Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g47410 | OGI:11082910 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:28517380-28519357 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGACCCAAAATAGCAGATTTTGTTATGACCAAAATTTTTGGTGAAAACCAGCAAAAGGCGAATACTAAAAAATCCGAGGACATGCAGTACAAGAGAAGAATAATCTTAAACTTTCCAACGCTGCGGTTAACAGATTCACAGAAGAAAGCATATGCCTTGATCGAAATAGAGAAACTAATGAGACAAGCAGGAAAATCGCTAAGGGACTACCCAGACATAGAGCTACCAAATGCTGCCGAGATAGAGGAACTTGGTAACAGACTTATAAACGAAGAGCTTAACTATGACAAAGACCAACTGAAGGATGAGCACCTCGCCATATTAAACAGCCTTAACACAGATCAGAAAAAAGCCTTCGATGCGATAATGGAATCTATCAACGGAGGGCAAGGAAAGCAAATATTTGTGGAAGGCTATGGCGGGACAGGGAAAACATACCTATGGAAAGCACTCACGACAAAACTAAGATCCGAGGGGAAGATAGTCCTTGCAGTTGCTTCATGTGGTATTGCAGCACTTCTACTCCAAGGTGGGAGAACGGCACACTCAAGATTTCGCATTCCAATAAAGATCACGGAAGAGTCAACATGCGAAATAAAGCAAGGAACCCATTTGGCCGAACTACTAAAAAGGACATCACTGATACTATGGGATGAGGCTCCGATGGCAAACAAGCATTGCTTTGAAGCATTGGACAAAAGCCTAAGAGATATAATGAGGTTCACTAATGAAAACAGCAGTGAAAGGCCATTTGGCGGCATGACAGTTGTATTGGGCGGGGACTTTAGACAGATCCTTCCGGTGATTCCAAAGGGAAGGAGAGAGAATATAGTGAATGCATCAATCAAACGCTCATACCTCTGGAATCACTTTGAAATTATCAAACTAACAGAAAACATGCGACTAAGCTGCATGTCCAATGAACCGCTAGAGAAGCAAAAGGTCGCTGAATTCGCTAAGTGGATTCTACATATCGGTGACGGAGCATCAGCATCAGATGAAGGAGAGGAATGGGTAAAAATCCCAAGTGATATCCTACTACAAAAAGGACAAGACCCAAAAGAAACAATCGTCAAAAGCATTTATCCAAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGGAAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATGACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGAACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAATGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGGTATACATACAATCATCATGTCACCGAGCGACACCAACTGGCCATTTGTCCTGAAAAGAAGACAACATCCTCTATTAGTTTGCTTCGCAATGACCATAAATAAAAGCCAAGGCCAGTCCCTGAACAAGGTTGGTTTATATCTACCTAAACAAGTCTTCTGCCATGGGGGCCTGTTTGGGGAGCTTTAGATTCCGAGAAGCAGCTGTTTGGTAGCCAGCTTTTGAGAATCTGGAAAAGCTCTGAAACCCAGCTTCTGGCTTCTTAGTTCATTTTTCAGAATCTATAACTGCAGATTCTCAGAAGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAGGGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGAAAATGTCGCTAGAAACATTGTATACAAGGAGATTTTCTAA
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| CDS seq | ATGAGACCCAAAATAGCAGATTTTGTTATGACCAAAATTTTTGGTGAAAACCAGCAAAAGGCGAATACTAAAAAATCCGAGGACATGCAGTACAAGAGAAGAATAATCTTAAACTTTCCAACGCTGCGGTTAACAGATTCACAGAAGAAAGCATATGCCTTGATCGAAATAGAGAAACTAATGAGACAAGCAGGAAAATCGCTAAGGGACTACCCAGACATAGAGCTACCAAATGCTGCCGAGATAGAGGAACTTGGTAACAGACTTATAAACGAAGAGCTTAACTATGACAAAGACCAACTGAAGGATGAGCACCTCGCCATATTAAACAGCCTTAACACAGATCAGAAAAAAGCCTTCGATGCGATAATGGAATCTATCAACGGAGGGCAAGGAAAGCAAATATTTGTGGAAGGCTATGGCGGGACAGGGAAAACATACCTATGGAAAGCACTCACGACAAAACTAAGATCCGAGGGGAAGATAGTCCTTGCAGTTGCTTCATGTGGTATTGCAGCACTTCTACTCCAAGGTGGGAGAACGGCACACTCAAGATTTCGCATTCCAATAAAGATCACGGAAGAGTCAACATGCGAAATAAAGCAAGGAACCCATTTGGCCGAACTACTAAAAAGGACATCACTGATACTATGGGATGAGGCTCCGATGGCAAACAAGCATTGCTTTGAAGCATTGGACAAAAGCCTAAGAGATATAATGAGGTTCACTAATGAAAACAGCAGTGAAAGGCCATTTGGCGGCATGACAGTTGTATTGGGCGGGGACTTTAGACAGATCCTTCCGGTGATTCCAAAGGGAAGGAGAGAGAATATAGTGAATGCATCAATCAAACGCTCATACCTCTGGAATCACTTTGAAATTATCAAACTAACAGAAAACATGCGACTAAGCTGCATGTCCAATGAACCGCTAGAGAAGCAAAAGGTCGCTGAATTCGCTAAGTGGATTCTACATATCGGTGACGGAGCATCAGCATCAGATGAAGGAGAGGAATGGGTAAAAATCCCAAGTGATATCCTACTACAAAAAGGACAAGACCCAAAAGAAACAATCGTCAAAAGCATTTATCCAAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGGAAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATGACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGAACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAATGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGATTCTCAGAAGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAGGGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGAAAATGTCGCTAGAAACATTGTATACAAGGAGATTTTCTAA
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| Protein seq | MRPKIADFVMTKIFGENQQKANTKKSEDMQYKRRIILNFPTLRLTDSQKKAYALIEIEKLMRQAGKSLRDYPDIELPNAAEIEELGNRLINEELNYDKDQLKDEHLAILNSLNTDQKKAFDAIMESINGGQGKQIFVEGYGGTGKTYLWKALTTKLRSEGKIVLAVASCGIAALLLQGGRTAHSRFRIPIKITEESTCEIKQGTHLAELLKRTSLILWDEAPMANKHCFEALDKSLRDIMRFTNENSSERPFGGMTVVLGGDFRQILPVIPKGRRENIVNASIKRSYLWNHFEIIKLTENMRLSCMSNEPLEKQKVAEFAKWILHIGDGASASDEGEEWVKIPSDILLQKGQDPKETIVKSIYPNLLDNYREREFLEERAILCPRNETVQEINEYIMNQIQREEMTYLSCDTVCKAMTNNSSMEHMYPTEFLNTLKFPGIPNHELKLKVGLPVMLLRNINQTAGLCNGTRMTITQLGKKYIEAQIITGTHVDDKILRSCGLFEAASSRSSFWEKLQLGEAPPNRAVAFSRVTNRNGLKVLIDDSDCPEENVARNIVYKEIF |
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| Function | ATP-dependent DNA helicase pif1 [UniProtKB/Swiss-Prot:A5WFR0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g47410 | LOC_Os11g47410.1 | Chr11 | 28517380 | 28519357 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGACCCAAAATAGCAGATTTTGTTATGACCAAAATTTTTGGTGAAAACCAGCAAAAGGCGAATACTAAAAAATCCGAGGACATGCAGTACAAGAGAAGAATAATCTTAAACTTTCCAACGCTGCGGTTAACAGATTCACAGAAGAAAGCATATGCCTTGATCGAAATAGAGAAACTAATGAGACAAGCAGGAAAATCGCTAAGGGACTACCCAGACATAGAGCTACCAAATGCTGCCGAGATAGAGGAACTTGGTAACAGACTTATAAACGAAGAGCTTAACTATGACAAAGACCAACTGAAGGATGAGCACCTCGCCATATTAAACAGCCTTAACACAGATCAGAAAAAAGCCTTCGATGCGATAATGGAATCTATCAACGGAGGGCAAGGAAAGCAAATATTTGTGGAAGGCTATGGCGGGACAGGGAAAACATACCTATGGAAAGCACTCACGACAAAACTAAGATCCGAGGGGAAGATAGTCCTTGCAGTTGCTTCATGTGGTATTGCAGCACTTCTACTCCAAGGTGGGAGAACGGCACACTCAAGATTTCGCATTCCAATAAAGATCACGGAAGAGTCAACATGCGAAATAAAGCAAGGAACCCATTTGGCCGAACTACTAAAAAGGACATCACTGATACTATGGGATGAGGCTCCGATGGCAAACAAGCATTGCTTTGAAGCATTGGACAAAAGCCTAAGAGATATAATGAGGTTCACTAATGAAAACAGCAGTGAAAGGCCATTTGGCGGCATGACAGTTGTATTGGGCGGGGACTTTAGACAGATCCTTCCGGTGATTCCAAAGGGAAGGAGAGAGAATATAGTGAATGCATCAATCAAACGCTCATACCTCTGGAATCACTTTGAAATTATCAAACTAACAGAAAACATGCGACTAAGCTGCATGTCCAATGAACCGCTAGAGAAGCAAAAGGTCGCTGAATTCGCTAAGTGGATTCTACATATCGGTGACGGAGCATCAGCATCAGATGAAGGAGAGGAATGGGTAAAAATCCCAAGTGATATCCTACTACAAAAAGGACAAGACCCAAAAGAAACAATCGTCAAAAGCATTTATCCAAACTTGCTGGACAACTACCGTGAAAGAGAATTTCTAGAGGAAAGAGCTATCCTATGCCCAAGAAACGAAACAGTCCAGGAAATTAATGAGTACATAATGAACCAAATACAACGAGAAGAAATGACATACCTAAGCTGTGACACCGTTTGCAAAGCGATGACAAACAACAGTAGCATGGAGCACATGTATCCTACCGAGTTCCTCAACACGTTGAAATTCCCTGGAATACCAAACCACGAACTTAAGCTTAAAGTAGGCCTGCCTGTCATGCTACTTCGTAACATCAACCAAACTGCAGGCCTATGCAACGGCACGAGAATGACAATCACACAGTTAGGTAAGAAATACATCGAAGCACAGATCATAACAGGTACACATGTGGACGACAAGATTCTCAGAAGCTGTGGACTGTTTGAGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGAGAAGCTCCCCCAAACAGGGCGGTAGCATTCTCTAGAGTCACAAACCGAAATGGCCTGAAGGTTCTGATTGATGATTCAGATTGTCCCGAAGAAAATGTCGCTAGAAACATTGTATACAAGGAGATTTTCTAA
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| Protein seq | MRPKIADFVMTKIFGENQQKANTKKSEDMQYKRRIILNFPTLRLTDSQKKAYALIEIEKLMRQAGKSLRDYPDIELPNAAEIEELGNRLINEELNYDKDQLKDEHLAILNSLNTDQKKAFDAIMESINGGQGKQIFVEGYGGTGKTYLWKALTTKLRSEGKIVLAVASCGIAALLLQGGRTAHSRFRIPIKITEESTCEIKQGTHLAELLKRTSLILWDEAPMANKHCFEALDKSLRDIMRFTNENSSERPFGGMTVVLGGDFRQILPVIPKGRRENIVNASIKRSYLWNHFEIIKLTENMRLSCMSNEPLEKQKVAEFAKWILHIGDGASASDEGEEWVKIPSDILLQKGQDPKETIVKSIYPNLLDNYREREFLEERAILCPRNETVQEINEYIMNQIQREEMTYLSCDTVCKAMTNNSSMEHMYPTEFLNTLKFPGIPNHELKLKVGLPVMLLRNINQTAGLCNGTRMTITQLGKKYIEAQIITGTHVDDKILRSCGLFEAASSRSSFWEKLQLGEAPPNRAVAFSRVTNRNGLKVLIDDSDCPEENVARNIVYKEIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.291757 | 0.594070 | 0.310314 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45880 | RBH | 1.468142 | 1.518606 | 1.011184 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0446100 | RBH | 1.495585 | 1.3851905 | 1.876717 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0397200 | SBH | 0.598303 | 1.418852 | 2.442614 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
