Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_04G0249700 | OGI:04051520 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr04:17122881-17125326 | ||||||||
| Gene Symbol | SMG2, YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10, MAPKKKEPSILON, OsMAPKKKepsilon, MAPKKKepsilon, OsMAPKKK24, MAPKKK24, OsMAPKKK&epsilon, - | ||||||||||
| DNA seq | CTTTTCCTTTTTAGTTGAGTTTCGCCTCTCCTCCTTTCCTTGTCTCCATTCTGATTGATTCGTTTCTTCGCGCAAGCACTTGGTTCGCCCCTTACTATAACCATCCCACTCAATCTTTTACACCGATGTTTCATATGCTCTTGATCACATCATCATAAGAAAATACTGCCAAATCTTTCCGAAATGAGAGAAGGAGGGAAGGCATGTTACAACTTACTGCTTAAAACTACAAGATTAGCGCTAAGAAGCAACCCTAGTTTAAGTACTAGCGTCCCACCCCAACGTTCTTGTACTTAAAAAGACTCTCCCCGCTTGCTGCTCGCCTCAGCCAGACGTGGCTTATGTAGTGGTCGGCATTCCTACGTACTCCGAGTGATTCCCACACGAGATTATATGAGAAGATTTATACGTGCTCCGACTTATTGCCTCAGCCTTTTAGAAGGGCATTTGGTGCAAGTGTAGTCACCAATAGTATTGTGGCATATTCCTCGACAGATGCCTGTTATACTACACTAGTCCACATCTGTAACCACACACATTGAGAGCGAAGAGATGTCCTCATCGCACCTTATTGAGGAGTCTTAGCTTCAAGATGTCATTACAGACATTATAGACCTTACTGACCTATTCACGAAAGGATGGTCCAATAATTTGGATGCAGAAGGTCTATCATCCGGATATGGTCTCAAACACTGGCTTATGAAATCACGAGCCTCCTTTGAAAGGTATTTTGGGATTGCTGGTGGTTCACCCCTTCCGATCTTAAATAAAGCTTGTGCCTGTAAAACAACAATTGAAGAAATAGTTGGACACATTTAATTGAACAAGAATTGAAGGAATAATTCAAGGGAATTGGATCATAGTGGACACATTTAATTTATCGAATTTTGACACATAATTTAATTCTACAGTGGAAAACAATTTTCCTGATGAAGAATAACTCACCCATTCTAAATTTGGGTAAGGCAGTTGACGTGTCAACATCTCCAGGACTGTGCAACCGAGACTCCATATATCAGCTGCCGTTCCATATGTCCTCTTGGGATTGACAACCTGAATGTTCAGTGTATAGATTTAAGCTGAATTAAGCGGCGTACTGCTGGTAAATTTCAGTACATGAGAACAAAACTCTACCTTTGCCATCATAGACAGTTTTTACTATTTGATATAATACTAGCTAGCCAGTTCTTAGCGTTTATTAACATTAAATTGTTGGATATATCCATGGCCACATTGTGCCAGCTGACTTTCACTTTCACCCAAGTCCACAATGTATATGTGCCGCTCATTTTTAGGATAATATTTCAGTACTTTTTATTCTGGACAAAACATCGAAGGAGGGGGAGAAAGCTATGGTGACAAAAAATCTTAGCATGTCCATTTTGTTATTTCTTTATTTTTTATAGAAAAAACTCATCGATCATGCATGGTGGTATACCTCGGGTGCCATCCAATAAACACTTCCTTCACATGATTTAAGCATGCTGAATTTGTTTATCTGAAAGAGATAACTAATAAATCAAGAGTAGAACAAAGTCAGTAACAAAGAACTGAAAGATCTAACACAAACATAAATACAGATTCTGCCCAGCAGAAAGCAGAGACCTGCTTAGCAAGACCAAAGTCGGCAAGTTTCACAGATCCATTCCTATGCACCAGTATATTGCCACACTTCACATCCCTACAAGAATTTTGAACATTGAAGTACATGAGTATATAATTAATATTTTATTCCTTTGCAAGACAAATTGAGAAATCTAGTGAGCAATTTATAATTAAGAAATCCCATTTATGCTACAAAATTACAGGTTGAAATTGCCTATGGTGCAAACAGACGTATGAATATTACCGATGAACAATGTTTCTGTTGTGGAGGTAAGTCAACCCATTAAGGATTTGTTTTGTATATCGCGAAACATGAGAATTTCGCAGGCGATATTTCTGGTACAAGGATGCAAGAGAGCCTTGTGACATTAGTTCTAGGAAGACGTAAAGTTTTGAGTCCTCCTGCAGTCGTCACACAATGGATGATCATATTAACCTTAAAAGAAATATGTATAAGAAAACCTATGAATTTATATACAACACAATAACACATATTACTTCAACAAATAGATGAACAACCACAAGATCCCCTAAAGGCAAAGATCACAAGATCGATCAGGAGCTTACTTTGTCTGTACCATAGTACTGTACAATGTTATTGTGTTGCAGACGACTCAGGAGTGCAATTTCCTGAACAGATTATTAGAAATTAGTAGATGCTTTATGATCTGAAAATACACCATTACCAACAGAAATATATATACTCCATATATTATCAACAAGAGAAGCATCTAGCGAAACCAACCTGCTGAAGCTGAAAAATACACTGTTGTGCATCGTCGTATTTCCCTTGATCATCTAAGTACACTTCTTTGACAGCAAAGAAAACACCCTCGCTGTT
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| CDS seq | AACAGCGAGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGTACTATGGTACAGACAAAGAGGACTCAAAACTTTACGTCTTCCTAGAACTAATGTCACAAGGCTCTCTTGCATCCTTGTACCAGAAATATCGCCTGCGAAATTCTCATGTTTCGCGATATACAAAACAAATCCTTAATGGGTTGACTTACCTCCACAACAGAAACATTGTTCATCGGGATGTGAAGTGTGGCAATATACTGGTGCATAGGAATGGATCTGTGAAACTTGCCGACTTTGGTCTTGCTAAGCAGGTCTCTGCTTTCTGCTGGGCAGAATCTATAAACAAATTCAGCATGCTTAAATCATGTGAAGGAAGTGTTTATTGGATGGCACCCGAGGTTGTCAATCCCAAGAGGACATATGGAACGGCAGCTGATATATGGAGTCTCGGTTGCACAGTCCTGGAGATGTTGACACGTCAACTGCCTTACCCAAATTTAGAATGGGCACAAGCTTTATTTAAGATCGGAAGGGGTGAACCACCAGCAATCCCAAAATACCTTTCAAAGGAGGCTCGTGATTTCATAAGCCAGTGTTTGAGACCATATCCGGATGATAGACCTTCTGCATCCAAATTATTGGACCATCCTTTCGTGAATAGGTCAGTAAGGTCTATAATGTCTGTAATGACATCTTGA
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| Protein seq | NSEGVFFAVKEVYLDDQGKYDDAQQCIFQLQQEIALLSRLQHNNIVQYYGTDKEDSKLYVFLELMSQGSLASLYQKYRLRNSHVSRYTKQILNGLTYLHNRNIVHRDVKCGNILVHRNGSVKLADFGLAKQVSAFCWAESINKFSMLKSCEGSVYWMAPEVVNPKRTYGTAADIWSLGCTVLEMLTRQLPYPNLEWAQALFKIGRGEPPAIPKYLSKEARDFISQCLRPYPDDRPSASKLLDHPFVNRSVRSIMSVMTS |
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| Function | Mitogen-activated protein kinase kinase kinase 1 [UniProtKB/Swiss-Prot:Q39008] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_04G0249700 | OsZS97_04T0249700-mRNA-1 | Chr04 | 17122881 | 17125326 | - | makerRMon | ||
| CDS seq | AACAGCGAGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGTACTATGGTACAGACAAAGAGGACTCAAAACTTTACGTCTTCCTAGAACTAATGTCACAAGGCTCTCTTGCATCCTTGTACCAGAAATATCGCCTGCGAAATTCTCATGTTTCGCGATATACAAAACAAATCCTTAATGGGTTGACTTACCTCCACAACAGAAACATTGTTCATCGGGATGTGAAGTGTGGCAATATACTGGTGCATAGGAATGGATCTGTGAAACTTGCCGACTTTGGTCTTGCTAAGCAGGTCTCTGCTTTCTGCTGGGCAGAATCTATAAACAAATTCAGCATGCTTAAATCATGTGAAGGAAGTGTTTATTGGATGGCACCCGAGGTTGTCAATCCCAAGAGGACATATGGAACGGCAGCTGATATATGGAGTCTCGGTTGCACAGTCCTGGAGATGTTGACACGTCAACTGCCTTACCCAAATTTAGAATGGGCACAAGCTTTATTTAAGATCGGAAGGGGTGAACCACCAGCAATCCCAAAATACCTTTCAAAGGAGGCTCGTGATTTCATAAGCCAGTGTTTGAGACCATATCCGGATGATAGACCTTCTGCATCCAAATTATTGGACCATCCTTTCGTGAATAGGTCAGTAAGGTCTATAATGTCTGTAATGACATCTTGA
