Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0425800 | OGI:06076600 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:28067257-28070152 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCTGCCCTTGCACACGCGGGTGCAGCGCGTTGCATCGCGCGGGCCTGGCCGAGCAGCGAAGCTCAAATCTATACCTGGCCAAACGGGCGGCCCGGCCCAGCACGGCACGGGCATGCCGGCGGCACGGCCCGCTAGGGCACGGCCTGTTAGGCACGACTCCTGTAGCGGGCCGTGCCGTGCCGGCTCACGTGCCTACTCCCCGGTCCAAGCACGGCCCGAGGGAACGTCGTGCCGTGCCGTGTCGGCACGGGCACGTCAATGGCCCATGGGTCTTGGTGGGCCCGTTGGCACGATCGACTGCAGGCAAGCTGGCAAGGCGACAACGCCGACAAGGCGCGCGCGCGGATGAAAATTTGGACGCGGCACGTGGGAGCGAGCGGCCGGGGCCGCGGGACCGGCCGGACGAAGGGCGACACGTGGCGCAGGACTTGCTGAATGCTGACTCAGTGACTTGCCTCTGTCCGTGTGTCTATCGCCTGTCACTCTGTCAGTGGAACAATTCAAATCAAAGAGAAAGGTCCGAAAGTTAACTAAGCTAAGAGAAAATTAATGGATAGTTGGAGAAAAATAGAAAAATAATTAGACTTAGAAAAATATTAGAAAAATATGGGGAAAAAAGAGTAATGACCTTTATTGATGTTTACATGATACATACTGCCTCGTTAAAAACTTTGTCATGTAAAAACTCATATTTGAGAAAACCATGACAAAGAAAAGAGTACAGCCAACAGGTCAATACTTAAAAAATATAAACTAGCTACCCTAATTGTTCGTCATCTAAATAAAGGTTTTCGAACTGTGCGGCCAATTCTTGGTTGTCAGCAGTGTATTGGGCATGTTCTGCAGCAAGTTCCCAGTCTTTGACGCTTAATAGTATTTCCACATGATCGCTGCTCAGACTTGTTCTCCTATCCTCGATAATTCTTCCGCATAGACTGAAGGCTGATTCGGAGGATACCGAAGATACGGGCACCGTCAACACATCCCGTGCTAGTTTTGATAGCACAGGATATGACATCTTATGATCATTCCACCACCCGAGTACGTTGAAGTCTGACGTTTCATGCCTGATGGCATCGCTATCCAAATAGTTGGACAACTCTTCAGCAGGACCATGCGATCTAGCGTCTCCACTTGCTGCTGATGAACTGGTACCATCGCTAGAAGATGAACCGCCCCAAATTCTGCTCCACTGTAATTTTTTCTTACCTGCTGCAGGGACAGGTGGGGGTCTTTGCAAGCGATCTCCCTGAAACTTTAATTCATACTTTCGAAATACCTCATAGAATTTAGTTTTGACATCAGCATAATAGGTAGAATAATCAACATTAATAATATCTCCAATAAGTGAAAGAATATCAAGGAATCCCCGTAATTTTCCCCTAGGATCAAGAATAAATGCAAAAGGATACAACATGGGGATGTCTTTCCAATATTTAAGATATTTTTGTTTCATATTAAAGACAACTGGCATTAAAAGGTCATCATTTTCATACTCTTTCAACAAAGTGGCAATTTCAAGAATATTATGCAAAATTAAATTAGCTGTTGGATAATATACTTGAGATAACAGAAGAGTACAGTCATGAAACGTTTCAAGAAATTGATTGAACCTTTCAACAATGTGCCAGGTATGATCAGTCAGTATTGGCTGGCCGTCACTGTTTTTTGGGCCATTACGTGTTTGAAGGAAAACAGTAAGTAAATCCTTGTAAGGTAATACAACCTTTAACATAAAATAAGTGGCATTCCACCGATGGTCTGCATCAGTTAAAAACTTACGTGGGGGCTCACCCGATGCACAACAATACCTTTTCCACTGTGCAATCCATGGGTTTGAAGCAGTTAACCACGTGATTGCTTGACGAACAGCGTCGATGTGTACATTAACTCTCTTAAACCCACATTTAACAATTAGATTAATGATATGGCATGCACAACGCTGATGCAGAAGAAATGATTGAGCATAAATACAAAATAATGGTTGTAGAATTTCCATGGCCCTAGAATTTTGCAGATGCATTATCCATTGTTACAGCAAAAATTTTATCTGCAAGGTTAAACTCATCAATAACCTCTCGAATTCTCTCTGCTATATTTTCACCAGTATGTGAAACATCAATTAACCTTAAGCCAAGAACTCTTTTTTGCATTTGCCAATCATCATCAATGAAATGTACAACTACACTAAGGTAATCCTCTTTAGCCCTACTACTCCATATGTCTAAGGTAACACTGACAGAAAAGGTGCATGTACTAAATAATTCCTTCAGTGATTCATAACCTTAGTCATAGACATTTTTCAAATCACGGGTTGTGGTTTGTCTACTAATAGCTTGAAACCTAGGATTATGAGAATTTTTTATGTAATTTTCAAATGCAGGACTCTCACCAAAGTTCAAGGGTAAATCTTGTCTAGCAATTAAACGGGAAAGATTTTCTCGAGCTACCATAGGATCATACTCTCATGTACGTACCGTACCATCAGGATTTAGTAGTAGTTGTTGCTGTCGTAGTTGGATTCCTTGCTTCTTTGCACAAGCCTCGGCATGCCGCTTCAAATGTCCTGTTCCACCAGATGATTTTGCAGATAACTTATTTTTGCATATTTTACATCTCGCGAATGTTACCTGCCTTCCATCAGGGCCTGTCATGGCCACCTCATCGAAATGTTGCCAAACACCGGAAGTTCTTGATCTCTTTGAGCCGGTGTTCGTCGATGCACTCCCACTCATAGTGCCGGATGCTTCTGAACCCGCCGGTGGCTCCATAACTGGTGGTGTTGGAGCCGATCCGGTGGCATCATACTCACCAGTTGGGAATGACCTCGACACGTAGTTAGGGTCGAAATCACCTAACGTGAACGATGGAATGTTCGATTTGTCCATTCTGA
