Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0446100 | OGI:11082910 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:33422719-33424724 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCCACCTTACATTTTGCTGGATGCCGAAATGAGACCCAAAATAGCAGATTTTGTTATGACCAAAATTTTTGGTGAAAACCAGCAAAAGGCGAATACTAAAAAATCCGAGGACATGCAGTACAAGAGAAGAATAATCTTAAACTTTCCAACGCTGCGGTTAACAGATTCACAGAAGAAAGCATATGCCTTGATCGAAATAGAGAAACTAATGAGACAAGCAGGAAAATCGCTAAGGGACTACCCAGACATAGAGCTACCAAATGCTGCCGAGATAGAGGAACTTGGTAACAGACTTATAAACGAAGAGCTTAACTATGACAAAGACCAACTGAAGGATGAGCACCTCGCCATATTAAACAGCCTTAACACAGATCAGAAAAAAGCCTTCGATGCGATAATGGAATCTATCAACGGAGGGCAAGGAAAGCAAATATTTGTGGAAGGCTATGGCGGGACAGGGAAAACATACCTATGGAAAGCACTCACGACAAAACTAAGATCCGAGGGGAAGATAGTCCTTGCAGTTGCTTCATGTGGTATTGCAGCACTTCTACTCCAAGGTGGGAGAACGGCACACTCAAGATTTCGCATTCCAATAAAGATCACGGAAGAGTCAACATGCGAAATAAAGCAAGGAACCCATTTGGCCGAACTACTAAAAAGGACATCACTGATACTATGGGATGAGGCTCCGATGGCAAACAAGCATTGCTTTGAAGCATTGGACAAAAGCCTAAGAGATATAATGAGGTTCACTAATGAAAACAGCAGTGAAAGGCCATTTGGCGGCATGACAGTTGTATTGGGCGGGGACTTTAGACAGATCCTTCCGGTGATTCCAAAGGGAAGGAGAGAGAATATAGTGAATGCATCAATCAAACGCTCATACCTCTGGAATCACTTTGAAATTATCAAACTAACAGAAAACATGCGACTAAGCTGCATGTCCAATGAACCGCTAGAGAAGCAAAAGGTCGCTGAATTCGCTAAGTGGATTCTACATATCGGTGACGGAGCATCAGCATCAGATGAAGGAGAGGAATGGGTAAAAATCCCAAGTGATATCCTACTACAAAAAGGACAAGACCCAAAAGAAACAATCGTCAAAAGCATTTATCCAAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGGAAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATGACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGAACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAATGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGGTATACATACAATCATCATGTCACCGAGCGACACCAACTGGCCATTTGTCCTGAAAAGAAGACAATATCCTCTATTAGTTTGCTTCGCAATGACCATAAATAAAAGCCAAGGCCAGTCCCTGAACAAGGTTGGTTTATATCTACCTAAACAAGTCTTCTGCCATGGGGGCCTGTTTGGGGAGCTTTAGATTCCGAGAAGCAGCTGTTTGGTAGCCAGCTTTTGAGAATCTGGAAAAGCTCTGAAACCCAGCTTCTGGCTTCTTAGTTCATTTTTCAGAATCTATAACTGCAGATTCTCAGAAGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAGGGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGAAAATGTCGCTAGAAACATTGTATACAAGGAGATTTTCTAA
More
|
||||||||||
| CDS seq | ATGAGACCCAAAATAGCAGATTTTGTTATGACCAAAATTTTTGGTGAAAACCAGCAAAAGGCGAATACTAAAAAATCCGAGGACATGCAGTACAAGAGAAGAATAATCTTAAACTTTCCAACGCTGCGGTTAACAGATTCACAGAAGAAAGCATATGCCTTGATCGAAATAGAGAAACTAATGAGACAAGCAGGAAAATCGCTAAGGGACTACCCAGACATAGAGCTACCAAATGCTGCCGAGATAGAGGAACTTGGTAACAGACTTATAAACGAAGAGCTTAACTATGACAAAGACCAACTGAAGGATGAGCACCTCGCCATATTAAACAGCCTTAACACAGATCAGAAAAAAGCCTTCGATGCGATAATGGAATCTATCAACGGAGGGCAAGGAAAGCAAATATTTGTGGAAGGCTATGGCGGGACAGGGAAAACATACCTATGGAAAGCACTCACGACAAAACTAAGATCCGAGGGGAAGATAGTCCTTGCAGTTGCTTCATGTGGTATTGCAGCACTTCTACTCCAAGGTGGGAGAACGGCACACTCAAGATTTCGCATTCCAATAAAGATCACGGAAGAGTCAACATGCGAAATAAAGCAAGGAACCCATTTGGCCGAACTACTAAAAAGGACATCACTGATACTATGGGATGAGGCTCCGATGGCAAACAAGCATTGCTTTGAAGCATTGGACAAAAGCCTAAGAGATATAATGAGGTTCACTAATGAAAACAGCAGTGAAAGGCCATTTGGCGGCATGACAGTTGTATTGGGCGGGGACTTTAGACAGATCCTTCCGGTGATTCCAAAGGGAAGGAGAGAGAATATAGTGAATGCATCAATCAAACGCTCATACCTCTGGAATCACTTTGAAATTATCAAACTAACAGAAAACATGCGACTAAGCTGCATGTCCAATGAACCGCTAGAGAAGCAAAAGGTCGCTGAATTCGCTAAGTGGATTCTACATATCGGTGACGGAGCATCAGCATCAGATGAAGGAGAGGAATGGGTAAAAATCCCAAGTGATATCCTACTACAAAAAGGACAAGACCCAAAAGAAACAATCGTCAAAAGCATTTATCCAAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGGAAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATGACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGAACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAATGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGATTCTCAGAAGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAGGGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGAAAATGTCGCTAGAAACATTGTATACAAGGAGATTTTCTAA
