Protein CHROMATIN REMODELING 4 [UniProtKB/Swiss-Prot: F4KBP5]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0046872 (metal ion binding)
GO:0006325 (chromatin organization)
GO:0005634 (nucleus)
GO:0009506 (plasmodesma)

Ethylene-responsive transcription factor ERF025 [UniProtKB/Swiss-Prot: Q9FJ90]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0050832 (defense response to fungus)
GO:0009873 (ethylene-activated signaling pathway)
GO:0019760 (glucosinolate metabolic process)
GO:0005634 (nucleus)

DNA polymerase delta small subunit [UniProtKB/Swiss-Prot: Q9LRE5]

GO:0003677 (DNA binding)
GO:0003887 (DNA-directed DNA polymerase activity)
GO:0006271 (DNA strand elongation involved in DNA replication)
GO:0043625 (delta DNA polymerase complex)
GO:0042575 (DNA polymerase complex)

Transcription factor bHLH93 [UniProtKB/Swiss-Prot: Q9LSL1]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0045487 (gibberellin catabolic process)
GO:0007275 (multicellular organism development)
GO:0010371 (regulation of gibberellin biosynthetic process)
GO:0005634 (nucleus)

Probable histone H2A variant 1 [UniProtKB/Swiss-Prot: Q8H7Y8]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

Protein ROS1A [UniProtKB/Swiss-Prot: C7IW64]

GO:0051539 (4 iron, 4 sulfur cluster binding)
GO:0003677 (DNA binding)
GO:0035514 (DNA demethylase activity)
GO:0016787 (hydrolase activity)
GO:0046872 (metal ion binding)
GO:0006284 (base-excision repair)
GO:0080111 (DNA demethylation)
GO:0048229 (gametophyte development)
GO:0005634 (nucleus)

DNA-directed RNA polymerase subunit beta [UniProtKB/Swiss-Prot: P0C503]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0032549 (ribonucleoside binding)
GO:0006351 (transcription, DNA-templated)
GO:0009507 (chloroplast)
GO:0009536 (plastid)

Factor of DNA methylation 1 [UniProtKB/Swiss-Prot: Q9S9P3]

GO:0003677 (DNA binding)
GO:0003725 (double-stranded RNA binding)
GO:0043621 (protein self-association)
GO:0003723 (RNA binding)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0010569 (regulation of double-strand break repair via homologous recombination)
GO:0009506 (plasmodesma)

Trihelix transcription factor DF1 [UniProtKB/Swiss-Prot: Q9C6K3]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0019760 (glucosinolate metabolic process)
GO:0010192 (mucilage biosynthetic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Tetratricopeptide repeat protein SKI3 [UniProtKB/Swiss-Prot: F4I3Z5]

GO:0003677 (DNA binding)
GO:0070478 (nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)
GO:1904278 (positive regulation of wax biosynthetic process)
GO:0016441 (posttranscriptional gene silencing)
GO:0005737 (cytoplasm)
GO:0055087 (Ski complex)

Protein CHROMATIN REMODELING 24 [UniProtKB/Swiss-Prot: Q8W103]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0015616 (DNA translocase activity)
GO:0004386 (helicase activity)
GO:0006310 (DNA recombination)
GO:0045951 (positive regulation of mitotic recombination)
GO:0046686 (response to cadmium ion)
GO:0005634 (nucleus)

DNA-directed RNA polymerase II subunit RPB1 [UniProtKB/Swiss-Prot: P18616]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046872 (metal ion binding)
GO:0006366 (transcription by RNA polymerase II)
GO:0009506 (plasmodesma)
GO:0005665 (RNA polymerase II, core complex)
GO:0005773 (vacuole)

Probable histone H2A variant 2 [UniProtKB/Swiss-Prot: Q8S857]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

Two-component response regulator EHD1 [UniProtKB/Swiss-Prot: Q7Y0W3]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009908 (flower development)
GO:0000160 (phosphorelay signal transduction system)
GO:0048576 (positive regulation of short-day photoperiodism, flowering)
GO:0005634 (nucleus)

ATP-dependent DNA helicase pif1 [UniProtKB/Swiss-Prot: A5WFR0]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0003678 (DNA helicase activity)
GO:0006310 (DNA recombination)
GO:0006281 (DNA repair)
GO:0000723 (telomere maintenance)

DNA-directed RNA polymerase II subunit RPB1 [UniProtKB/Swiss-Prot: P18616]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046872 (metal ion binding)
GO:0006366 (transcription by RNA polymerase II)
GO:0009506 (plasmodesma)
GO:0005665 (RNA polymerase II, core complex)
GO:0005773 (vacuole)

Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 [UniProtKB/Swiss-Prot: Q10CH5]

GO:0003677 (DNA binding)
GO:0046983 (protein dimerization activity)
GO:0080006 (internode patterning)
GO:0090229 (negative regulation of red or far-red light signaling pathway)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Replication factor C subunit 2 [UniProtKB/Swiss-Prot: Q9FXM3]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006281 (DNA repair)
GO:0006261 (DNA-dependent DNA replication)
GO:0005663 (DNA replication factor C complex)
GO:0005730 (nucleolus)
GO:0005634 (nucleus)

DNA polymerase alpha subunit B [UniProtKB/Swiss-Prot: Q14181]

GO:0003677 (DNA binding)
GO:0006260 (DNA replication)
GO:0006270 (DNA replication initiation)
GO:0000082 (G1/S transition of mitotic cell cycle)
GO:0032201 (telomere maintenance via semi-conservative replication)
GO:0005658 (alpha DNA polymerase:primase complex)
GO:0005829 (cytosol)
GO:0005654 (nucleoplasm)

Probable histone H2A.7 [UniProtKB/Swiss-Prot: Q2QS71]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

Factor of DNA methylation 1 [UniProtKB/Swiss-Prot: Q9S9P3]

GO:0003677 (DNA binding)
GO:0003725 (double-stranded RNA binding)
GO:0043621 (protein self-association)
GO:0003723 (RNA binding)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0010569 (regulation of double-strand break repair via homologous recombination)
GO:0009506 (plasmodesma)

Protein MHF2 homolog [UniProtKB/Swiss-Prot: Q8L7N3]

GO:0003677 (DNA binding)
GO:0006281 (DNA repair)
GO:0051382 (kinetochore assembly)
GO:0031297 (replication fork processing)
GO:0000712 (resolution of meiotic recombination intermediates)
GO:0007129 (homologous chromosome pairing at meiosis)
GO:0071821 (FANCM-MHF complex)
GO:0043240 (Fanconi anaemia nuclear complex)

Protein G1-like4 [UniProtKB/Swiss-Prot: Q7XRS1]

GO:0003677 (DNA binding)
GO:0009299 (mRNA transcription)
GO:0007275 (multicellular organism development)
GO:0090698 (post-embryonic plant morphogenesis)
GO:0009416 (response to light stimulus)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor 5 [UniProtKB/Swiss-Prot: O80341]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0010200 (response to chitin)
GO:0009409 (response to cold)
GO:0005634 (nucleus)

H/ACA ribonucleoprotein complex subunit CBF5 [UniProtKB/Swiss-Prot: G0SGK0]

GO:0003677 (DNA binding)
GO:0009982 (pseudouridine synthase activity)
GO:0003723 (RNA binding)
GO:0007049 (cell cycle)
GO:0051301 (cell division)
GO:0001522 (pseudouridine synthesis)
GO:0006364 (rRNA processing)
GO:0005874 (microtubule)
GO:0005730 (nucleolus)

Probable histone H2AXa [UniProtKB/Swiss-Prot: Q8LLP5]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

Transcription factor bHLH113 [UniProtKB/Swiss-Prot: Q9LT67]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Protein DEK [UniProtKB/Swiss-Prot: Q7TNV0]

GO:0003677 (DNA binding)
GO:0042393 (histone binding)
GO:0006325 (chromatin organization)
GO:2000779 (regulation of double-strand break repair)
GO:2001032 (regulation of double-strand break repair via nonhomologous end joining)
GO:0043292 (contractile fiber)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

Protein ALWAYS EARLY 3 [UniProtKB/Swiss-Prot: Q6A332]

GO:0003677 (DNA binding)
GO:0051726 (regulation of cell cycle)
GO:0006357 (regulation of transcription by RNA polymerase II)
GO:0000003 (reproduction)
GO:0006351 (transcription, DNA-templated)
GO:0005654 (nucleoplasm)
GO:0017053 (transcription repressor complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

Transcription factor TFIIIB component B'' [UniProtKB/Swiss-Prot: O94481]

GO:0003677 (DNA binding)
GO:0000995 (RNA polymerase III general transcription initiation factor activity)
GO:0001156 (TFIIIC-class transcription factor complex binding)
GO:0070898 (RNA polymerase III preinitiation complex assembly)
GO:0006383 (transcription by RNA polymerase III)
GO:0005634 (nucleus)
GO:0000126 (transcription factor TFIIIB complex)

