Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os01g67830		OGI:01116750 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr01:39414801-39418617		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		DLN34, OsDLN34
DNA seq		TTAACTCGGGTAATTCAGGAGATTCGTTGCTCAGATCCATTTTTACAAGGAATAAGTCTACACCATTTTGATTCTACATCGTTACACGGATATGAAACAAAGGGCAAGTGAAATGGTGGCTACTGCAAATTGGGCACAAGCACCTGGAATGATAGTTCAGAGTTACTGCAAAGTTCAAACTCGCAGGTGTCGCCTTCACGCAGGTTGTTCTCCCTACTTATGTCAGCCCATCCAGCGATGAAACCGTTGAATTTTGGGGTGCATTGGTACAGCACAGGCCAGAGTCTCATGGATGGATCCTTGAGTATTAATATCTTCCTCGCTTGTTTCTTTGTTCTTGGAAGAACTGGCAGTCGTCTTGGAAGCTCCTGTAAGTGCATCTTTTAGAAGTGCTGTGCATGCTCAGGAAATGTAAATATTTGTTTTTTCACAAGTGGTAGGACAAGAATCTAGACAAGGTATTAAACAGTTAATCTGTTGTGTTTTAGCTGAACTTTGGATATTCAACATTCATATTCTTTCAGATACCTATTCATTCATAATTTAGGGGGTGTTTGGATCCAAGGACTAAACTTTAGTCCCTGTCATATCGGATGAATTTGAAGTATTAAACATAGACTACTTATAAAACTAATTACATAAATGAGAGCTAATTCGTGTGACAAATTTTTTAAGCCTAATTAATCCATAATTAACGTATATTTACTGTAGCATCACATAGGCTAATCATGGATTAATTAGACTCAATAGATTCGTCTCGCAAATTAGTTCAAGGTTATAGAATAGATTTTTATCAATATTCTATGTTTAATATTTATAATTAGTGCCCCGTCTAAACAGGGCCTTGCCCATGCTATCTCATAGCCCTGGCCTACTATCTCCAACTTCGGTGAACGATTAATATTAGTCACTTGTCGCTAAATATAATTTTTTTTAAGACAGGAACTGACAGAGACTGTTTCATCAGGATATTTTATGTCCTTTATGCAGTTTGAACACAAAAGACTTGGAAAAGGGAACAAGTTCAGTAAAGGCTACTCACAAGCCATGTTTGGTCTGGTGGAGGTATGGTTATGCAAAATTTCTTGCTATTTGCTGCAACTGCAAGAACTACACATGACTTTGTGCCTCCACTTTCCTGTCCTTTGCTATTGTTCCCTGCATATTGCCCGACACTCGTAAAATAACCTTTTATATAATCCATTTGTTAATTTGAACATTTCTTGAGAAAATACTCTTAAATCTAGTATAATATGCAGAATCACCAAAAAGGGCACCAGATAACTACTACTCCATCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTTATATGTCTATATGTATAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAAGAAATACCAGGTTGCACGCTATTTTTTCTGACGTAAGTAAGTTCACAAGTCTTTGGATCGCTTGACATAATTTCTGCAGCAATCTGCCGTGGACCATCTTTAGTGATATCTTGCTTCACAGAAGAATGGGCTGGAACAGATACTGAATATTAATGATTTCTCATTGCTCAGTATAAGTTTGCAAATATACAAAATACATTGCAAATAAGGTTTCATAGGTACTAACCTTTTTGAGCAACTTTGTTGCACTCAGAATGCAAAACATCTTTATCCTTCTTGCAATCGTCTGGAGCTGCATCAATGTCAGGGTAAGTGTTGCCCTGTCCAATGTCAGGGTAAGTGTTACTGGGCAATGCGTTGATGTCTATGCCATGTACAGCAATGCTGCCATCATCTGTACTTGTTCTTGGTACATCAGTCATCTGTTTATTTTCCAAACATCTTGATGTCTCAGGCACTCCAAAACAATCACCTGGAGTTCGGCCATTGGAAACTAGCCCTTCGGTGTTCACGTCAACAGAAAATGCTTCTGGACTACAAAAATCACTATCAAATTCGTATATATCAGCTGACAGAAATATGTCATCTATACCCACTTCATTAAGATCCATCATAGCCAAAGGTGTTCTTAATTCTGCATTCTCTAGCACATTGGAGTTCTCGCAGTTCTCAGTTTCAGCATTCCCGTCTTCTAGCCCTAACTCGCAGTAAAGTTGCATTGGCCTATCTTGGTGTGAGCGTTCTGATTCTTTATCAGCAGTCATCACATTGCTTGATTCAGGATAACTAAAACTTGGGTAATCTTCAGATTTATTTGCATCCCATGTCACGTCTTTTGTGCTAGAAGATGCACCAATAGCTTCCAAATTTTTTATTGTCTTCATTCCAGCTGCATTGTAACTGGGATCAGCATTGCACTCTGTTGCAGGGACCTGAACAACTGCATGTGATTTATCAGGAGCAGCATCCAGTTCTTTCACTGAAGATTCTGAACATCTTTGCTCAGAACCAGAGTCGATGCAGACACGAACAGGCATGTCATGTTGCCTGGGGTCCAGATCATATATCTGTTCATCGGTGCGTTGTTTCTTTCGACGTTTAACCACATCTTTGCTGCTTACTTTCACCATTTGATTGTTAGCAGGATAGCCTGTTTTTCGCCCGGGCTTCCTCTTCCGGCTCTGCCTCTTGTTCCTTTCACAGAGATGGATCCTTTCGCAAGCTGAAATTGCGAATATTTGCACGGTGAAGACTGACCTGGCGATCTGCCTGAACACCAGGAACTCGCCGACGCTGATGTCGTGATCGAGCACAAAGTTCTTCCACCCATGGCCAAATGACAGAACATCGTCGTGCAGATACAGCCGCACTCGCCAGCGAAGTCCATATGCATCTTCAAGATATACATTGGAGCCTGTCATGTCAGTGATTGTCCTGGCAAATGGGAGTGGTATATCCTGCATTTGTAAAAACATACATACACATATTATGTTCTTGCGTCAAGTAAGTTACTGCTGAATATAAATACTAAATCATAGTCAACACATTTTCACTAGTGGATCTTATTCACTAAATATACAATGTTTTTTTGACAGATCTCAGACATCCAGTTCATTGCCAAATGTGGCATAAAGTGCTTGCACCAACAGTCATACCTAGGACTTGCCTAAAATACACATGGTGCCTGTCTGAATAAGCAAAACTACACTGAATCATGCAAAAAAGATGGAAATCCATACCATGTTCTCGGAGAAGTAACCGACCATGATCTTGAAGAAGGACGGCAGCGTCGGGGTCGGCCTAGCCTTCTCGGAGGAGGAAGAAGCCATGCCATGAATTCGGATGCATCTCTTCGTGCAATCCACGCAGGCTTTCTTCCTCTGAGGGTCACTGACCCTCTTCCTCCTCCTCTTCACCTTCTCGGTTTTCTCCTCATGGACGACGTCAGCTTTCTCTTTTCCATGGCTGTCAGCATTGCCCTCTTCTTGCTCTATCTTCGGCACTTTTATCAGCTCCACCATGCTTGCTAGCTGATGTCTGAAAGTGATCTCAAAAGAACCAACGATGAAAGCAAGAAGCAGAGGAAACACAAGATGCAATATTTGCTAATTTGCTGAATAATGTCATCTTGAGATTATCAACCAAGGTATCAAGAACCATTTGCTTCCTCTGATCATTCCCTATCTCCCATAATTGAGCTGCCTATATATATTCAGACATGCAGACATCGCTCAGGCCTCAAACAGAAAAAAAGAGGTGATCATTTGACTTAACACTAAAATGATCAACAGAAAAGGAGACATGCAAGGAAAAAGGATCAAATTATTGCTGATTTCTTCTCCCACAACGGAGAGCAGAGCAGAAGAGAGAGACCAACGAAAGGTTACAGTGGTTACACAACAT More
CDS seq		ATGGTGGAGCTGATAAAAGTGCCGAAGATAGAGCAAGAAGAGGGCAATGCTGACAGCCATGGAAAAGAGAAAGCTGACGTCGTCCATGAGGAGAAAACCGAGAAGGTGAAGAGGAGGAGGAAGAGGGTCAGTGACCCTCAGAGGAAGAAAGCCTGCGTGGATTGCACGAAGAGATGCATCCGAATTCATGGCATGGCTTCTTCCTCCTCCGAGAAGGCTAGGCCGACCCCGACGCTGCCGTCCTTCTTCAAGATCATGGTCGGTTACTTCTCCGAGAACATGGATATACCACTCCCATTTGCCAGGACAATCACTGACATGACAGGCTCCAATGTATATCTTGAAGATGCATATGGACTTCGCTGGCGAGTGCGGCTGTATCTGCACGACGATGTTCTGTCATTTGGCCATGGGTGGAAGAACTTTGTGCTCGATCACGACATCAGCGTCGGCGAGTTCCTGGTGTTCAGGCAGATCGCCAGGTCAGTCTTCACCGTGCAAATATTCGCAATTTCAGCTTGCGAAAGGATCCATCTCTGTGAAAGGAACAAGAGGCAGAGCCGGAAGAGGAAGCCCGGGCGAAAAACAGGCTATCCTGCTAACAATCAAATGGTGAAAGTAAGCAGCAAAGATGTGGTTAAACGTCGAAAGAAACAACGCACCGATGAACAGATATATGATCTGGACCCCAGGCAACATGACATGCCTGTTCGTGTCTGCATCGACTCTGGTTCTGAGCAAAGATGTTCAGAATCTTCAGTGAAAGAACTGGATGCTGCTCCTGATAAATCACATGCAGTTGTTCAGGTCCCTGCAACAGAGTGCAATGCTGATCCCAGTTACAATGCAGCTGGAATGAAGACAATAAAAAATTTGGAAGCTATTGGTGCATCTTCTAGCACAAAAGACGTGACATGGGATGCAAATAAATCTGAAGATTACCCAAGTTTTAGTTATCCTGAATCAAGCAATGTGATGACTGCTGATAAAGAATCAGAACGCTCACACCAAGATAGGCCAATGCAACTTTACTGCGAGTTAGGGCTAGAAGACGGGAATGCTGAAACTGAGAACTGCGAGAACTCCAATGTGCTAGAGAATGCAGAATTAAGAACACCTTTGGCTATGATGGATCTTAATGAAGTGGGTATAGATGACATATTTCTGTCAGCTGATATATACGAATTTGATAGTGATTTTTGTAGTCCAGAAGCATTTTCTGTTGACGTGAACACCGAAGGGCTAGTTTCCAATGGCCGAACTCCAGGTGATTGTTTTGGAGTGCCTGAGACATCAAGATGTTTGGAAAATAAACAGATGACTGATGTACCAAGAACAAGTACAGATGATGGCAGCATTGCTGTACATGGCATAGACATCAACGCATTGCCCAGTAACACTTACCCTGACATTGGACAGGGCAACACTTACCCTGACATTGATGCAGCTCCAGACGATTGCAAGAAGGATAAAGATGTTTTGCATTCTGAGTGCAACAAAGTTGCTCAAAAAGCCCATTCTTCTGTGAAGCAAGATATCACTAAAGATGGTCCACGGCAGATTGCTGCAGAAATTATGTCAAGCGATCCAAAGACTTGTGAACTTACTTACGTCAGAAAAAATAGCGTGCAACCTGGTATTTCTTCCGTTTCACAATGGAACAATAGCAAAGGACAGGAAAGTGGAGGCACAAAGTCATGTGTAGTTCTTGCAGTTGCAGCAAATAGCAAGAAATTTTGCATAACCATACCTCCACCAGACCAAACATGGCTTGAGCTTCCAAGACGACTGCCAGTTCTTCCAAGAACAAAGAAACAAGCGAGGAAGATATTAATACTCAAGGATCCATCCATGAGACTCTGGCCTGTGCTGTACCAATGCACCCCAAAATTCAACGGTTTCATCGCTGGATGGGCTGACATAAGTAGGGAGAACAACCTGCGTGAAGGCGACACCTGCGAGTTTGAACTTTGCAGTAACTCTGAACTATCATTCCAGGTGCTTGTGCCCAATTTGCAGTAG More
Protein seq		MVELIKVPKIEQEEGNADSHGKEKADVVHEEKTEKVKRRRKRVSDPQRKKACVDCTKRCIRIHGMASSSSEKARPTPTLPSFFKIMVGYFSENMDIPLPFARTITDMTGSNVYLEDAYGLRWRVRLYLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVFTVQIFAISACERIHLCERNKRQSRKRKPGRKTGYPANNQMVKVSSKDVVKRRKKQRTDEQIYDLDPRQHDMPVRVCIDSGSEQRCSESSVKELDAAPDKSHAVVQVPATECNADPSYNAAGMKTIKNLEAIGASSSTKDVTWDANKSEDYPSFSYPESSNVMTADKESERSHQDRPMQLYCELGLEDGNAETENCENSNVLENAELRTPLAMMDLNEVGIDDIFLSADIYEFDSDFCSPEAFSVDVNTEGLVSNGRTPGDCFGVPETSRCLENKQMTDVPRTSTDDGSIAVHGIDINALPSNTYPDIGQGNTYPDIDAAPDDCKKDKDVLHSECNKVAQKAHSSVKQDITKDGPRQIAAEIMSSDPKTCELTYVRKNSVQPGISSVSQWNNSKGQESGGTKSCVVLAVAANSKKFCITIPPPDQTWLELPRRLPVLPRTKKQARKILILKDPSMRLWPVLYQCTPKFNGFIAGWADISRENNLREGDTCEFELCSNSELSFQVLVPNLQ