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| CDS seq | ATGCATCTGCAAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACACATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCATGGATTGCACAGTGGAAAAGGTATTGTTGTGCATCGGGTGAGCCCCCACAGTATGAAAATGATGACCTTTTAATGCCAGTTGTCTTTAATATGAAACAAAAATATCTTAAATATTGGAAAGACATCCCCATGTTGTATCCTTTTGCATTTATTCTTGATCCTAGGGGAAAATTACGGGGATTCCTTGATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCCTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCGATGGTACCAGTTCATCAGCAGCAAGTGGAGACGCTAGATCGCATGGTCCTGCTGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGCATTCAGCAAGTCCTGCGCCACGTGTCGCCCTTCGTCCGGCCGGTCCCGCGGCCCCGGCCGCTCGCTCCCACGTGCCGCGTCCAAATTTTCATCCGCGCGCGCGCCTTGTCGGCGTTGTCGCCTTGCCAGCTTGCCTGCAGTCGATCGTGCCAACGGGCCCACCAAGACCCATGGGCCATTGACGTGCCCGTGCCGACACGGCACGGCACGACGTTCCCTCGGGCCGTGCTTGGACCGGGGAGTAGGCACGTGAGCCGGCACGGCACGGCCCGCTACAGGAGTCGCCGTGCCCTAGCGGGCCGTGCCGCCGGCATGCCCGTGCCGTGCTGGGCCGGGCCGCCCGTTTGGCCAGGTATAGATTTGAGCTTCGCTGCTCGGCCAGGCCCGCGCGATGCAACGCGCTGCACCCGCGTGTGCAAGGGCAGGTGA
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| Protein seq | MHLQNSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVHIDAVRQAITWLTASNPWIAQWKRYCCASGEPPQYENDDLLMPVVFNMKQKYLKYWKDIPMLYPFAFILDPRGKLRGFLDILSLIGDIINVDYSTYYADVKTKFYEGDRLQRPPPVPAAGKKKLQWSRIWGGSSSSDGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLGIQQVLRHVSPFVRPVPRPRPLAPTCRVQIFIRARALSALSPCQLACSRSCQRAHQDPWAIDVPVPTRHGTTFPRAVLGPGSRHVSRHGTARYRSRRALAGRAAGMPVPCWAGPPVWPGIDLSFAARPGPRDATRCTRVCKGR |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0425800 | OsMH63_06T0425800-mRNA-1 | Chr06 | 28067257 | 28070152 | - | maker | ||
| CDS seq | ATGCATCTGCAAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACACATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCATGGATTGCACAGTGGAAAAGGTATTGTTGTGCATCGGGTGAGCCCCCACAGTATGAAAATGATGACCTTTTAATGCCAGTTGTCTTTAATATGAAACAAAAATATCTTAAATATTGGAAAGACATCCCCATGTTGTATCCTTTTGCATTTATTCTTGATCCTAGGGGAAAATTACGGGGATTCCTTGATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCCTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCGATGGTACCAGTTCATCAGCAGCAAGTGGAGACGCTAGATCGCATGGTCCTGCTGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGCATTCAGCAAGTCCTGCGCCACGTGTCGCCCTTCGTCCGGCCGGTCCCGCGGCCCCGGCCGCTCGCTCCCACGTGCCGCGTCCAAATTTTCATCCGCGCGCGCGCCTTGTCGGCGTTGTCGCCTTGCCAGCTTGCCTGCAGTCGATCGTGCCAACGGGCCCACCAAGACCCATGGGCCATTGACGTGCCCGTGCCGACACGGCACGGCACGACGTTCCCTCGGGCCGTGCTTGGACCGGGGAGTAGGCACGTGAGCCGGCACGGCACGGCCCGCTACAGGAGTCGCCGTGCCCTAGCGGGCCGTGCCGCCGGCATGCCCGTGCCGTGCTGGGCCGGGCCGCCCGTTTGGCCAGGTATAGATTTGAGCTTCGCTGCTCGGCCAGGCCCGCGCGATGCAACGCGCTGCACCCGCGTGTGCAAGGGCAGGTGA
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| Protein seq | MHLQNSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVHIDAVRQAITWLTASNPWIAQWKRYCCASGEPPQYENDDLLMPVVFNMKQKYLKYWKDIPMLYPFAFILDPRGKLRGFLDILSLIGDIINVDYSTYYADVKTKFYEGDRLQRPPPVPAAGKKKLQWSRIWGGSSSSDGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLGIQQVLRHVSPFVRPVPRPRPLAPTCRVQIFIRARALSALSPCQLACSRSCQRAHQDPWAIDVPVPTRHGTTFPRAVLGPGSRHVSRHGTARYRSRRALAGRAAGMPVPCWAGPPVWPGIDLSFAARPGPRDATRCTRVCKGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0425800 | OsMH63_06T0425800-mRNA-2 | Chr06 | 28067257 | 28070147 | - | maker | ||