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| Protein seq | NSEGVFFAVKEVYLDDQGKYDDAQQCIFQLQQEIALLSRLQHNNIVQYYGTDKEDSKLYVFLELMSQGSLASLYQKYRLRNSHVSRYTKQILNGLTYLHNRNIVHRDVKCGNILVHRNGSVKLADFGLAKQVSAFCWAESINKFSMLKSCEGSVYWMAPEVVNPKRTYGTAADIWSLGCTVLEMLTRQLPYPNLEWAQALFKIGRGEPPAIPKYLSKEARDFISQCLRPYPDDRPSASKLLDHPFVNRSVRSIMSVMTS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_04G0249700 | OsZS97_04T0249700-mRNA-2 | Chr04 | 17122881 | 17125326 | - | makerRMon | ||
| CDS seq | AACAGCGAGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGTACTATGGTACAGACAAAGAGGACTCAAAACTTTACGTCTTCCTAGAACTAATGTCACAAGGCTCTCTTGCATCCTTGTACCAGAAATATCGCCTGCGAAATTCTCATGTTTCGCGATATACAAAACAAATCCTTAATGGGTTGACTTACCTCCACAACAGAAACATTGTTCATCGGGATGTGAAGTGTGGCAATATACTGGTGCATAGGAATGGATCTGTGAAACTTGCCGACTTTGGTCTTGCTAAGCAGGTTGTCAATCCCAAGAGGACATATGGAACGGCAGCTGATATATGGAGTCTCGGTTGCACAGTCCTGGAGATGTTGACACGTCAACTGCCTTACCCAAATTTAGAATGGGCACAAGCTTTATTTAAGATCGGAAGGGGTGAACCACCAGCAATCCCAAAATACCTTTCAAAGGAGGCTCGTGATTTCATAAGCCAGTGTTTGAGACCATATCCGGATGATAGACCTTCTGCATCCAAATTATTGGACCATCCTTTCGTGAATAGGTCAGTAAGGTCTATAATGTCTGTAATGACATCTTGA
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| Protein seq | NSEGVFFAVKEVYLDDQGKYDDAQQCIFQLQQEIALLSRLQHNNIVQYYGTDKEDSKLYVFLELMSQGSLASLYQKYRLRNSHVSRYTKQILNGLTYLHNRNIVHRDVKCGNILVHRNGSVKLADFGLAKQVVNPKRTYGTAADIWSLGCTVLEMLTRQLPYPNLEWAQALFKIGRGEPPAIPKYLSKEARDFISQCLRPYPDDRPSASKLLDHPFVNRSVRSIMSVMTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.7989055 | 5.6074675 | 2.4663665 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0339800 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47240 | RBH | 2.627278 | 1.867950 | 1.792481 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0339800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008730 | RBH | 0.000000 | 0.000000 | 1.289039 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009160 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008820 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0253300 | RBH | 0.150011 | 2.3715675 | 0.3389285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008120 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0145900 | SBH | 10.686834 | 79.662056 | 23.2518685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008270 | RBH | 0.0 | 0.0 | 0.0 |