Function		B3 domain-containing protein Os01g0905400 [UniProtKB/Swiss-Prot:Q5N6V0]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os01g67830	LOC_Os01g67830.1	Chr01	39414801	39418617	-	MSU_osa1r7
CDS seq	ATGGTGGAGCTGATAAAAGTGCCGAAGATAGAGCAAGAAGAGGGCAATGCTGACAGCCATGGAAAAGAGAAAGCTGACGTCGTCCATGAGGAGAAAACCGAGAAGGTGAAGAGGAGGAGGAAGAGGGTCAGTGACCCTCAGAGGAAGAAAGCCTGCGTGGATTGCACGAAGAGATGCATCCGAATTCATGGCATGGCTTCTTCCTCCTCCGAGAAGGCTAGGCCGACCCCGACGCTGCCGTCCTTCTTCAAGATCATGGTCGGTTACTTCTCCGAGAACATGGATATACCACTCCCATTTGCCAGGACAATCACTGACATGACAGGCTCCAATGTATATCTTGAAGATGCATATGGACTTCGCTGGCGAGTGCGGCTGTATCTGCACGACGATGTTCTGTCATTTGGCCATGGGTGGAAGAACTTTGTGCTCGATCACGACATCAGCGTCGGCGAGTTCCTGGTGTTCAGGCAGATCGCCAGGTCAGTCTTCACCGTGCAAATATTCGCAATTTCAGCTTGCGAAAGGATCCATCTCTGTGAAAGGAACAAGAGGCAGAGCCGGAAGAGGAAGCCCGGGCGAAAAACAGGCTATCCTGCTAACAATCAAATGGTGAAAGTAAGCAGCAAAGATGTGGTTAAACGTCGAAAGAAACAACGCACCGATGAACAGATATATGATCTGGACCCCAGGCAACATGACATGCCTGTTCGTGTCTGCATCGACTCTGGTTCTGAGCAAAGATGTTCAGAATCTTCAGTGAAAGAACTGGATGCTGCTCCTGATAAATCACATGCAGTTGTTCAGGTCCCTGCAACAGAGTGCAATGCTGATCCCAGTTACAATGCAGCTGGAATGAAGACAATAAAAAATTTGGAAGCTATTGGTGCATCTTCTAGCACAAAAGACGTGACATGGGATGCAAATAAATCTGAAGATTACCCAAGTTTTAGTTATCCTGAATCAAGCAATGTGATGACTGCTGATAAAGAATCAGAACGCTCACACCAAGATAGGCCAATGCAACTTTACTGCGAGTTAGGGCTAGAAGACGGGAATGCTGAAACTGAGAACTGCGAGAACTCCAATGTGCTAGAGAATGCAGAATTAAGAACACCTTTGGCTATGATGGATCTTAATGAAGTGGGTATAGATGACATATTTCTGTCAGCTGATATATACGAATTTGATAGTGATTTTTGTAGTCCAGAAGCATTTTCTGTTGACGTGAACACCGAAGGGCTAGTTTCCAATGGCCGAACTCCAGGTGATTGTTTTGGAGTGCCTGAGACATCAAGATGTTTGGAAAATAAACAGATGACTGATGTACCAAGAACAAGTACAGATGATGGCAGCATTGCTGTACATGGCATAGACATCAACGCATTGCCCAGTAACACTTACCCTGACATTGGACAGGGCAACACTTACCCTGACATTGATGCAGCTCCAGACGATTGCAAGAAGGATAAAGATGTTTTGCATTCTGAGTGCAACAAAGTTGCTCAAAAAGCCCATTCTTCTGTGAAGCAAGATATCACTAAAGATGGTCCACGGCAGATTGCTGCAGAAATTATGTCAAGCGATCCAAAGACTTGTGAACTTACTTACGTCAGAAAAAATAGCGTGCAACCTGGTATTTCTTCCGTTTCACAATGGAACAATAGCAAAGGACAGGAAAGTGGAGGCACAAAGTCATGTGTAGTTCTTGCAGTTGCAGCAAATAGCAAGAAATTTTGCATAACCATACCTCCACCAGACCAAACATGGCTTGAGCTTCCAAGACGACTGCCAGTTCTTCCAAGAACAAAGAAACAAGCGAGGAAGATATTAATACTCAAGGATCCATCCATGAGACTCTGGCCTGTGCTGTACCAATGCACCCCAAAATTCAACGGTTTCATCGCTGGATGGGCTGACATAAGTAGGGAGAACAACCTGCGTGAAGGCGACACCTGCGAGTTTGAACTTTGCAGTAACTCTGAACTATCATTCCAGGTGCTTGTGCCCAATTTGCAGTAG More
