Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsZS97_01G0650400		OGI:01116750 \| 16/16			Zhenshan 97 \| ZS97RS3 \| HZAU			Chr01:41039118-41042932		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		DLN34, OsDLN34
DNA seq		AACTCGGGTAATTCAGGAGATTCGTTGCTCAGATCCATTTTTACAAGGAATAAGTCTACACCATTTTGATTCTACATCGTTACACGGATATGAAACAAAGGGCAAGTGAAATGGTGGCTACTGCAAATTGGGCACAAGCACCTGGAATGATAGTTCAGAGTTACTGCAAAGTTCAAACTCGCAGGTGTCGCCTTCACGCAGGTTGTTCTCCCTACTTATGTCAGCCCATCCAGCGATGAAACCGTTGAATTTTGGGGTGCATTGGTACAGCACAGGCCAGAATCTCATGGATGGATCCTTGAGTATTAATATCTTCCTCGCTTGTTTCTTTGTTCTTGGAAGAACTGGCAGTCGTCTTGGAAGCTCCTGTAAGTGCATCTTTTAGAAGTGCTGTGCATGCTCAGGAAATGCAAATATTTGTTTTTTCACAAGTGGTAGGACAAGAATCTAGACAAGGTATTAAACAGTTAATCTGTTGTGTTTTAGCTGAACTTTGGATATTCAACATTCATATTCTTTCAGATACCTATTCATTCATAATTTAGGGGGTGTTTGGATCCAGGGACTAAACTTTAGTCCCTGTCATATCGGATAAATTTGAAGTATTAAACATAGACTACTTATAAAACTAATTATATAAATGAGAGCTAATTCGTGTGACAAATTTTTTAAGCCTAATTAATCCATAATTAACGCATATTTACTGTAGCATCACATAGACTAATCATGGATTAATTAGACTCAATAGATTCGTCTCGCGAATTAGTTCAGGGTTATAGAATAGATTTTTATCAATAGTCTATGTTTAATATTTATAATTAGTGCCCCATCTAAACAGGGCCTTGCCCATGCTATCTCATAGCCCTGGCCTACTATCTCCAACTTCGGTGAACGATTAATATTAGTCACTTGTCGCTAAATATAATTTTTTTTAAGACAGGAACTGACAGAGACTGTTTCATCAGGATATTTTATGTCCTTTATGCAGTTTGAACACAAAAGACTTGGAAAAGGGAACAAGTTCAGTAAAGGCTACTCACAAGCCATGTTTGGTCTGGTGGAGGTATGGTTATGCAAAATTTCTTGCTATTTGCTGCAACTGCAAGAACTACACATGACTTTGTGCCTCCACTTTCCTGTCCTTTGCTATTGTTCCCTGCATATTGCCCGACACTCGTAAAATAACCTTTTATATAATCCATTTGTTAATTTGAACATTTCTTGAGAAAATACTCTTAAATCTAGTATAATATGCAGAATCACCAAAAAGGGCACCAGATAACTACTACTCCATCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTTATATGTCTATATGTTTAGATTCATTAACATTAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACGGAAGAAGTACCAGGTTGCACGCTATTTTTTCTGACGTAAGTAAGTTCACAAGTCTTTGGATCGCTTGACATAATTTCTGCAGCAATCTGCCGTGGACCATCTTTAGTGATATCTTGCTTCACAGAATAATGGGCTGGAACAGATACTGAATATTAATGATTTCTCATTGCTCAGTATAAGTTTGCAAATATACAAAATACATTGCAAATAAGGTTTCATAGGTACTAACCTTTTTGAGCAACTTTGTTGCACTCAGAATGCAAAACATCTTTATCCTTCTTGCAATCGTCTGGAGCTGCATCAATGTCAGGGTAAGTGTTGCCCTGTCCAATGTCAGGGCAAGTGTTACTGGGCAATGCGTTGATGTCTATGCCATGTACAGCAATGCTGCCATCATCTGTACTTGTTCTTGGTACATCAGTCATCTGTTTATTTTCCAAACATCTTGATGTCTCAGGCACTCCAAAACAATCACCTGGAGTTCGGCCATTGGCAACTAGCCCTTCGGTGTTCACGTCAACAGAAAATGCTTCTGGACTACAAAAATCACTATCAAATTCGTATATATCAGCTGACAGAAATATGTCATCTATACCCACTTCATTAAGATCCATCATAGCCAAAGGTGTTCTTAATTCTGCATTCTCTAGCACATTGGAGTTCTCGCAGTTCTCAGTTTCAGCATTCCCGTCTTCTAGCCCTAACTCGCAGTAAAGTTGCATTGGCCTATCTTGGTGTGAGCGTTCTGATTCTTTATCAGCAGTCATCACATTGCTTGATTCAGGATAACTAAAACTTGGGTAATCTTCAGATTTATTTGCATCCCATGTCACGTCTTTTGTGCTAGAAGATGCACCAATAGCTTCCAAATTTTTTATTGTCTTCATTCCAGCTGCATTGTAACTGGGATCAGCATTGCACTCTGTTGCAGGGACCTGAACAACTGCATGTGATTTATCAGGAGCTGCATCCAGTTCTTTCACTGAAGATTCTGAACATCTTAGCTCAGAACCAGAGTCGATGCAGACACGAACAGGCATGTCATGTTGCCTGGGGTCCAGATCATAAATCTGTTCATCGGTGCGTTGTTTCTTTCGACGTTTAACCACATCTTTGCTGCTTACTTTCACCATTTGATTGTCAGCAGGATAGCCTGTTTTTCGCCCGGGCTTCCTCTTCCGGCTCTGCCTCTTGTTCCTTTCACAGAGATGGATCCTTTCGCAAGCTGAAATTGCGAATATTTGCACGGTGAAGACTGACCTGGCGATCTGCCTGAACACCAGGAACTCGCCGACGCTGATGTCGTGATCGAGCACAAAGTTCTTCCACCCATGGCCAAATGACAGAACATCGTCGTGCAGATACAGCCGCACTCGCCAGCGAAGTCCATATGCATCTTCAAGATATACATTGGAGCCTGTCATGTCAGTGATTGTCCTGGCAAATGGGAGTGGTATATCCTGCATTTGTAAAAACATACATACACATATTATGTTCTTGCGTCAAGTAAGTTACTGCTGAATATAAATACTAAATCATAGTCAACACATTTTCACTAGTGGATCTTATTCACTAAATATACAATGTTTTTTTGACAGATCTCAGACATCCAGTTCATTGTCAAATGTGGCATAAAGTGCTTGCACCAACAGTCATACCTAGGACTTGCCTAAAATACACATGGTGCCTGTCTGAATAAGCAAAACTACACTGAATCATGCAAAAAAGATGGAAATCCATACCATGTTCTCGGAGAAGTAACCGACCATGATCTTGAAGAAGGACGGCAGCGTCGGGGTCGGCCTAGCCTTCTCGGAGGAGGAAGAAGCCATGCCATGAATTCGGATGCATCTCTTCGTGCAATCCACGCAGGCTTTCTTCCTCTGAGGGTCACTGACCCTCTTCCTCCTCCTCTTCACCTTCTCGGTTTTCTCCTCATGGACGACGTCAGCTTTCTCTTTTCCATGGCTGTCAGCATTGCCCTCTTCTTGCTCTATCTTCGGCACTTTTATCAGCTCCACCATGCTTGCTAGCTGATGTCTGAAAGTGATCTCAAAAGAACCCACGATGAAAGCAAGAAGCAGAGGAAACACAAGATGCAATATTTGCTAATTTGCTGAATAATGTCATCTTGAGATTATCAACCAAGGTATCAAGAACCATTTGCTTCCTCTGATCATTCCCTATCTCCCATAATTGAGCTGCCTATATATATTCAGACATGCAGACATCGCTCAGGCCTCAAACAGAAAAAAAGAGGTGATCATTTGACTTAACACTAAAATGATCAACAGAAAAGGAGACATGCAAGGAAAAAGGATCAAATTATTGCTGATTTCTTCTCCCACAACGGAGAGCAGAGCAGAAGAGAGAGACCAACGAAAGGTTACAGTGGTTACACAACAT More
CDS seq		ATGGTGGAGCTGATAAAAGTGCCGAAGATAGAGCAAGAAGAGGGCAATGCTGACAGCCATGGAAAAGAGAAAGCTGACGTCGTCCATGAGGAGAAAACCGAGAAGGTGAAGAGGAGGAGGAAGAGGGTCAGTGACCCTCAGAGGAAGAAAGCCTGCGTGGATTGCACGAAGAGATGCATCCGAATTCATGGCATGGCTTCTTCCTCCTCCGAGAAGGCTAGGCCGACCCCGACGCTGCCGTCCTTCTTCAAGATCATGGTCGGTTACTTCTCCGAGAACATGGATATACCACTCCCATTTGCCAGGACAATCACTGACATGACAGGCTCCAATGTATATCTTGAAGATGCATATGGACTTCGCTGGCGAGTGCGGCTGTATCTGCACGACGATGTTCTGTCATTTGGCCATGGGTGGAAGAACTTTGTGCTCGATCACGACATCAGCGTCGGCGAGTTCCTGGTGTTCAGGCAGATCGCCAGGTCAGTCTTCACCGTGCAAATATTCGCAATTTCAGCTTGCGAAAGGATCCATCTCTGTGAAAGGAACAAGAGGCAGAGCCGGAAGAGGAAGCCCGGGCGAAAAACAGGCTATCCTGCTGACAATCAAATGGTGAAAGTAAGCAGCAAAGATGTGGTTAAACGTCGAAAGAAACAACGCACCGATGAACAGATTTATGATCTGGACCCCAGGCAACATGACATGCCTGTTCGTGTCTGCATCGACTCTGGTTCTGAGCTAAGATGTTCAGAATCTTCAGTGAAAGAACTGGATGCAGCTCCTGATAAATCACATGCAGTTGTTCAGGTCCCTGCAACAGAGTGCAATGCTGATCCCAGTTACAATGCAGCTGGAATGAAGACAATAAAAAATTTGGAAGCTATTGGTGCATCTTCTAGCACAAAAGACGTGACATGGGATGCAAATAAATCTGAAGATTACCCAAGTTTTAGTTATCCTGAATCAAGCAATGTGATGACTGCTGATAAAGAATCAGAACGCTCACACCAAGATAGGCCAATGCAACTTTACTGCGAGTTAGGGCTAGAAGACGGGAATGCTGAAACTGAGAACTGCGAGAACTCCAATGTGCTAGAGAATGCAGAATTAAGAACACCTTTGGCTATGATGGATCTTAATGAAGTGGGTATAGATGACATATTTCTGTCAGCTGATATATACGAATTTGATAGTGATTTTTGTAGTCCAGAAGCATTTTCTGTTGACGTGAACACCGAAGGGCTAGTTGCCAATGGCCGAACTCCAGGTGATTGTTTTGGAGTGCCTGAGACATCAAGATGTTTGGAAAATAAACAGATGACTGATGTACCAAGAACAAGTACAGATGATGGCAGCATTGCTGTACATGGCATAGACATCAACGCATTGCCCAGTAACACTTGCCCTGACATTGGACAGGGCAACACTTACCCTGACATTGATGCAGCTCCAGACGATTGCAAGAAGGATAAAGATGTTTTGCATTCTGAGTGCAACAAAGTTGCTCAAAAAGCCCATTATTCTGTGAAGCAAGATATCACTAAAGATGGTCCACGGCAGATTGCTGCAGAAATTATGTCAAGCGATCCAAAGACTTGTGAACTTACTTACGTCAGAAAAAATAGCGTGCAACCTGGTACTTCTTCCGTTTCACAATGGAACAATAGCAAAGGACAGGAAAGTGGAGGCACAAAGTCATGTGTAGTTCTTGCAGTTGCAGCAAATAGCAAGAAATTTTGCATAACCATACCTCCACCAGACCAAACATGGCTTGAGCTTCCAAGACGACTGCCAGTTCTTCCAAGAACAAAGAAACAAGCGAGGAAGATATTAATACTCAAGGATCCATCCATGAGATTCTGGCCTGTGCTGTACCAATGCACCCCAAAATTCAACGGTTTCATCGCTGGATGGGCTGACATAAGTAGGGAGAACAACCTGCGTGAAGGCGACACCTGCGAGTTTGAACTTTGCAGTAACTCTGAACTATCATTCCAGGTGCTTGTGCCCAATTTGCAGTAG More
Protein seq		MVELIKVPKIEQEEGNADSHGKEKADVVHEEKTEKVKRRRKRVSDPQRKKACVDCTKRCIRIHGMASSSSEKARPTPTLPSFFKIMVGYFSENMDIPLPFARTITDMTGSNVYLEDAYGLRWRVRLYLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVFTVQIFAISACERIHLCERNKRQSRKRKPGRKTGYPADNQMVKVSSKDVVKRRKKQRTDEQIYDLDPRQHDMPVRVCIDSGSELRCSESSVKELDAAPDKSHAVVQVPATECNADPSYNAAGMKTIKNLEAIGASSSTKDVTWDANKSEDYPSFSYPESSNVMTADKESERSHQDRPMQLYCELGLEDGNAETENCENSNVLENAELRTPLAMMDLNEVGIDDIFLSADIYEFDSDFCSPEAFSVDVNTEGLVANGRTPGDCFGVPETSRCLENKQMTDVPRTSTDDGSIAVHGIDINALPSNTCPDIGQGNTYPDIDAAPDDCKKDKDVLHSECNKVAQKAHYSVKQDITKDGPRQIAAEIMSSDPKTCELTYVRKNSVQPGTSSVSQWNNSKGQESGGTKSCVVLAVAANSKKFCITIPPPDQTWLELPRRLPVLPRTKKQARKILILKDPSMRFWPVLYQCTPKFNGFIAGWADISRENNLREGDTCEFELCSNSELSFQVLVPNLQ
