Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_07G0315400 | OGI:07052010 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr07:19868445-19869624 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGCCTCCCTATAAGGAGCGTTGCCACTAGTGGAGACCCGAGTCCCGACCACGACGTCCGCCGCGGTCGCTGCCACTGCACTGCACTCTACCCCGGCGAGCACCACGACCGGCGGCGAGAGATGCAGATCTTCGTGAGGACGCTGGACGAGTGCATCACGCTCGAGGTCGAGGGCAGCGACTCCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGTATATAATTGATTAACTCGCTTAGCTGAGCTCCTCCCCTTCGCCCTGCTCGTCGGTGGCCGGCAAAGCCAACTGCATTTCCTCTCGCGCTTATCGGAATAGTCCAGCTCCGCCTTTTCTTTAACCGTCCCGATTCGAGGATTTCAGGGGATGAAAATCATAGCTTTCCTTTCTCTTAAAAAAAAATTATCCGATTGGGTAGTGAACGATCGATAAGGTTATTGGATTAGTTTGCTTCCACTTGTGTTTCTTGAGAGCAAGAATTGTATGGGGGGATTGGTGTATTTCTTGCCAAATCGCTGGACATTCCAATTTGATTACCATTTACCAGTTTGTACCATGAATTTGGGGGTTAATTTGGTTTGAGTTGTACGGCAGGCATCCCGGCGGACGACCAGCGGCTGATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGCCATTCGTCTCCGCCGCCGCGGCCAACCTCCTCACACTCGCGCTCAAGCACAATGAGAAGAAGATGATCTGTCGCAGGCACGTCCTTTAATTTGCGCATTTCCATCCAAAAACCCAATTAGGGGAGTCACTCTCCTTGATTTGAGAATCTGCGGCGGCCCCATTGTTTCGTTTTTTCGGAAATAATCCAAACGGCATATTTACAAACTAAAAATAATTTGTTAACAAAACTTTTATATACGTGTTCTTACCAATCTAAAAGTTAAGCTTGGAAAATAAGCTTGATAAAAAAACTTCAAAATCAACTTTAAATTTAAGATTGAAAATTCAAATTTTGGTTGATAAGCATAAGTATAAGCGAAAAGATGAGGCCGTAGTTCGCCGCGTGCAAACGAAAGTAGCAGCTTTTGGTTGCAAATTAACTAATTTCTTGGTTGCAGTTTGCGGTGGTATGAAATGCGAAATAGAGCTTACTTGG
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| CDS seq | ATGCAGATCTTCGTGAGGACGCTGGACGAGTGCATCACGCTCGAGGTCGAGGGCAGCGACTCCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGCATCCCGGCGGACGACCAGCGGCTGATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGCCATTCGTCTCCGCCGCCGCGGCCAACCTCCTCACACTCGCGCTCAAGCACAATGA |
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| Protein seq | MQIFVRTLDECITLEVEGSDSIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYGIQTEHTLRLAIRLRRRGQPPHTRAQAQ |
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| Function | Polyubiquitin-A [UniProtKB/Swiss-Prot:P0CG76] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_07G0315400 | OsZS97_07T0315400.1 | Chr07 | 19868445 | 19869624 | + | makerRMon | ||
| CDS seq | ATGCAGATCTTCGTGAGGACGCTGGACGAGTGCATCACGCTCGAGGTCGAGGGCAGCGACTCCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGCATCCCGGCGGACGACCAGCGGCTGATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGCCATTCGTCTCCGCCGCCGCGGCCAACCTCCTCACACTCGCGCTCAAGCACAATGA
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| Protein seq | MQIFVRTLDECITLEVEGSDSIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYGIQTEHTLRLAIRLRRRGQPPHTRAQAQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.194924 | 0.2237165 | 10.4666745 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0492200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g30990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0492200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015740 | SBH | 1.227475 | 19.079094 | 11.924482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004741 | SBH | 152.594208 | 376.591431 | 476.852570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0305000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026001 | SBH | 8.491142 | 14.054948 | 25.362541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0508200 | SBH | 94.768074 | 96.079468 | 134.9494895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015750 | SBH | 1.089079 | 1.743386 | 1.720531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004751 | SBH | 9.700830 | 34.566254 | 65.454994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
