Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0423000 | OGI:01079470 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:27373018-27373476 | ||||||||
| Gene Symbol | Ubi1, - | ||||||||||
| DNA seq | ATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATTGACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGGCGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAGGCCGGATCCGTGCTCCTCCACGATCGTCCTTGCTCTCAGGGGCTAGAGATGACTCGTTAG
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| CDS seq | ATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATTGACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGGCGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAGGCCGGATCCGTGCTCCTCCACGATCGTCCTTGCTCTCAGGGGCTAGAGATGACTCGTTAG
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| Protein seq | MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRRGMNDIKVKMLTGKEIDVDIEPTDTMGRIKERIDEREGRLVYGGKQLADDKTVHEYDIEAGSVLLHDRPCSQGLEMTR |
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| Function | Ubiquitin-like protein-NEDD8-like protein RUB3 [UniProtKB/Swiss-Prot:P0C032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0423000 | OsZS97_01T0423000.1 | Chr01 | 27373018 | 27373476 | + | makerRMon | ||
| CDS seq | ATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATTGACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGGCGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAGGCCGGATCCGTGCTCCTCCACGATCGTCCTTGCTCTCAGGGGCTAGAGATGACTCGTTAG
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| Protein seq | MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRRGMNDIKVKMLTGKEIDVDIEPTDTMGRIKERIDEREGRLVYGGKQLADDKTVHEYDIEAGSVLLHDRPCSQGLEMTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0628100 | SBH | 18.763294 | 19.687611 | 56.471085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0628100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004771 | SBH | 23.611549 | 747.267395 | 279.629150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026080 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004741 | SBH | 152.594208 | 376.591431 | 476.852570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0433800 | RBH | 0.030438 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026001 | SBH | 8.491142 | 14.054948 | 25.362541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0396200 | SBH | 43.5979045 | 116.170555 | 106.664093 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026240 | SBH | 0.000000 | 0.0 | 0.547671 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