Function		B3 domain-containing protein Os01g0905400 [UniProtKB/Swiss-Prot:Q5N6V0]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_01G0650400	OsZS97_01T0650400.1	Chr01	41039118	41042932	-	makerRMon
CDS seq	ATGGTGGAGCTGATAAAAGTGCCGAAGATAGAGCAAGAAGAGGGCAATGCTGACAGCCATGGAAAAGAGAAAGCTGACGTCGTCCATGAGGAGAAAACCGAGAAGGTGAAGAGGAGGAGGAAGAGGGTCAGTGACCCTCAGAGGAAGAAAGCCTGCGTGGATTGCACGAAGAGATGCATCCGAATTCATGGCATGGCTTCTTCCTCCTCCGAGAAGGCTAGGCCGACCCCGACGCTGCCGTCCTTCTTCAAGATCATGGTCGGTTACTTCTCCGAGAACATGGATATACCACTCCCATTTGCCAGGACAATCACTGACATGACAGGCTCCAATGTATATCTTGAAGATGCATATGGACTTCGCTGGCGAGTGCGGCTGTATCTGCACGACGATGTTCTGTCATTTGGCCATGGGTGGAAGAACTTTGTGCTCGATCACGACATCAGCGTCGGCGAGTTCCTGGTGTTCAGGCAGATCGCCAGGTCAGTCTTCACCGTGCAAATATTCGCAATTTCAGCTTGCGAAAGGATCCATCTCTGTGAAAGGAACAAGAGGCAGAGCCGGAAGAGGAAGCCCGGGCGAAAAACAGGCTATCCTGCTGACAATCAAATGGTGAAAGTAAGCAGCAAAGATGTGGTTAAACGTCGAAAGAAACAACGCACCGATGAACAGATTTATGATCTGGACCCCAGGCAACATGACATGCCTGTTCGTGTCTGCATCGACTCTGGTTCTGAGCTAAGATGTTCAGAATCTTCAGTGAAAGAACTGGATGCAGCTCCTGATAAATCACATGCAGTTGTTCAGGTCCCTGCAACAGAGTGCAATGCTGATCCCAGTTACAATGCAGCTGGAATGAAGACAATAAAAAATTTGGAAGCTATTGGTGCATCTTCTAGCACAAAAGACGTGACATGGGATGCAAATAAATCTGAAGATTACCCAAGTTTTAGTTATCCTGAATCAAGCAATGTGATGACTGCTGATAAAGAATCAGAACGCTCACACCAAGATAGGCCAATGCAACTTTACTGCGAGTTAGGGCTAGAAGACGGGAATGCTGAAACTGAGAACTGCGAGAACTCCAATGTGCTAGAGAATGCAGAATTAAGAACACCTTTGGCTATGATGGATCTTAATGAAGTGGGTATAGATGACATATTTCTGTCAGCTGATATATACGAATTTGATAGTGATTTTTGTAGTCCAGAAGCATTTTCTGTTGACGTGAACACCGAAGGGCTAGTTGCCAATGGCCGAACTCCAGGTGATTGTTTTGGAGTGCCTGAGACATCAAGATGTTTGGAAAATAAACAGATGACTGATGTACCAAGAACAAGTACAGATGATGGCAGCATTGCTGTACATGGCATAGACATCAACGCATTGCCCAGTAACACTTGCCCTGACATTGGACAGGGCAACACTTACCCTGACATTGATGCAGCTCCAGACGATTGCAAGAAGGATAAAGATGTTTTGCATTCTGAGTGCAACAAAGTTGCTCAAAAAGCCCATTATTCTGTGAAGCAAGATATCACTAAAGATGGTCCACGGCAGATTGCTGCAGAAATTATGTCAAGCGATCCAAAGACTTGTGAACTTACTTACGTCAGAAAAAATAGCGTGCAACCTGGTACTTCTTCCGTTTCACAATGGAACAATAGCAAAGGACAGGAAAGTGGAGGCACAAAGTCATGTGTAGTTCTTGCAGTTGCAGCAAATAGCAAGAAATTTTGCATAACCATACCTCCACCAGACCAAACATGGCTTGAGCTTCCAAGACGACTGCCAGTTCTTCCAAGAACAAAGAAACAAGCGAGGAAGATATTAATACTCAAGGATCCATCCATGAGATTCTGGCCTGTGCTGTACCAATGCACCCCAAAATTCAACGGTTTCATCGCTGGATGGGCTGACATAAGTAGGGAGAACAACCTGCGTGAAGGCGACACCTGCGAGTTTGAACTTTGCAGTAACTCTGAACTATCATTCCAGGTGCTTGTGCCCAATTTGCAGTAG More
