Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0492200 | OGI:07052010 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:18354973-18355659 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGAGCACCACGACCGGCGGCGAGAGATGCAGATCTTCGTGAGGACGCTGGACGAGTGCATCACGCTGGAGGTCGAGGGCAGCGACACCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGTATATAATTGATTAACTCGCTTAGCTGAGCTCCTCCCCTTCGCCCTGCTCGTCGGTGGCCGGCAAAGCCAACTGCATTTCCTCTCGCGCTTATCGGAATAGTCCAGCTCCGCCTTTTCTTTAACCGTCCCGATTCGAGGATTTCAGGGTATGAAAATCATAGCTTTCCTTTCTCTTAAAAAAAAAATTATCCGATTGGGTAGTGAACGATCGATAAGGTTATTGGATTAGTTTGCTTCCACTTGTGTTTCTTCAGAGCAAGAATTGTATGGGGGGATTGGTGTATTTCTTGCCAAATCGCTGGACATTCCAATTTGATTACCATTTACCAGTTTGTACCATGAATTTGGGGGTTAATTTGGTTTGAGTTGTACGGCAGGCATCCCGGCGGACGACCAGCGGCTGATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGCCATTCGTCTCCGCCGCCGCGGCCAACCTCCTCACACTCGCGCTCAAGCACAATGAGAAGAAGATGATCTGTCGCA
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| CDS seq | ATGCAGATCTTCGTGAGGACGCTGGACGAGTGCATCACGCTGGAGGTCGAGGGCAGCGACACCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGCATCCCGGCGGACGACCAGCGGCTGATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGCCATTCGTCTCCGCCGCCGCGGCCAACCTCCTCACACTCGCGCTCAAGCACAATGA |
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| Protein seq | MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYGIQTEHTLRLAIRLRRRGQPPHTRAQAQ |
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| Function | Ubiquitin-60S ribosomal protein L40 [UniProtKB/Swiss-Prot:P0DJ25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0492200 | Os07t0492200-00 | Chr07 | 18354973 | 18355659 | + | irgsp1_rep | ||
| CDS seq | ATGCAGATCTTCGTGAGGACGCTGGACGAGTGCATCACGCTGGAGGTCGAGGGCAGCGACACCATCGGCGACGTCAAGGTCAAGATCCACGACAAGAACGGCATCCCGGCGGACGACCAGCGGCTGATGCACGCCGGGAGGCAGCTGGATGATCGACGGACGCTGGCCGACTACGGCATCCAGACGGAGCACACGCTTCGCCTCGCCATTCGTCTCCGCCGCCGCGGCCAACCTCCTCACACTCGCGCTCAAGCACAATGA
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| Protein seq | MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYGIQTEHTLRLAIRLRRRGQPPHTRAQAQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0492200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g30990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0628100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015740 | SBH | 1.227475 | 19.079094 | 11.924482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0015640 | SBH | 0.550605 | 6.518079 | 4.266741 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015610 | SBH | 2.840618 | 18.904581 | 17.383957 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015500 | SBH | 0.236622 | 0.598196 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015590 | SBH | 11.600965 | 33.826622 | 36.452370 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0305000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016080 | SBH | 0.548930 | 1.788210 | 2.783268 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0315400 | RBH | 0.194924 | 0.2237165 | 10.4666745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015340 | SBH | 0.654042 | 0.596772 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015510 | SBH | 0.919648 | 18.761948 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015520 | SBH | 6.973954 | 32.681980 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015750 | SBH | 1.089079 | 1.743386 | 1.720531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015540 | SBH | 0.657201 | 9.223148 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015480 | SBH | 0.680484 | 7.582904 | 7.112821 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015400 | SBH | 2.138787 | 23.740938 | 17.030880 |
