Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g45420 | OGI:01079470 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:25771592-25772050 | ||||||||
| Gene Symbol | Ubi1 | ||||||||||
| DNA seq | ATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATTGACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGGCGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAGGCCGGATCCGTGCTCCTCCACGATCGTCCTTGCTCTCAGGGGCTAGAGATGACTCGTTAG
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| CDS seq | ATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATTGACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGGCGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAGGCCGGATCCGTGCTCCTCCACGATCGTCCTTGCTCTCAGGGGCTAGAGATGACTCGTTAG
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| Protein seq | MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRRGMNDIKVKMLTGKEIDVDIEPTDTMGRIKERIDEREGRLVYGGKQLADDKTVHEYDIEAGSVLLHDRPCSQGLEMTR |
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| Function | Ubiquitin-like protein-NEDD8-like protein RUB3 [UniProtKB/Swiss-Prot:P0C032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g45420 | LOC_Os01g45420.1 | Chr01 | 25771592 | 25772050 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATTGACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGGCGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAGGCCGGATCCGTGCTCCTCCACGATCGTCCTTGCTCTCAGGGGCTAGAGATGACTCGTTAG
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| Protein seq | MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRRGMNDIKVKMLTGKEIDVDIEPTDTMGRIKERIDEREGRLVYGGKQLADDKTVHEYDIEAGSVLLHDRPCSQGLEMTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0161900 | SBH | 65.930634 | 54.397705 | 170.432510 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06640 | SBH | 7.120409 | 33.603981 | 5.857125 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0681400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032560 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032060 | SBH | 0.000000 | 3.487525 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032530 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031770 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031490 | SBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0433800 | RBH | 0.030438 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031200 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0423000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031440 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031490 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031670 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031840 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031620 | SBH | 0.274067 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032050 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031720 | SBH | 0.551594 | 11.830093 | 0.000000 |
