Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0338100 | OGI:01059280 | 48/50 | Minghui 63 | MH63RS3 | HZAU | Chr01:21503385-21504446 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ATGGATCCACCAACATTCTTCACGATCTGGATGACCGCGGCAAATCAGCACTGTGCGGTAAAATCTAAGACAAAACTATCCTATTCAATATATAAAGTATCCTATATACAACAATGTTAATGTATGTTCTTTATTGGCCAGTGTATTCCACCCGCAATTGTGCAAGCATATGAACTCAAGGACGGTCAAAAAAGTTGGTGACAGCACATCACCTTAAGGTCTACATTGAACTGAGGAAAGCATCTAACAACATGTACATGACAGCAGGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGTAAATGAACCGTATCTTACAGCTCATCTCCTGGCAAAACAAAAAAAAAAAAAAACATCCTGCTGTATACTGCCATATCTGCATCCATTAGCCTATCAACTTTATTACCTACTCTTGTCAATTTCTTTTTTTTTAAAACATTATTTCACTTGCAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGTACACATGGTTCACTTGATATTCTCAATATATTCATCACCATCTCTTTTCACCTACACTGCTATGTTCATTCACATCCCTTGTAACAGGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGGTAAAATCACTAGCTCATTCCTCTTTTCTGCACTATACACTTAAAAACTAATGTTCTGTTTTTATCCAGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGA
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| CDS seq | MDPPTFFTIWMTAANQHCACIPPAIVQAYELKDGQKRWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASTHGNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR |
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| Protein seq | MDPPTFFTIWMTAANQHCACIPPAIVQAYELKDGQKRWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASTHGNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR |
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| Function | Putative B3 domain-containing protein LOC_Os07g12820 [UniProtKB/Swiss-Prot:Q84YL3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0338100 | OsMH63_01T0338100.1 | Chr01 | 21503385 | 21504446 | + | maker | ||
| CDS seq | ATGGATCCACCAACATTCTTCACGATCTGGATGACCGCGGCAAATCAGCACTGTGCGTGTATTCCACCCGCAATTGTGCAAGCATATGAACTCAAGGACGGTCAAAAAAGATGGGCCCAGTTTATAGAAGCAACTGGTCTGCAGGTTCAAGAGCCCGCCGTTTTCAGGGTTTTATCAACCTCGAAGATGCATTTCATCATATTTGCAAAGGACGGTTATCTTAGATGCCCAGTTCCAGACAAACCCAGAGACTCTGAACCGACCAGACAATCGTTTCGCACATCAAGCCCACAAGGGAAAGCCACTACAATTACTTCGCCTATCCAATGCTGCATCAAAGGGAAGCTAAAACATGATGGCACATCCACTTCTGCAAGTACACATGGCAACAACAGGCGCACTATCAGCGAAATGTGTTTCTGCACCAAGGACATCAGGTTATCAGCTGAAGTCAAGAACTACATCAAAGATATTGCGCCATTCCTCCAGCCCTCAGACAAATTTTATGTGACTGCCATAAATGCAACATTCATGAAGGAAGGGAGAGTGTACTTAGTAAAGGAATTTTCAAAGAAGTACATTGCACCGCTTGCACGATGA
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| Protein seq | MDPPTFFTIWMTAANQHCACIPPAIVQAYELKDGQKRWAQFIEATGLQVQEPAVFRVLSTSKMHFIIFAKDGYLRCPVPDKPRDSEPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASTHGNNRRTISEMCFCTKDIRLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPLAR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.9005695 | 44.381212 | 35.4173785 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0541000 | RBH | 4.642141 | 2.897840 | 3.125316 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g35930 | RBH | 1.183195 | 0.998598 | 0.932590 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0541000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020530 | RBH | 1.835649 | 4.583171 | 18.625303 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020140 | RBH | 1.600250 | 9.037033 | 17.338793 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020470 | RBH | 1.836420 | 1.150985 | 22.459005 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019850 | RBH | 0.441194 | 0.520115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019750 | RBH | 12.548853 | 33.266109 | 52.790546 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019760 | RBH | 0.810785 | 1.389047 | 2.015940 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019660 | RBH | 0.601680 | 12.470798 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_01g0235300 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_01g0242100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0100750900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0102712900.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0102470300.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0100747900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100457900.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0100745300.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0100730700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0100739900.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0100548500.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0100761300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0100743500.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0100753300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0101216300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0101435700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | TMG0100756900.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0100744700.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0100746100.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0100769700.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0100742100.01 | RBH | None | None | None |
