Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0020260 | OGI:11069000 | 14/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:26494784-26496485 | ||||||||
| Gene Symbol | Os11gRGA4, - | ||||||||||
| DNA seq | tcacttcctcgagccggagcagatgctcgatgccagagatggcaccgagtcgacagaagagctgaagtgactcgagacgtggcatggccttctgctcaacgacaatatttggcagctctggaacaacaaagcacaggcgcttcagattcacgaaatcttcaccctgccagataaatccttctgctggaagctcgaatgcatcctcaatcagtttgagatattgcaagtattgtaagcgtttcagctgcgagagaacatcccagccaagattagtccccgataagcacaattctctgatgtagtctgaccgaatgaacgatgggaatttggtcaagttgccgcgtagcttgaggaaacgtagaagacatggagatggaggacatggagcttctagtttgtgcaggaagtctaggctgccaaaagtgacgaaatcgatcgagagagaaagaaggggtactttcagctctgaggtaccctttttaaaataatccttgagaaagactagaagatcatcagtgtccgtgctgctgggagcactactccggcacgagattttgactttactcaatgtaggcataagaggcaagattttgacaaaacctgggctttcatcgatgaagaatcctgccaacgtctgcagcctacaggtattctttgagaagaacttctgcccgttgttaaaatcattattcttgccggttatctggaactggcccaacaggtttattaactgggggagctcgaggacttgcatgggcagtatgcgtactttggtgccccttgtgtctagtgtctccaaacgcttcagattcacaatcttcggtggaagtttggtcacgccttcattgttcctgatgctaatatatctgagtaattctgacttgcaaatagtttcaagatcaatgtcctgtaagttactgcaattttctagttccaatactcttaggtatgtatagtttctgaagtccatgagaacgttacttgcccttccggaaaatgtgagtgaccggacataagataaaccatccttctttccttgcttgggaggcttagaactgttattatggagatagagtcgattgattctctgcccatattctattctcctgacatcattatgaacataaatccaagtgacaaatttctcagactgcgctctgtgctttataaactctagcatcattcgatgaactcgaaatgtcttcacctgtccactgatgccaacatcaattggcagaatgatgttatggtcaatcaaatcagcaaagcactcgtttgctacttcctcagcttgaccgtctgtaactactattaacctttcggctaaccatcttcttatcagactcttcctcttgatgacatgacccttgggatatgtgcttagcgacaacaagcaggtcatggtatgatgatttagactcttgcagcttcgggtaagtacatgattcagtcctgcgaatgattctcccttcttactgaccaaaagggaatgaaaattcttgcaagcttcttcacatttgtcaatattccactcttcagcgcttttaatataagtagccatattaactagagcaagaggcaaatactcgcacatcttcaggatcttatccaaaccgctgctgatgttggaagggcaagcatccccaccaaaagcttttcgtgtaagtaaatttagggcatggcacttgccaagtggctgcat
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| CDS seq | atgcagccacttggcaagtgccatgccctaaatttacttacacgaaaagcttttggtggggatgcttgcccttccaacatcagcagcggtttggataagatcctgaagatgtgcgagtatttgcctcttgctctagttaatatggctacttatattaaaagcgctgaagagtggaatattgacaaatgtgaagaagcttgcaagaattttcattcccttttggtcagtaagaagggagaatcattcgcaggactgaatcatgtacttacccgaagctgcaagagtctaaatcatcataccatgacctgcttgttgtcgctaagcacatatcccaagggtcatgtcatcaagaggaagagtctgataagaagatggttagccgaaaggttaatagtagttacagacggtcaagctgaggaagtagcaaacgagtgctttgctgatttgattgaccataacatcattctgccaattgatgttggcatcagtggacaggtgaagacatttcgagttcatcgaatgatgctagagtttataaagcacagagcgcagtctgagaaatttgtcacttggatttatgttcataatgatgtcaggagaatagaatatgggcagagaatcaatcgactctatctccataataacagttctaagcctcccaagcaaggaaagaaggatggtttatcttatgtccggtcactcacattttccggaagggcaagtaacgttctcatggacttcagaaactatacatacctaagagtattggaactagaaaattgcagtaacttacaggacattgatcttgaaactatttgcaagtcagaattactcagatatattagcatcaggaacaatgaaggcgtgaccaaacttccaccgaagattgtgaatctgaagcgtttggagacactagacacaaggggcaccaaagtacgcatactgcccatgcaagtcctcgagctcccccagttaataaacctgttgggccagttccagataaccggcaagaataatgattttaacaacgggcagaagttcttctcaaagaatacctgtaggctgcagacgttggcaggattcttcatcgatgaaagcccaggttttgtcaaaatcttgcctcttatgcctacattgagtaaagtcaaaatctcgtgccggagtagtgctcccagcagcacggacactgatgatcttctagtctttctcaaggattattttaaaaagggtacctcagagctgaaagtaccccttctttctctctcgatcgatttcgtcacttttggcagcctagacttcctgcacaaactagaagctccatgtcctccatctccatgtcttctacgtttcctcaagctacgcggcaacttgaccaaattcccatcgttcattcggtcagactacatcagagaattgtgcttatcggggactaatcttggctgggatgttctctcgcagctgaaacgcttacaatacttgcaatatctcaaactgattgaggatgcattcgagcttccagcagaaggatttatctggcagggtgaagatttcagctgccaaatattgtcgttgagcagaaggccatgccacgtctcgagtcacttcagctcttctgtcgactcggtgccatctctggcatcgagcatctgctccggctcgaggaagtga
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| Protein seq | MQPLGKCHALNLLTRKAFGGDACPSNISSGLDKILKMCEYLPLALVNMATYIKSAEEWNIDKCEEACKNFHSLLVSKKGESFAGLNHVLTRSCKSLNHHTMTCLLSLSTYPKGHVIKRKSLIRRWLAERLIVVTDGQAEEVANECFADLIDHNIILPIDVGISGQVKTFRVHRMMLEFIKHRAQSEKFVTWIYVHNDVRRIEYGQRINRLYLHNNSSKPPKQGKKDGLSYVRSLTFSGRASNVLMDFRNYTYLRVLELENCSNLQDIDLETICKSELLRYISIRNNEGVTKLPPKIVNLKRLETLDTRGTKVRILPMQVLELPQLINLLGQFQITGKNNDFNNGQKFFSKNTCRLQTLAGFFIDESPGFVKILPLMPTLSKVKISCRSSAPSSTDTDDLLVFLKDYFKKGTSELKVPLLSLSIDFVTFGSLDFLHKLEAPCPPSPCLLRFLKLRGNLTKFPSFIRSDYIRELCLSGTNLGWDVLSQLKRLQYLQYLKLIEDAFELPAEGFIWQGEDFSCQILSLSRRPCHVSSHFSSSVDSVPSLASSICSGSRK |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0020260 | OsPr106_11g0020260.01 | Chr11 | 26494784 | 26496485 | - | NAM | ||
| CDS seq | atgcagccacttggcaagtgccatgccctaaatttacttacacgaaaagcttttggtggggatgcttgcccttccaacatcagcagcggtttggataagatcctgaagatgtgcgagtatttgcctcttgctctagttaatatggctacttatattaaaagcgctgaagagtggaatattgacaaatgtgaagaagcttgcaagaattttcattcccttttggtcagtaagaagggagaatcattcgcaggactgaatcatgtacttacccgaagctgcaagagtctaaatcatcataccatgacctgcttgttgtcgctaagcacatatcccaagggtcatgtcatcaagaggaagagtctgataagaagatggttagccgaaaggttaatagtagttacagacggtcaagctgaggaagtagcaaacgagtgctttgctgatttgattgaccataacatcattctgccaattgatgttggcatcagtggacaggtgaagacatttcgagttcatcgaatgatgctagagtttataaagcacagagcgcagtctgagaaatttgtcacttggatttatgttcataatgatgtcaggagaatagaatatgggcagagaatcaatcgactctatctccataataacagttctaagcctcccaagcaaggaaagaaggatggtttatcttatgtccggtcactcacattttccggaagggcaagtaacgttctcatggacttcagaaactatacatacctaagagtattggaactagaaaattgcagtaacttacaggacattgatcttgaaactatttgcaagtcagaattactcagatatattagcatcaggaacaatgaaggcgtgaccaaacttccaccgaagattgtgaatctgaagcgtttggagacactagacacaaggggcaccaaagtacgcatactgcccatgcaagtcctcgagctcccccagttaataaacctgttgggccagttccagataaccggcaagaataatgattttaacaacgggcagaagttcttctcaaagaatacctgtaggctgcagacgttggcaggattcttcatcgatgaaagcccaggttttgtcaaaatcttgcctcttatgcctacattgagtaaagtcaaaatctcgtgccggagtagtgctcccagcagcacggacactgatgatcttctagtctttctcaaggattattttaaaaagggtacctcagagctgaaagtaccccttctttctctctcgatcgatttcgtcacttttggcagcctagacttcctgcacaaactagaagctccatgtcctccatctccatgtcttctacgtttcctcaagctacgcggcaacttgaccaaattcccatcgttcattcggtcagactacatcagagaattgtgcttatcggggactaatcttggctgggatgttctctcgcagctgaaacgcttacaatacttgcaatatctcaaactgattgaggatgcattcgagcttccagcagaaggatttatctggcagggtgaagatttcagctgccaaatattgtcgttgagcagaaggccatgccacgtctcgagtcacttcagctcttctgtcgactcggtgccatctctggcatcgagcatctgctccggctcgaggaagtga
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| Protein seq | MQPLGKCHALNLLTRKAFGGDACPSNISSGLDKILKMCEYLPLALVNMATYIKSAEEWNIDKCEEACKNFHSLLVSKKGESFAGLNHVLTRSCKSLNHHTMTCLLSLSTYPKGHVIKRKSLIRRWLAERLIVVTDGQAEEVANECFADLIDHNIILPIDVGISGQVKTFRVHRMMLEFIKHRAQSEKFVTWIYVHNDVRRIEYGQRINRLYLHNNSSKPPKQGKKDGLSYVRSLTFSGRASNVLMDFRNYTYLRVLELENCSNLQDIDLETICKSELLRYISIRNNEGVTKLPPKIVNLKRLETLDTRGTKVRILPMQVLELPQLINLLGQFQITGKNNDFNNGQKFFSKNTCRLQTLAGFFIDESPGFVKILPLMPTLSKVKISCRSSAPSSTDTDDLLVFLKDYFKKGTSELKVPLLSLSIDFVTFGSLDFLHKLEAPCPPSPCLLRFLKLRGNLTKFPSFIRSDYIRELCLSGTNLGWDVLSQLKRLQYLQYLKLIEDAFELPAEGFIWQGEDFSCQILSLSRRPCHVSSHFSSSVDSVPSLASSICSGSRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.757051 | 12.876848 | 2.690805 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0225100 | SBH | 0.515996 | 0.357768 | 1.940268 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39160 | SBH | 0.092575 | 0.0 | 0.128549 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0225100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007950 | SBH | 0.586948 | 13.903722 | 3.891642 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020430 | RBH | 0.000000 | 0.000000 | 0.216234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020220 | RBH | 0.419872 | 7.487573 | 1.379724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019770 | RBH | 0.024207 | 0.165895 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019900 | RBH | 6.415038 | 11.786870 | 15.003955 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0361400 | RBH | 0.0049915 | 0.014131 | 0.009293 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020760 | RBH | 0.000000 | 0.286431 | 0.174274 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0378900 | RBH | 0.843081 | 5.1298875 | 1.930497 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020570 | RBH | 0.056242 | 0.081841 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020020 | RBH | 0.093852 | 0.0 | 0.077884 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020130 | RBH | 0.056184 | 5.394116 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020100 | RBH | 0.0 | 0.910739 | 0.294774 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022230 | SBH | 1.925611 | 32.285851 | 14.891186 |