ETHYLENE INSENSITIVE 3-like 3 protein [UniProtKB/Swiss-Prot: O23116]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0042762 (regulation of sulfur metabolic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

High mobility group B protein 9 [UniProtKB/Swiss-Prot: Q9SGS2]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0000741 (karyogamy)
GO:0010197 (polar nucleus fusion)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

DNA polymerase epsilon subunit B [UniProtKB/Swiss-Prot: Q500V9]

GO:0003677 (DNA binding)
GO:0070182 (DNA polymerase binding)
GO:0007049 (cell cycle)
GO:0006261 (DNA-dependent DNA replication)
GO:0009793 (embryo development ending in seed dormancy)
GO:0042276 (error-prone translesion synthesis)
GO:0051781 (positive regulation of cell division)
GO:0008622 (epsilon DNA polymerase complex)

Dof zinc finger protein MNB1A [UniProtKB/Swiss-Prot: P38564]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0000976 (transcription regulatory region sequence-specific DNA binding)
GO:0008270 (zinc ion binding)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

NAC domain-containing protein 78 [UniProtKB/Swiss-Prot: Q84K00]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0009962 (regulation of flavonoid biosynthetic process)
GO:0009644 (response to high light intensity)
GO:0005737 (cytoplasm)
GO:0016021 (integral component of membrane)
GO:0005634 (nucleus)

Transcription factor ILR3 [UniProtKB/Swiss-Prot: Q9FH37]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0019760 (glucosinolate metabolic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Exonuclease 1 [UniProtKB/Swiss-Prot: Q60GC1]

GO:0035312 (5'-3' exodeoxyribonuclease activity)
GO:0017108 (5'-flap endonuclease activity)
GO:0003677 (DNA binding)
GO:0048256 (flap endonuclease activity)
GO:0046872 (metal ion binding)
GO:0006281 (DNA repair)
GO:0005634 (nucleus)

Helicase-like transcription factor CHR28 [UniProtKB/Swiss-Prot: Q94BR5]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0046872 (metal ion binding)
GO:0006325 (chromatin organization)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor ERF114 [UniProtKB/Swiss-Prot: Q9FH54]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0050832 (defense response to fungus)
GO:0009873 (ethylene-activated signaling pathway)
GO:0007275 (multicellular organism development)
GO:0005634 (nucleus)

Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 [UniProtKB/Swiss-Prot: Q10CH5]

GO:0003677 (DNA binding)
GO:0046983 (protein dimerization activity)
GO:0080006 (internode patterning)
GO:0090229 (negative regulation of red or far-red light signaling pathway)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Endoribonuclease Dicer homolog 3a [UniProtKB/Swiss-Prot: Q5N870]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0046872 (metal ion binding)
GO:0004525 (ribonuclease III activity)
GO:0003723 (RNA binding)
GO:0031047 (gene silencing by RNA)
GO:0006396 (RNA processing)
GO:0005634 (nucleus)

Septin and tuftelin-interacting protein 1 homolog 1 [UniProtKB/Swiss-Prot: Q9SHG6]

GO:0003677 (DNA binding)
GO:1990446 (U1 snRNP binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0042752 (regulation of circadian rhythm)
GO:0000390 (spliceosomal complex disassembly)
GO:0031981 (nuclear lumen)
GO:0071008 (U2-type post-mRNA release spliceosomal complex)

Splicing factor U2af small subunit B [UniProtKB/Swiss-Prot: Q6AUG0]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0030628 (pre-mRNA 3'-splice site binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0005681 (spliceosomal complex)
GO:0089701 (U2AF complex)

Protein BRASSINAZOLE-RESISTANT 2 [UniProtKB/Swiss-Prot: Q9LN63]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009742 (brassinosteroid mediated signaling pathway)
GO:0071367 (cellular response to brassinosteroid stimulus)
GO:1904961 (quiescent center organization)
GO:0006351 (transcription, DNA-templated)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 2 [UniProtKB/Swiss-Prot: Q9FU27]

GO:0003677 (DNA binding)
GO:0008270 (zinc ion binding)
GO:0009867 (jasmonic acid mediated signaling pathway)
GO:0010150 (leaf senescence)
GO:0005634 (nucleus)

Putative transcription factor bHLH041 [UniProtKB/Swiss-Prot: Q9LTS4]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

Histone-lysine N-methyltransferase ATX3 [UniProtKB/Swiss-Prot: Q9M364]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0008168 (methyltransferase activity)
GO:0006325 (chromatin organization)
GO:0032259 (methylation)
GO:0051571 (positive regulation of histone H3-K4 methylation)
GO:0005634 (nucleus)