Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0339800 | OGI:04051520 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:16021939-16023733 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGATGTCATTACAGACATTATAGACCTTACTGACCTATTCACGAAAGGATGGTCCAATAATTTGGATGCAGAAGGTCTATCATCCGGATATGGTCTCAAACACTGGCTTATGAAATCACGAGCCTCCTTTGAAAGGTATTTTGGGATTGCTGGTGGTTCACCCCTTCCGATCTTAAATAAAGCTTGTGCCTGTAAAACAACAATTGAAGAAATAGTTGGACACATTTAATTGAACAAGAATTGAAGGAATAATTCAAGGGAATTGGATCATAGTGGACACATTTAATTTATCGAATTTTGACACATAATTTAATTCTACAGTGGAAAACAATTTTCCTGATGAAGAATAACTCACCCATTCTAAATTTGGGTAAGGCAGTTGACGTGTCAACATCTCCAGGACTGTGCAACCGAGACTCCATATATCAGCTGCCGTTCCATATGTCCTCTTGGGATTGACAACCTGAATGTTCAGTGTATAGATTTAAGCTGAATTAAGCGGCGTACTGCTGGTAAATTTCAGTACATGAGAACAAAACTCTACCTTTGCCATCATAGACAGTTTTTACTATTTGATATAATACTAGCTAGCCAGTTCTTAGCGTTTATTAACATTAAATTGTTGGATATATCCATGGCCACATTGTGCCAGCTGACTTTCACTTTCACCCAAGTCCACAATGTATATGTGCCGCTCATTTTTAGGATAATATTTCAGTACTTTTTATTCTGGACAAAACATCGAAGGAGGGGGAGAAAGCTATGGTGACAAAAAATCTTAGCATGTCCATTTTGTTATTTCTTTATTTTTTATAGAAAAAACTCATCGATCATGCATGGTGGTATACCTCGGGTGCCATCCAATAAACACTTCCTTCACATGATTTAAGCATGCTGAATTTGTTTATCTGAAAGAGATAACTAATAAATCAAGAGTAGAACAAAGTCAGTAACAAAGAACTGAAAGATCTAACACAAACATAAATACAGATTCTGCCCAGCAGAAAGCAGAGACCTGCTTAGCAAGACCAAAGTCGGCAAGTTTCACAGATCCATTCCTATGCACCAGTATATTGCCACACTTCACATCCCTACAAGAATTTTGAACATTGAAGTACATGAGTATATAATTAATATTTTATTCCTTTGCAAGACAAATTGAGAAATCTAGTGAGCAATTTATAATTAAGAAATCCCATTTATGCTACAAAATTACAGGTTGAAATTGCCTATGGTGCAAACAGACGTATGAATATTACCGATGAACAATGTTTCTGTTGTGGAGGTAAGTCAACCCATTAAGGATTTGTTTTGTATATCGCGAAACATGAGAATTTCGCAGGCGATATTTCTGGTACAAGGATGCAAGAGAGCCTTGTGACATTAGTTCTAGGAAGACGTAAAGTTTTGAGTCCTCCTGCAGTCGTCACACAATGGATGATCATATTAACCTTAAAAGAAATATGTATAAGAAAACCTATGAATTTATATACAACACAATAACACATATTACTTCAACAAATAGATGAACAACCACAAGATCCCCTAAAGGCAAAGATCACAAGATCGATCAGGAGCTTACTTTGTCTGTACCATAGTACTGTACAATGTTATTGTGTTGCAGACGACTCAGGAGTGCAATTTCCTGAACAGATTATTAGAAATTAGTAGATGCTTTATGATCTGAAAATACACCATTACCAACAGAAATATATATACTCCATATATTATCAACAAGAGAAGCATCTAGCGAAACCAACCTGCTGAAGCTGAAAAATACACTGTTGTGCAT
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| CDS seq | ATGCACAACAGTGTATTTTTCAGCTTCAGCAGGGATGTGAAGTGTGGCAATATACTGGTGCATAGGAATGGATCTGTGAAACTTGCCGACTTTGGTCTTGCTAAGCAGGTTGTCAATCCCAAGAGGACATATGGAACGGCAGCTGATATATGGAGTCTCGGTTGCACAGTCCTGGAGATGTTGACACGTCAACTGCCTTACCCAAATTTAGAATGGGCACAAGCTTTATTTAAGATCGGAAGGGGTGAACCACCAGCAATCCCAAAATACCTTTCAAAGGAGGCTCGTGATTTCATAAGCCAGTGTTTGAGACCATATCCGGATGATAGACCTTCTGCATCCAAATTATTGGACCATCCTTTCGTGAATAGGTCAGTAAGGTCTATAATGTCTGTAATGACATCTTGA
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| Protein seq | MHNSVFFSFSRDVKCGNILVHRNGSVKLADFGLAKQVVNPKRTYGTAADIWSLGCTVLEMLTRQLPYPNLEWAQALFKIGRGEPPAIPKYLSKEARDFISQCLRPYPDDRPSASKLLDHPFVNRSVRSIMSVMTS |
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| Function | Probable WRKY transcription factor 19 [UniProtKB/Swiss-Prot:Q9SZ67] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0339800 | Os04t0339800-00 | Chr04 | 16021939 | 16023733 | - | irgsp1_rep | ||
| CDS seq | ATGCACAACAGTGTATTTTTCAGCTTCAGCAGGGATGTGAAGTGTGGCAATATACTGGTGCATAGGAATGGATCTGTGAAACTTGCCGACTTTGGTCTTGCTAAGCAGGTTGTCAATCCCAAGAGGACATATGGAACGGCAGCTGATATATGGAGTCTCGGTTGCACAGTCCTGGAGATGTTGACACGTCAACTGCCTTACCCAAATTTAGAATGGGCACAAGCTTTATTTAAGATCGGAAGGGGTGAACCACCAGCAATCCCAAAATACCTTTCAAAGGAGGCTCGTGATTTCATAAGCCAGTGTTTGAGACCATATCCGGATGATAGACCTTCTGCATCCAAATTATTGGACCATCCTTTCGTGAATAGGTCAGTAAGGTCTATAATGTCTGTAATGACATCTTGA
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| Protein seq | MHNSVFFSFSRDVKCGNILVHRNGSVKLADFGLAKQVVNPKRTYGTAADIWSLGCTVLEMLTRQLPYPNLEWAQALFKIGRGEPPAIPKYLSKEARDFISQCLRPYPDDRPSASKLLDHPFVNRSVRSIMSVMTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0339800 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008730 | RBH | 0.000000 | 0.000000 | 1.289039 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009160 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008820 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0253300 | RBH | 0.150011 | 2.3715675 | 0.3389285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008120 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0249700 | RBH | 0.7989055 | 5.6074675 | 2.4663665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022220 | SBH | 0.874664 | 5.465657 | 5.709541 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022140 | SBH | 2.599961 | 20.358068 | 11.222113 |
