Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0023580 | OGI:11077870 | 1/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:30208667-30210232 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaaccatactggtttctttgattggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtagaagaagaacttagaaaactgcagaaaagaatgaaacaaatacagtgctttatcagtgatgctgagcgaaggggcatagaagattcagcagtacacaattgggtttcttggctaaaagatgctatgtatgacgctgatgacattatcgatttggctagttttgaaggaagcaagctattaaatggccattcttcttcaccaagaaaaacaactgcatgcagtgggctttcacttctctcgtgcttttccaatattcgggttcaccatgagattggtgataaaattagaagcctgaaccgaaaattagaggaaatagtaaaggatagaatatttgcaacacttgagaatacacaaccagctgataaaggttcaacatcagaacgaagaaaaacatctcacattgttgaacccaaccttgtggggaaagatatattaaaagcttctagagatttggtgaggcaggtgcttacacacaaggaaaagaaggcttacaagcttgctattgttggaacaggggggatcggaaagacaacacttgctcagaaagtattcaatgatcagaaattaaaaggaagcttcagcaaacatgcatggatctgtgtttctcaggactactccccggcctctgttttgagacaactacttagaatcatcgaggttcaacacagacaagaagaatcagttggcgagctccaaagcaagcttgaattggctattaaagataagagttattttcttgtgttggatgatgtatggcagtctgatgtatggaccaatctactacgaattccactatatgcagcaacctcaggaataattttgataactactcggcaagatattgtcgctagagaaattggggttgaggaaccccatcgtgtcgacttaatgtcaccagctgttggttgggagctactctggaagagcattaacattgaggacgagaaagaagtgcaaaatctgcgagacacagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttattgctagagttttagcaagcaaagataaaacggagaacgaatggagaaggattttagctaataacatttggtccacggctaaacttcctaaggaaataagaggtgctctgtatctgagctatgatgatttaccatagcatttaaagcaatgctttctttattgtattgtatatcctgaagactggaccattcaccgtgattaccttatcaggatgtgggttgccgaaggctttgtagaagtgcacaaagatcgattactagaagatacagcagaagaatactactatgagctaataaataggaatctcctccaaccacttgtcggatcttttgataagagtatatgcaaaatgcatgatctcttaaggcaacttgcttgttatatatcaagagaagaatgttatattggagatccaacatcattggtggataataacatgtgtaaactgtga
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| CDS seq | atggcaaccatactggtttctttgattggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtagaagaagaacttagaaaactgcagaaaagaatgaaacaaatacagtgctttatcagtgatgctgagcgaaggggcatagaagattcagcagtacacaattgggtttcttggctaaaagatgctatgtatgacgctgatgacattatcgatttggctagttttgaaggaagcaagctattaaatggccattcttcttcaccaagaaaaacaactgcatgcagtgggctttcacttctctcgtgcttttccaatattcgggttcaccatgagattggtgataaaattagaagcctgaaccgaaaattagaggaaatagtaaaggatagaatatttgcaacacttgagaatacacaaccagctgataaaggttcaacatcagaacgaagaaaaacatctcacattgttgaacccaaccttgtggggaaagatatattaaaagcttctagagatttggtgaggcaggtgcttacacacaaggaaaagaaggcttacaagcttgctattgttggaacaggggggatcggaaagacaacacttgctcagaaagtattcaatgatcagaaattaaaaggaagcttcagcaaacatgcatggatctgtgtttctcaggactactccccggcctctgttttgagacaactacttagaatcatcgaggttcaacacagacaagaagaatcagttggcgagctccaaagcaagcttgaattggctattaaagataagagttattttcttgtgttggatgatgtatggcagtctgatgtatggaccaatctactacgaattccactatatgcagcaacctcaggaataattttgataactactcggcaagatattgtcgctagagaaattggggttgaggaaccccatcgtgtcgacttaatgtcaccagctgttggttgggagctactctggaagagcattaacattgaggacgagaaagaagtgcaaaatctgcgagacacagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttattgctagagttttagcaagcaaagataaaacggagaacgaatggagaaggattttagctaataacatttggtccacggctaaacttcctaaggaaataagagactggaccattcaccgtgattaccttatcaggatgtgggttgccgaaggctttgtagaagtgcacaaagatcgattactagaagatacagcagaagaatactactatgagctaataaataggaatctcctccaaccacttgtcggatcttttgataagagtatatgcaaaatgcatgatctcttaaggcaacttgcttgttatatatcaagagaagaatgttatattggagatccaacatcattggtggataataacatgtgtaaactgtga
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| Protein seq | MATILVSLIGSCVNKLQGIITEEAILILGVEEELRKLQKRMKQIQCFISDAERRGIEDSAVHNWVSWLKDAMYDADDIIDLASFEGSKLLNGHSSSPRKTTACSGLSLLSCFSNIRVHHEIGDKIRSLNRKLEEIVKDRIFATLENTQPADKGSTSERRKTSHIVEPNLVGKDILKASRDLVRQVLTHKEKKAYKLAIVGTGGIGKTTLAQKVFNDQKLKGSFSKHAWICVSQDYSPASVLRQLLRIIEVQHRQEESVGELQSKLELAIKDKSYFLVLDDVWQSDVWTNLLRIPLYAATSGIILITTRQDIVAREIGVEEPHRVDLMSPAVGWELLWKSINIEDEKEVQNLRDTGIEIVQKCGGLPLAIKVIARVLASKDKTENEWRRILANNIWSTAKLPKEIRDWTIHRDYLIRMWVAEGFVEVHKDRLLEDTAEEYYYELINRNLLQPLVGSFDKSICKMHDLLRQLACYISREECYIGDPTSLVDNNMCKL |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0023580 | OsPr106_11g0023580.01 | Chr11 | 30208667 | 30210232 | + | NAM | ||