Protein seq	MVELIKVPKIEQEEGNADSHGKEKADVVHEEKTEKVKRRRKRVSDPQRKKACVDCTKRCIRIHGMASSSSEKARPTPTLPSFFKIMVGYFSENMDIPLPFARTITDMTGSNVYLEDAYGLRWRVRLYLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVFTVQIFAISACERIHLCERNKRQSRKRKPGRKTGYPANNQMVKVSSKDVVKRRKKQRTDEQIYDLDPRQHDMPVRVCIDSGSEQRCSESSVKELDAAPDKSHAVVQVPATECNADPSYNAAGMKTIKNLEAIGASSSTKDVTWDANKSEDYPSFSYPESSNVMTADKESERSHQDRPMQLYCELGLEDGNAETENCENSNVLENAELRTPLAMMDLNEVGIDDIFLSADIYEFDSDFCSPEAFSVDVNTEGLVSNGRTPGDCFGVPETSRCLENKQMTDVPRTSTDDGSIAVHGIDINALPSNTYPDIGQGNTYPDIDAAPDDCKKDKDVLHSECNKVAQKAHSSVKQDITKDGPRQIAAEIMSSDPKTCELTYVRKNSVQPGISSVSQWNNSKGQESGGTKSCVVLAVAANSKKFCITIPPPDQTWLELPRRLPVLPRTKKQARKILILKDPSMRLWPVLYQCTPKFNGFIAGWADISRENNLREGDTCEFELCSNSELSFQVLVPNLQ More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0905400	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0905400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0044000	RBH	0.000000	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0043590	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0043930	RBH	0.0	0.000000	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0043410	RBH	0.0	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0042990	RBH	0.0	0.000000	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0649400	RBH	0.0122705	0.0405935	0.043253
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0042630	RBH	0.0	0.0	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0650400	RBH	0.013576	0.0059665	0.2426195
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0042960	RBH	0.000000	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0042920	RBH	0.0	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0043200	RBH	0.0	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0043180	RBH	0.000000	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0042970	RBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G043360	RBH	0.0	0.000000	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0043080	RBH	0.000000	0.0	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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