| CDS seq | ATGCATCTGCAAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACACATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCATGGATTGCACAGTGGAAAAGGGGAAAATTACGGGGATTCCTTGATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCCTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCGATGGTACCAGTTCATCAGCAGCAAGTGGAGACGCTAGATCGCATGGTCCTGCTGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGCATTCAGCAAGTCCTGCGCCACGTGTCGCCCTTCGTCCGGCCGGTCCCGCGGCCCCGGCCGCTCGCTCCCACGTGCCGCGTCCAAATTTTCATCCGCGCGCGCGCCTTGTCGGCGTTGTCGCCTTGCCAGCTTGCCTGCAGTCGATCGTGCCAACGGGCCCACCAAGACCCATGGGCCATTGACGTGCCCGTGCCGACACGGCACGGCACGACGTTCCCTCGGGCCGTGCTTGGACCGGGGAGTAGGCACGTGAGCCGGCACGGCACGGCCCGCTACAGGAGTCGCCGTGCCCTAGCGGGCCGTGCCGCCGGCATGCCCGTGCCGTGCTGGGCCGGGCCGCCCGTTTGGCCAGGTATAGATTTGAGCTTCGCTGCTCGGCCAGGCCCGCGCGATGCAACGCGCTGCACCCGCGTGTGCAAGGGCAGGTGA
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| Protein seq | MHLQNSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVHIDAVRQAITWLTASNPWIAQWKRGKLRGFLDILSLIGDIINVDYSTYYADVKTKFYEGDRLQRPPPVPAAGKKKLQWSRIWGGSSSSDGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLGIQQVLRHVSPFVRPVPRPRPLAPTCRVQIFIRARALSALSPCQLACSRSCQRAHQDPWAIDVPVPTRHGTTFPRAVLGPGSRHVSRHGTARYRSRRALAGRAAGMPVPCWAGPPVWPGIDLSFAARPGPRDATRCTRVCKGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0425800 | OsMH63_06T0425800-mRNA-3 | Chr06 | 28069263 | 28070148 | - | maker | ||
| CDS seq | ATGGACAAATCGAACATTCCATCGTTCACGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCGGCGGGTTCAGAAGCATCCGGCACTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCATGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAAAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAACAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGGTACGGAATTATTTAGTACATGCACCTTTTCTGTCAGTGTTACCTTAGACATATGGAGTAGTAGGGCTAAAGAGGATTACCTTAGTGTAGTTGTACATTTCATTGATGATGATTGGCAAATGCAAAAAAGAGTTCTTGGCTTAAGGTTAATTGATGTTTCACATACTGGTGAAAATATAGCAGAGAGAATTCGAGAGGTTATTGATGAGTTTAACCTTGCAGATAAAATTTTTGCTGTAACAATGGATAATGCATCTGCAAAATTCTAG
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| Protein seq | MDKSNIPSFTLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMTGPDGRQVTFARCKICKNKLSAKSSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDGTELFSTCTFSVSVTLDIWSSRAKEDYLSVVVHFIDDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLADKIFAVTMDNASAKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.018765 | 0.0571665 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45810 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021190 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021030 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021140 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020870 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0078800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0408900 | RBH | 0 | 0.042479 | 0.05562 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0021140 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020850 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