More
|
||||||||||
| Protein seq | MRPKIADFVMTKIFGENQQKANTKKSEDMQYKRRIILNFPTLRLTDSQKKAYALIEIEKLMRQAGKSLRDYPDIELPNAAEIEELGNRLINEELNYDKDQLKDEHLAILNSLNTDQKKAFDAIMESINGGQGKQIFVEGYGGTGKTYLWKALTTKLRSEGKIVLAVASCGIAALLLQGGRTAHSRFRIPIKITEESTCEIKQGTHLAELLKRTSLILWDEAPMANKHCFEALDKSLRDIMRFTNENSSERPFGGMTVVLGGDFRQILPVIPKGRRENIVNASIKRSYLWNHFEIIKLTENMRLSCMSNEPLEKQKVAEFAKWILHIGDGASASDEGEEWVKIPSDILLQKGQDPKETIVKSIYPNLLDNYREREFLEERAILCPRNETVQEINEYIMNQIQREEMTYLSCDTVCKAMTNNSSMEHMYPTEFLNTLKFPGIPNHELKLKVGLPVMLLRNINQTAGLCNGTRMTITQLGKKYIEAQIITGTHVDDKILRSCGLFEAASSRSSFWEKLQLGEAPPNRAVAFSRVTNRNGLKVLIDDSDCPEENVARNIVYKEIF |
||||||||||
| Function | ATP-dependent DNA helicase pif1 [UniProtKB/Swiss-Prot:A5WFR0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0446100 | OsMH63_11T0446100.1 | Chr11 | 33422719 | 33424724 | + | maker | ||
| CDS seq | ATGAGACCCAAAATAGCAGATTTTGTTATGACCAAAATTTTTGGTGAAAACCAGCAAAAGGCGAATACTAAAAAATCCGAGGACATGCAGTACAAGAGAAGAATAATCTTAAACTTTCCAACGCTGCGGTTAACAGATTCACAGAAGAAAGCATATGCCTTGATCGAAATAGAGAAACTAATGAGACAAGCAGGAAAATCGCTAAGGGACTACCCAGACATAGAGCTACCAAATGCTGCCGAGATAGAGGAACTTGGTAACAGACTTATAAACGAAGAGCTTAACTATGACAAAGACCAACTGAAGGATGAGCACCTCGCCATATTAAACAGCCTTAACACAGATCAGAAAAAAGCCTTCGATGCGATAATGGAATCTATCAACGGAGGGCAAGGAAAGCAAATATTTGTGGAAGGCTATGGCGGGACAGGGAAAACATACCTATGGAAAGCACTCACGACAAAACTAAGATCCGAGGGGAAGATAGTCCTTGCAGTTGCTTCATGTGGTATTGCAGCACTTCTACTCCAAGGTGGGAGAACGGCACACTCAAGATTTCGCATTCCAATAAAGATCACGGAAGAGTCAACATGCGAAATAAAGCAAGGAACCCATTTGGCCGAACTACTAAAAAGGACATCACTGATACTATGGGATGAGGCTCCGATGGCAAACAAGCATTGCTTTGAAGCATTGGACAAAAGCCTAAGAGATATAATGAGGTTCACTAATGAAAACAGCAGTGAAAGGCCATTTGGCGGCATGACAGTTGTATTGGGCGGGGACTTTAGACAGATCCTTCCGGTGATTCCAAAGGGAAGGAGAGAGAATATAGTGAATGCATCAATCAAACGCTCATACCTCTGGAATCACTTTGAAATTATCAAACTAACAGAAAACATGCGACTAAGCTGCATGTCCAATGAACCGCTAGAGAAGCAAAAGGTCGCTGAATTCGCTAAGTGGATTCTACATATCGGTGACGGAGCATCAGCATCAGATGAAGGAGAGGAATGGGTAAAAATCCCAAGTGATATCCTACTACAAAAAGGACAAGACCCAAAAGAAACAATCGTCAAAAGCATTTATCCAAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGGAAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATGACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGAACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAATGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGATTCTCAGAAGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAGGGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGAAAATGTCGCTAGAAACATTGTATACAAGGAGATTTTCTAA
More
|
|||||||
| Protein seq | MRPKIADFVMTKIFGENQQKANTKKSEDMQYKRRIILNFPTLRLTDSQKKAYALIEIEKLMRQAGKSLRDYPDIELPNAAEIEELGNRLINEELNYDKDQLKDEHLAILNSLNTDQKKAFDAIMESINGGQGKQIFVEGYGGTGKTYLWKALTTKLRSEGKIVLAVASCGIAALLLQGGRTAHSRFRIPIKITEESTCEIKQGTHLAELLKRTSLILWDEAPMANKHCFEALDKSLRDIMRFTNENSSERPFGGMTVVLGGDFRQILPVIPKGRRENIVNASIKRSYLWNHFEIIKLTENMRLSCMSNEPLEKQKVAEFAKWILHIGDGASASDEGEEWVKIPSDILLQKGQDPKETIVKSIYPNLLDNYREREFLEERAILCPRNETVQEINEYIMNQIQREEMTYLSCDTVCKAMTNNSSMEHMYPTEFLNTLKFPGIPNHELKLKVGLPVMLLRNINQTAGLCNGTRMTITQLGKKYIEAQIITGTHVDDKILRSCGLFEAASSRSSFWEKLQLGEAPPNRAVAFSRVTNRNGLKVLIDDSDCPEENVARNIVYKEIF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.495585 | 1.3851905 | 1.876717 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47410 | RBH | 0.291757 | 0.594070 | 0.310314 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0397200 | SBH | 0.598303 | 1.418852 | 2.442614 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
