basmati1_ZS97RS3_INS1245660	Chr12	24770192	24772375	5577089	5578488	1400
Basmati1_MH63RS3_INS1243220	Chr12	24770192	24772375	5558422	5559821	1400

>Basmati1_MH63RS3_INS1243220
CTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACA