Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0043180 | OGI:01116750 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:41019814-41023099 | ||||||||
| Gene Symbol | DLN34, OsDLN34 | ||||||||||
| DNA seq | ctactgcaaattgggcacaagcacctggaatgatagttcagagttactgcaaagttcaaactcgcaggtgtcgccttcacgcaggttgttctccctacttatgtcagCccatccagcgatgaaaccgttgaattttggggtgcattggtacagcacaggccagagtctcatggatggatccttgagtattaatatcttcctcgcttgtttctttgttcttggaagaactggcagtcgtcttggaagctcctgtaagtgcatcttttagaagtgctgtgcatgctcaggaaatgcaaatatttgttttttcacaagtggtaggacaagaatctagacaaggtattaaacagttaatctgttgtgttttagctgaactttggatattcaacattcatattctttcagatacctactcattcataatttagggggtgtttggatccagggactaaactttaccctgtcatatcggatgaatttgaagtattaaacatagactacttataaaactaattacataaatgagagctaattcgtgtgacaaaTtttttaagcctaattaatccataattaacgcatatttactgtagcatcacataggctaatcatggattaattagactcaatagattcgtctcgcgaattagttcaggttatagaatagatttttatcaatagtctatgtttaatatttataattagtgccccatctaaacagggCcttgcccatgctatctcatagccctggcctactatctccaacttcggtgaacgattaatattagtcacttgtcgctaaatataatttttttaaagacaggaactgacagagactgtttcatcaggatattttatgtcctttatgcagtttgaacacaaaagacttggaaaagggaacaagctcagtaaaggctactcacaagccatgtttggtctggtggaggtatggttatgcaaaatttcttgctatttgctgcaactgcaagaactacacatgactttgtgcctccactttcctgtcctttgctattgttccctgcatattgcccgacactcgtaaaataaccTtttatataatccatttgTtaatttgaacatttcttgagaaaatactcttaaatctagtataatatgtagaatcaccAaaaagggcaccagataactactactccatccgTttcacaatgtaagtcattctagcatttCccacaTtaatatgtctatatgtctagattcattaacatcaatatgaatgtggaaaatgctagaatgacttacattgtgaaacggaggaagtaccaggttgcacgctattttttctgacgtaagtaagttcacaagtctttggaccgcttgacataatttctgcagcaatctgccgtggaccatctttagtgatatcttgcttcacagaagaaTGggctggaacagatactgaatattaatgatttctcattgctcagtataagtttgcaaatatacaaaatacattgcaaataaggtttcataggtactaacctttttgagcaactttgttgcactcagaatgcaaaaCAtctttatccttcttgcaatcgtctggagctgcatcaatgtcagggtaagtgttactgggcaatgcgttgatgtctatgccatgtacagcaatgctgccatcatctgtacttgttcttggtacatcagtcatctgtttattttccaaacatcttgatgtctcaggcactccaaaacaatcacctggagttcggccattggcaactagcccttcggtgttcacgtcaacagaaaatgcttcTggactacaaaaatcactatcaaattcgtatatatcagctgacagaaatatgtcatctatacccacttcattaagatccatcatagccaaaggtgttcttaattctgcattctctagcacattggagttctcgcagttctcagtttcagcattcccgtcttctagccctaactcgcagtaaagttgcattggcctatcttggtgtgagcgttctgattcTttatcagcagtcatcacattgcttgattcaggataactaaaacttgggtaatcttcagatttatttgcatcccatgtcacgtcttttgtgctagaagatgcaccaatagcttccaaattttttattgtcttcattccagctgcattgtaactgggatcagcattgcactctgttgcagggacctgaacaactgcatgtgatttatcaggagctgcatccagTtctttcactgaagattctgaacatcttagctcagaaccagagtcgatgcagacacgaacaggcatgtcatgttgcctggggtccagatcatagatctgttcatcggtgcgttgtttctttcgacgtttaaccacatctttgctgcttactttcaccatttgattgttagcaggatagcctgtttttcgcccgggcttcctcttccggctctgcctcttgttcctttcacagagatggatcctttcgcaagctgaaattgcgaatatttgcacggtgaagactgacctggcgatctgcctgaacaccaggaactcgccgacgctgatgtcgtgatcgagcacaaagttcttccacccatggccaaatgacagaacatcgtcgtgcagatacagccgcactcgccagcgaagtccatatgcatcttcaagatatacattggagcctgtcatgtcagtgattgtcctggcaaatgggagtggtatatcctgcatttgtaaaaacatacatacacatattatgttcttgcgtcaagtaagttactgctgaatataaatactaaatcatagtcaacacattttcactagTggatcttattcactaaatatacaatgtttttttgacagatctcagacatccagttcattgccaaatgtggcataaagtgcttgcaccaacagtcatacctaggacttgcctaaaatacacatggtgcctgtctgaataagcaaaactacactgaatcatgcaaaaaagatggaaatccataccatgttctcggagaagtaaccgaccatgatcttgaagaaggacggcagcgtcggggtcggcctagccttctcggaggaggaagaagccatgccatgaattcggatgcatctcttcgtgcaatccacgcaggctttcttcctctgagggtcactgaccctcttcctcctcctcttcaccttctcggTtttctcctcatggacgacgtcagctttctcTtttccatggctgtcagcattgccctcttcttgctctatcttcggcacttttatcagctccaccat
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| CDS seq | atggtggagctgataaaagtgccgaagatagagcaagaagagggcaatgctgacagccatggaaaAgagaaagctgacgtcgtccatgaggagaaaAccgagaaggtgaagaggaggaggaagagggtcagtgaccctcagaggaagaaagcctgcgtggattgcacgaagagatgcatccgaattcatggcatggcttcttcctcctccgagaaggctaggccgaccccgacgctgccgtccttcttcaagatcatggtcggttacttctccgagaacatggatataccactcccatttgccaggacaatcactgacatgacaggctccaatgtatatcttgaagatgcatatggacttcgctggcgagtgcggctgtatctgcacgacgatgttctgtcatttggccatgggtggaagaactttgtgctcgatcacgacatcagcgtcggcgagttcctggtgttcaggcagatcgccaggtcagtcttcaccgtgcaaatattcgcaatttcagcttgcgaaaggatccatctctgtgaaaggaacaagaggcagagccggaagaggaagcccgggcgaaaaacaggctatcctgctaacaatcaaatggtgaaagtaagcagcaaagatgtggttaaacgtcgaaagaaacaacgcaccgatgaacagatctatgatctggaccccaggcaacatgacatgcctgttcgtgtctgcatcgactctggttctgagctaagatgttcagaatcttcagtgaaagaActggatgcagctcctgataaatcacatgcagttgttcaggtccctgcaacagagtgcaatgctgatcccagttacaatgcagctggaatgaagacaataaaaaatttggaagctattggtgcatcttctagcacaaaagacgtgacatgggatgcaaataaatctgaagattacccaagttttagttatcctgaatcaagcaatgtgatgactgctgataaAgaatcagaacgctcacaccaagataggccaatgcaactttactgcgagttagggctagaagacgggaatgctgaaactgagaactgcgagaactccaatgtgctagagaatgcagaattaagaacacctttggctatgatggatcttaatgaagtgggtatagatgacatatttctgtcagctgatatatacgaatttgatagtgatttttgtagtccAgaagcattttctgttgacgtgaacaccgaagggctagttgccaatggccgaactccaggtgattgttttggagtgcctgagacatcaagatgtttggaaaataaacagatgactgatgtaccaagaacaagtacagatgatggcagcattgctgtacatggcatagacatcaacgcattgcccagtaacacttaccctgacattgatgcagctccagacgattgcaagaaggataaagaTGttttgcattctgagtgcaacaaagttgctcaaaaagggaacaatagcaaaggacaggaaagtggaggcacaaagtcatgtgtagttcttgcagttgcagcaaatagcaagaaattttgcataaccatacctccaccagaccaaacatggcttgagcttccaagacgactgccagttcttccaagaacaaagaaacaagcgaggaagatattaatactcaaggatccatccatgagactctggcctgtgctgtaccaatgcaccccaaaattcaacggtttcatcgctggatggGctgacataagtagggagaacaacctgcgtgaaggcgacacctgcgagtttgaactttgcagtaactctgaactatcattccaggtgcttgtgcccaatttgcagtag
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| Protein seq | MVELIKVPKIEQEEGNADSHGKEKADVVHEEKTEKVKRRRKRVSDPQRKKACVDCTKRCIRIHGMASSSSEKARPTPTLPSFFKIMVGYFSENMDIPLPFARTITDMTGSNVYLEDAYGLRWRVRLYLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVFTVQIFAISACERIHLCERNKRQSRKRKPGRKTGYPANNQMVKVSSKDVVKRRKKQRTDEQIYDLDPRQHDMPVRVCIDSGSELRCSESSVKELDAAPDKSHAVVQVPATECNADPSYNAAGMKTIKNLEAIGASSSTKDVTWDANKSEDYPSFSYPESSNVMTADKESERSHQDRPMQLYCELGLEDGNAETENCENSNVLENAELRTPLAMMDLNEVGIDDIFLSADIYEFDSDFCSPEAFSVDVNTEGLVANGRTPGDCFGVPETSRCLENKQMTDVPRTSTDDGSIAVHGIDINALPSNTYPDIDAAPDDCKKDKDVLHSECNKVAQKGNNSKGQESGGTKSCVVLAVAANSKKFCITIPPPDQTWLELPRRLPVLPRTKKQARKILILKDPSMRLWPVLYQCTPKFNGFIAGWADISRENNLREGDTCEFELCSNSELSFQVLVPNLQ |
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| Function | B3 domain-containing protein Os01g0905400 [UniProtKB/Swiss-Prot:Q5N6V0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0043180 | OsLiXu_01g0043180.01 | Chr01 | 41019814 | 41023099 | - | NAM | ||
| CDS seq | atggtggagctgataaaagtgccgaagatagagcaagaagagggcaatgctgacagccatggaaaAgagaaagctgacgtcgtccatgaggagaaaAccgagaaggtgaagaggaggaggaagagggtcagtgaccctcagaggaagaaagcctgcgtggattgcacgaagagatgcatccgaattcatggcatggcttcttcctcctccgagaaggctaggccgaccccgacgctgccgtccttcttcaagatcatggtcggttacttctccgagaacatggatataccactcccatttgccaggacaatcactgacatgacaggctccaatgtatatcttgaagatgcatatggacttcgctggcgagtgcggctgtatctgcacgacgatgttctgtcatttggccatgggtggaagaactttgtgctcgatcacgacatcagcgtcggcgagttcctggtgttcaggcagatcgccaggtcagtcttcaccgtgcaaatattcgcaatttcagcttgcgaaaggatccatctctgtgaaaggaacaagaggcagagccggaagaggaagcccgggcgaaaaacaggctatcctgctaacaatcaaatggtgaaagtaagcagcaaagatgtggttaaacgtcgaaagaaacaacgcaccgatgaacagatctatgatctggaccccaggcaacatgacatgcctgttcgtgtctgcatcgactctggttctgagctaagatgttcagaatcttcagtgaaagaActggatgcagctcctgataaatcacatgcagttgttcaggtccctgcaacagagtgcaatgctgatcccagttacaatgcagctggaatgaagacaataaaaaatttggaagctattggtgcatcttctagcacaaaagacgtgacatgggatgcaaataaatctgaagattacccaagttttagttatcctgaatcaagcaatgtgatgactgctgataaAgaatcagaacgctcacaccaagataggccaatgcaactttactgcgagttagggctagaagacgggaatgctgaaactgagaactgcgagaactccaatgtgctagagaatgcagaattaagaacacctttggctatgatggatcttaatgaagtgggtatagatgacatatttctgtcagctgatatatacgaatttgatagtgatttttgtagtccAgaagcattttctgttgacgtgaacaccgaagggctagttgccaatggccgaactccaggtgattgttttggagtgcctgagacatcaagatgtttggaaaataaacagatgactgatgtaccaagaacaagtacagatgatggcagcattgctgtacatggcatagacatcaacgcattgcccagtaacacttaccctgacattgatgcagctccagacgattgcaagaaggataaagaTGttttgcattctgagtgcaacaaagttgctcaaaaagggaacaatagcaaaggacaggaaagtggaggcacaaagtcatgtgtagttcttgcagttgcagcaaatagcaagaaattttgcataaccatacctccaccagaccaaacatggcttgagcttccaagacgactgccagttcttccaagaacaaagaaacaagcgaggaagatattaatactcaaggatccatccatgagactctggcctgtgctgtaccaatgcaccccaaaattcaacggtttcatcgctggatggGctgacataagtagggagaacaacctgcgtgaaggcgacacctgcgagtttgaactttgcagtaactctgaactatcattccaggtgcttgtgcccaatttgcagtag
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| Protein seq | MVELIKVPKIEQEEGNADSHGKEKADVVHEEKTEKVKRRRKRVSDPQRKKACVDCTKRCIRIHGMASSSSEKARPTPTLPSFFKIMVGYFSENMDIPLPFARTITDMTGSNVYLEDAYGLRWRVRLYLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVFTVQIFAISACERIHLCERNKRQSRKRKPGRKTGYPANNQMVKVSSKDVVKRRKKQRTDEQIYDLDPRQHDMPVRVCIDSGSELRCSESSVKELDAAPDKSHAVVQVPATECNADPSYNAAGMKTIKNLEAIGASSSTKDVTWDANKSEDYPSFSYPESSNVMTADKESERSHQDRPMQLYCELGLEDGNAETENCENSNVLENAELRTPLAMMDLNEVGIDDIFLSADIYEFDSDFCSPEAFSVDVNTEGLVANGRTPGDCFGVPETSRCLENKQMTDVPRTSTDDGSIAVHGIDINALPSNTYPDIDAAPDDCKKDKDVLHSECNKVAQKGNNSKGQESGGTKSCVVLAVAANSKKFCITIPPPDQTWLELPRRLPVLPRTKKQARKILILKDPSMRLWPVLYQCTPKFNGFIAGWADISRENNLREGDTCEFELCSNSELSFQVLVPNLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0905400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g67830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0905400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044000 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043590 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043930 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043410 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042990 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0649400 | RBH | 0.0122705 | 0.0405935 | 0.043253 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042630 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0650400 | RBH | 0.013576 | 0.0059665 | 0.2426195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042960 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042920 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043200 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042970 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043360 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043080 | RBH | 0.000000 | 0.0 | 0.000000 |