Protein seq	MVELIKVPKIEQEEGNADSHGKEKADVVHEEKTEKVKRRRKRVSDPQRKKACVDCTKRCIRIHGMASSSSEKARPTPTLPSFFKIMVGYFSENMDIPLPFARTITDMTGSNVYLEDAYGLRWRVRLYLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVFTVQIFAISACERIHLCERNKRQSRKRKPGRKTGYPADNQMVKVSSKDVVKRRKKQRTDEQIYDLDPRQHDMPVRVCIDSGSELRCSESSVKELDAAPDKSHAVVQVPATECNADPSYNAAGMKTIKNLEAIGASSSTKDVTWDANKSEDYPSFSYPESSNVMTADKESERSHQDRPMQLYCELGLEDGNAETENCENSNVLENAELRTPLAMMDLNEVGIDDIFLSADIYEFDSDFCSPEAFSVDVNTEGLVANGRTPGDCFGVPETSRCLENKQMTDVPRTSTDDGSIAVHGIDINALPSNTCPDIGQGNTYPDIDAAPDDCKKDKDVLHSECNKVAQKAHYSVKQDITKDGPRQIAAEIMSSDPKTCELTYVRKNSVQPGTSSVSQWNNSKGQESGGTKSCVVLAVAANSKKFCITIPPPDQTWLELPRRLPVLPRTKKQARKILILKDPSMRFWPVLYQCTPKFNGFIAGWADISRENNLREGDTCEFELCSNSELSFQVLVPNLQ More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.013576	0.0059665	0.2426195

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0905400	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g67830	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0905400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0044000	RBH	0.000000	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0043590	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0043930	RBH	0.0	0.000000	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0043410	RBH	0.0	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0042990	RBH	0.0	0.000000	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0649400	RBH	0.0122705	0.0405935	0.043253
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0042630	RBH	0.0	0.0	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0042960	RBH	0.000000	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0042920	RBH	0.0	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0043200	RBH	0.0	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0043180	RBH	0.000000	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0042970	RBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G043360	RBH	0.0	0.000000	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0043080	RBH	0.000000	0.0	0.000000

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.