Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_06G0408900 | OGI:06076600 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr06:28221127-28223257 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACCCTAATTGTTCGTCATCTAAATAAAGGTTTTCGAACTGTGCGGCCAATTCTTGGTTGTCAGCAGTGTATTGGGCATGTTCTGCAGCAAGTTCCCAGTCTTTGACGCTTAATAGTATTTCCACATGATCGCTGCTCAGACTTGTTCTCCTATCCTCGATAATTCTTCCGCATAGACTGAAGGCTGATTCGGAGGATACCGAAGATACGGGCACCGTCAACACATCCCGTGCTAGTTTTGATAGCACAGGATATGACATCTTATGATCATTCCACCACCCGAGTACGTTGAAGTCTGACGTTTCATGCCTGATGGCATCGCTATCCAAATAGTTGGACAACTCTTCAGCAGGACCATGCGATCTAGCGTCTCCACTTGCTGCTGATGAACTGGTACCATCGCTAGAAGATGAACCGCCCCAAATTCTGCTCCACTGTAATTTTTTCTTACCTGCTGCAGGGACAGGTGGGGGTCTTTGCAAGCGATCTCCCTGAAACTTTAATTCATACTTTCGAAATACCTCATAGAATTTAGTTTTGACATCAGCATAATAGGTAGAATAATCAACATTAATAATATCTCCAATAAGTGAAAGAATATCAAGGAATCCCCGTAATTTTCCCCTAGGATCAAGAATAAATGCAAAAGGATACAACATGGGGATGTCTTTCCAATATTTAAGATATTTTTGTTTCATATTAAAGACAACTGGCATTAAAAGGTCATCATTTTCATACTCTTTCAACAAAGTGGCAATTTCAAGAATATTATGCAAAATTAAATTAGCTGTTGGATAATATACTTGAGATAACAGAAGAGTACAGTCATGAAACGTTTCAAGAAATTGATTGAACCTTTCAACAATGTGCCAGGTATGATCAGTCAGTATTGGCTGGCCGTCACTGTTTTTTGGGCCATTACGTGTTTGAAGGAAAACAGTAAGTAAATCCTTGTAAGGTAATACAACCTTTAACATAAAATAAGTGGCATTCCACCGATGGTCTGCATCAGTTAAAAACTTACGTGGGGGCTCACCCGATGCACAACAATACCTTTTCCACTGTGCAATCCATGGGTTTGAAGCAGTTAACCACGTGATTGCTTGACGAACAGCGTCGATGTGTACATTAACTCTCTTAAACCCACATTTAACAATTAGATTAATGATATGGCATGCACAACGCTGATGCAGAAGAAATGATTGAGCATAAATACAAAATAATGGTTGTAGAATTTCCATGGCCCTAGAATTTTGCAGATGCATTATCCATTGTTACAGCAAAAATTTTATCTGCAAGGTTAAACTCATCAATAACCTCTCGAATTCTCTCTGCTATATTTTCACCAGTATGTGAAACATCAATTAACCTTAAGCCAAGAACTCTTTTTTGCATTTGCCAATCATCATCAATGAAATGTACAACTACACTAAGGTAATCCTCTTTAGCCCTACTACTCCATATGTCTAAGGTAACACTGACAGAAAAGGTGCATGTACTAAATAATTCCTTCAGTGATTCATAACCTTAGTCATAGACATTTTTCAAATCACGGGTTGTGGTTTGTCTACTAATAGCTTGAAACCTAGGATTATGAGAATTTTTTATGTAATTTTCAAATGCAGGACTCTCACCAAAGTTCAAGGGTAAATCTTGTCTAGCAATTAAACGGGAAAGATTTTCTCGAGCTACCATAGGATCATACTCTCATGTACGTACCGTACCATCAGGATTTAGTAGTAGTTGTTGCTGTCGTAGTTGGATTCCTTGCTTCTTTGCACAAGCCTCGGCATGCCGCTTCAAATGTCCTGTTCCACCAGATGATTTTGCAGATAACTTATTTTTGCATATTTTACATCTCGCGAATGTTACCTGCCTTCCATCAGGGCCTGTCATGGCCACCTCATCGAAATGTTGCCAAACACCGGAAGTTCTTGATCTCTTTGAGCCGGTGTTCGTCGATGCACTCCCACTCATAGTGCCGGATGCTTCTGAACCCGCCGGTGGCTCCATAACTGGTGGTGTTGGAGCCGATCCGGTGGCATCATACTCACCAGTTGGGAATGACCTCGACACGTAGTTAGGGTCGAAATCACCTAACGTGAACGATGGAATGTTCGATTTGTCCAT
More
|
||||||||||
| CDS seq | ATGGACAAATCGAACATTCCATCGTTCACGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCGGCGGGTTCAGAAGCATCCGGCACTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCATGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAAAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAACAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCGATGGTACCAGTTCATCAGCAGCAAGTGGAGACGCTAGATCGCATGGTCCTGCTGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGGTAG
More
|
||||||||||
| Protein seq | MDKSNIPSFTLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMTGPDGRQVTFARCKICKNKLSAKSSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDAGKKKLQWSRIWGGSSSSDGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG |
||||||||||
| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_06G0408900 | OsZS97_06T0408900.1 | Chr06 | 28221127 | 28223257 | - | makerRMon | ||
| CDS seq | ATGGACAAATCGAACATTCCATCGTTCACGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCGGCGGGTTCAGAAGCATCCGGCACTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCATGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAAAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAACAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCGATGGTACCAGTTCATCAGCAGCAAGTGGAGACGCTAGATCGCATGGTCCTGCTGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGGTAG
More
|
|||||||
| Protein seq | MDKSNIPSFTLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMTGPDGRQVTFARCKICKNKLSAKSSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDAGKKKLQWSRIWGGSSSSDGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.042479 | 0.05562 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0801700 | SBH | 0.0 | 0.0 | 2.297632 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38540 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0801700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021190 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021030 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021140 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020870 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0425800 | RBH | 0 | 0.018765 | 0.0571665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0497100 | RBH | 0.0646585 | 0.353578 | 0.0425565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020850 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