| CDS seq | atggcaaccatactggtttctttgattggatcatgcgtaaacaagttgcaagggatcattacagaggaggcaatactaattttaggtgtagaagaagaacttagaaaactgcagaaaagaatgaaacaaatacagtgctttatcagtgatgctgagcgaaggggcatagaagattcagcagtacacaattgggtttcttggctaaaagatgctatgtatgacgctgatgacattatcgatttggctagttttgaaggaagcaagctattaaatggccattcttcttcaccaagaaaaacaactgcatgcagtgggctttcacttctctcgtgcttttccaatattcgggttcaccatgagattggtgataaaattagaagcctgaaccgaaaattagaggaaatagtaaaggatagaatatttgcaacacttgagaatacacaaccagctgataaaggttcaacatcagaacgaagaaaaacatctcacattgttgaacccaaccttgtggggaaagatatattaaaagcttctagagatttggtgaggcaggtgcttacacacaaggaaaagaaggcttacaagcttgctattgttggaacaggggggatcggaaagacaacacttgctcagaaagtattcaatgatcagaaattaaaaggaagcttcagcaaacatgcatggatctgtgtttctcaggactactccccggcctctgttttgagacaactacttagaatcatcgaggttcaacacagacaagaagaatcagttggcgagctccaaagcaagcttgaattggctattaaagataagagttattttcttgtgttggatgatgtatggcagtctgatgtatggaccaatctactacgaattccactatatgcagcaacctcaggaataattttgataactactcggcaagatattgtcgctagagaaattggggttgaggaaccccatcgtgtcgacttaatgtcaccagctgttggttgggagctactctggaagagcattaacattgaggacgagaaagaagtgcaaaatctgcgagacacagggattgagattgttcagaaatgtggtgggctacctcttgcaatcaaggttattgctagagttttagcaagcaaagataaaacggagaacgaatggagaaggattttagctaataacatttggtccacggctaaacttcctaaggaaataagagactggaccattcaccgtgattaccttatcaggatgtgggttgccgaaggctttgtagaagtgcacaaagatcgattactagaagatacagcagaagaatactactatgagctaataaataggaatctcctccaaccacttgtcggatcttttgataagagtatatgcaaaatgcatgatctcttaaggcaacttgcttgttatatatcaagagaagaatgttatattggagatccaacatcattggtggataataacatgtgtaaactgtga
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| Protein seq | MATILVSLIGSCVNKLQGIITEEAILILGVEEELRKLQKRMKQIQCFISDAERRGIEDSAVHNWVSWLKDAMYDADDIIDLASFEGSKLLNGHSSSPRKTTACSGLSLLSCFSNIRVHHEIGDKIRSLNRKLEEIVKDRIFATLENTQPADKGSTSERRKTSHIVEPNLVGKDILKASRDLVRQVLTHKEKKAYKLAIVGTGGIGKTTLAQKVFNDQKLKGSFSKHAWICVSQDYSPASVLRQLLRIIEVQHRQEESVGELQSKLELAIKDKSYFLVLDDVWQSDVWTNLLRIPLYAATSGIILITTRQDIVAREIGVEEPHRVDLMSPAVGWELLWKSINIEDEKEVQNLRDTGIEIVQKCGGLPLAIKVIARVLASKDKTENEWRRILANNIWSTAKLPKEIRDWTIHRDYLIRMWVAEGFVEVHKDRLLEDTAEEYYYELINRNLLQPLVGSFDKSICKMHDLLRQLACYISREECYIGDPTSLVDNNMCKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.512981 | 0.000000 | 1.517319 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676800 | SBH | 0.0 | 0.000000 | 1.008491 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45090 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023770 | SBH | 0.136767 | 3.948730 | 1.835728 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023490 | SBH | 0.379576 | 4.742776 | 2.006162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023140 | SBH | 2.762746 | 13.436707 | 26.538805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023140 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023510 | SBH | 0.000000 | 0.279106 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0420800 | SBH | 0.2352695 | 1.2420205 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024070 | SBH | 0.147908 | 0.045435 | 1.028058 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0430400 | SBH | 0.0795115 | 0.861657 | 0.3468515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023840 | SBH | 1.203734 | 0.746390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023790 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022990 | SBH | 1.870009 | 0.0 | 3.727034 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023040 | SBH | 0.160837 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023300 | SBH | 0.434635 | 0.913598 | 2.277780 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023730 | SBH | 1.486182 | 20.188963 | 5.723283 |
