Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0223600 | OGI:03035980 | 14/16 | Minghui 63 | MH63RS3 | HZAU | Chr03:14092964-14095002 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAATTTATCAGGACGTGACAAATCCACCCCCCTTACAGGAATCTCGTCCCCGAGATTCGAGGAGGCTAGCAAGAAGATAGGTTGGGCGGTCTTCTCTTCTTGTCTGACTTCTTCCGTCGCGTCTTCTATAACGAACTTGCCTAGCAAAACTTCTCCACTCTGGACTGCTTGGCTCGATCTCCTGTTATTGATGGAATCTTCTCTTCACCTGACTTTTCCCTGGTTGCACCTCTAGCTGACTTCGACTGGGCTGCGGCATTGGAAGATGGGGCTTCAGTTCCAGAACTTCTTATAACTCATATCTTTGGAGTCAACCGCATACAAGTTACCACTTCATGTCATGCGTCAACACTAGCTGGTCATTACTAGGATACCATGTTTGTCATCATAAGAATATCATGCTTGTCATTTACTTCTAACTTGCCACAAACTGCCTCATATTAGCTTTCCTGCTCTCCGGGTGCTAGCTACTTCTGCTATTCCATGCGAGGGTCGATATCTTTGCCTTTGAATTATGTTTCTCAACCGAACCAACTTATCCCACTTGACATGCTTTGACGTCTTCCCAAATGGCTTTACTGCTGGACTTCTTATTGTTTGATCGTTATCCTGCCAAATCTGAAGCTTCGTTGTTAGGTGTGATTTTAATCTGACCTCTATAGACTATCTTCGAACATATCACTTGGTTCATAACTGGGAATAGCTCCCACGAACAGACAACTCGGATTCACCTTCTTTTCATTCGGTTTACTTCCCACTATTCTCTCCATGTTGTCCTCAGTTAGCATTCAACGTATTCCTTTACACCTTTGACCTTGATGTGTTCTTTCCCGACTTCTCTTATCAATCACCTTTCGACCTACTTCTTTGCCTGGTAATAAACACCTTTTTCGATATCTTCTATCAGTCATCTTTTGACCTTTGTCAACTAAGTACTCTTCACTCCGAGAGTTGTGGATGCTTTTGGTGACGATGTGGTCCTTTGGTCTGCTGCCTTTCAGTGAAACCTTGAAGTGTTTCGCCAAAAGCTGTACTGACTGTCTTTGCCTTTGATCCGAAAAAGACACATCTGAAACTCTTAGTCCAAACAAATGTCTCTTTGGTTAATCGCTTGATTTTCTTTTCCATCATCAGGTTGGTTATTAACTCGAGGTTAGAACATAGTTCCTCTGAAATGAGACCCTAGGTCTCTTTTGACTGTAAACAATTATACACATAATCCCATATCAGCATCTTCGTGTATATATTTTACAAAAACGCGAAATCAAAGTTGGGGATAAAGTAGCCGGAAGACACGGGAATAAGGGGATCATTTCCAAAATTTTGCCTAGGCAAGATATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGGTTTTCAATCCCTTAGGAGTACCCTCCCGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCTCTAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA
More
|
||||||||||
| CDS seq | ATGAATTTATCAGGACGTGACAAATCCACCCCCCTTACAGGAATCTCGTCCCCGAGATTCGAGGAGGCTAGCAAGAAGATAGCTGACTTCGACTGGGCTGCGGCATTGGAAGATGGGGCTTCAGTTCCAGAACTTCTTATAACTCATATCTTTGGAGTCAACCGCATACAAGTTACCACTTCATGTCATGCGTCAACACTAGCTGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCTCTAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA
More
|
||||||||||
| Protein seq | MNLSGRDKSTPLTGISSPRFEEASKKIADFDWAAALEDGASVPELLITHIFGVNRIQVTTSCHASTLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRVPNHEDPLESFRVLVRELRSLALELNHFLVSQKNFQVNREEV |
||||||||||
| Function | DNA-directed RNA polymerase subunit beta [UniProtKB/Swiss-Prot:P0C503] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0223600 | OsMH63_03T0223600.1 | Chr03 | 14092964 | 14095002 | + | maker | ||
| CDS seq | ATGAATTTATCAGGACGTGACAAATCCACCCCCCTTACAGGAATCTCGTCCCCGAGATTCGAGGAGGCTAGCAAGAAGATAGCTGACTTCGACTGGGCTGCGGCATTGGAAGATGGGGCTTCAGTTCCAGAACTTCTTATAACTCATATCTTTGGAGTCAACCGCATACAAGTTACCACTTCATGTCATGCGTCAACACTAGCTGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCTCTAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA
More
|
|||||||
| Protein seq | MNLSGRDKSTPLTGISSPRFEEASKKIADFDWAAALEDGASVPELLITHIFGVNRIQVTTSCHASTLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRVPNHEDPLESFRVLVRELRSLALELNHFLVSQKNFQVNREEV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 46.0343055 | 53.8328765 | 57.149273 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28960 | SBH | 0.494545 | 0.796952 | 0.612457 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016870 | SBH | 0.000000 | 0.983059 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017770 | RBH | 6.429429 | 89.839859 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
