Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_11G020100 | OGI:11069000 | 14/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr11:25577096-25578986 | ||||||||
| Gene Symbol | Os11gRGA4 | ||||||||||
| DNA seq | ACCTTGAAATTCAATCACTGCGCTCGTTGGTCCTTTGAATTCTTGTGCTTCTTGTCAAAACGTGCCGAGATGATGGTGGGGACGGCGACTTTGTCTTCTTCACCACGAATTTTGGTCTCGTTGGATGTGCCTCAACTTGCCCCTTCAAATATTTTACCGATTGATCACCACAAAAATTGGAAGTGACAATCACTTCCTCGAGCCGGAGCAGATGCTCGATGCCAGAGATGGCACCGAGTCGACAGAAGAGCTGAAGTGACTCGAGACGTGGCATGGCCTTCTGCTCAACGACAATATTTGGCAGCTCTGGAACAACAAAGCACAGGCGCTTCAGATTCACGAAATCTTCACCCTGCCAGATAAATCCTTCTGCTGGAAGCTCGAATGCATCCTCAATCAGTTTGAGATATTGCAAGTATTGTAAGCGTTTCAGCTGCGAGAGAACATCCCAGCCAAGATTAGTCCCCGATAAGCACAATTCTCTGATGTAGTCTGACCGATTGAACGATGGGAATTTGGTCAAGTTGCCGCGTAGCTTGAGGAAACGTAGAAGACATGGAGATGGAGGACATGGAGCTTCTAGTTTGTGCAGGAAGTCTAGGCTGCCAAAAGTGACGAAATCGATCGAGAGAGAAAGAAGGGGTACTTTCAGCTCTGAGGTACCCTTTTTAAAATAATCCTTGAGAAAGACTAGAAGATCATCAGTGTCCGTGCTGCTGGGAGCACTACTCCGGCACGAGATTTTGACTTTACTCAATGTAGGCATAAGAGGCAAGATTTTGACAAAACCTGGGCTTTCATCGATGAAGAATCCTGCCAACGTCTGCAGCCTACAGGTATTCTTTGAGAAGAACTTCTGCCCGTTGTTAAAATCATTATTCTTGCCGGTTATCTGGAACTGGCCCAACAGGTTTATTAACTGGGGGAGCTCGAGGACTTGCATGGGCAGTATGCGTACTTTGGTGCCCCTTGTGTCTAGTGTCTCCAAACGCTTCAGATTCACAATCTTCGGTGGAAGTTTGGTCACGCCTTCATTGTTCCTGATGCTAATATATCTGAGTAATTCTGACTTGCAAATAGTTTCAAGATCAATGTCCTGTAAGTTACTGCAATTTTCTAGTTCCAATACTCTTAGGTATGTATAGTTTCTGAAGTCCATGAGAACTTTACTTGCCCTTCCGGAAAATGTGAGTGACCGGACATAAGATAAACCATCCTTCTTTCCTTGCTTGGGAGGCTTAGAACTGTTATTATGGAGATAGAGTCGATTGATTCTCTGCCCATATTCTATTCCCCTGACATCATTATGAACATAAATCCAAGTGACAAATTTCTCAGACTGCGCTCTGTGCTTTATAAACTCTAGCATCATTCGATGAACTCGAAATGTCTTCACCTGTCCACTGATGCCAACATCAATTGGCAGAATGATGTTATGGTCAATCAAATCAGCAAAGCACTCGTTTGCTACTTCCTCAGCTTGACCGTCTGTAACTACTATTAACCTTTCGGCTAACCATCTTCTTATCAGACTCTTCCTCTTGATGACATGACCCTTGGGATATGTGCTTAGCGACAACAAGCAGGTCATGGTATGATGATTTAGACTCTTGCAGCTTCGGGTAAGTACATGATTCAGTCCTGCGAATGATTCTCCCTTCTTACTGACCAAAAGGGAATGAAAATTCTTGCAAGCTTCTTCACATTTGTCAATATTCCACTCTTCAGCGCTTTTAATATAAGTAGCCATATTAACTAGAGCAAGAGGCAAATACTCGCACATCTCCAGGATCTTATCCAAACCGCTGCTGATGTTGGAAGGGCAAGCATCCCCACCAAAAGCTTTTCGTGTAAGTAAATTTAGGGCATGGCACTTGCGAAGTGGCTGCAT
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| CDS seq | ATGCAGCCACTTCGCAAGTGCCATGCCCTAAATTTACTTACACGAAAAGCTTTTGGTGGGGATGCTTGCCCTTCCAACATCAGCAGCGGTTTGGATAAGATCCTGGAGATGTGCGAGTATTTGCCTCTTGCTCTAGTTAATATGGCTACTTATATTAAAAGCGCTGAAGAGTGGAATATTGACAAATGTGAAGAAGCTTGCAAGAATTTTCATTCCCTTTTGCTGAAACGCTTACAATACTTGCAATATCTCAAACTGATTGAGGATGCATTCGAGCTTCCAGCAGAAGGATTTATCTGGCAGGGTGAAGATTTCGTGAATCTGAAGCGCCTGTGCTTTGTTGTTCCAGAGCTGCCAAATATTGTCGTTGAGCAGAAGGCCATGCCACGTCTCGAGTCACTTCAGCTCTTCTGTCGACTCGGTGCCATCTCTGGCATCGAGCATCTGCTCCGGCTCGAGGAAGTGATTGTCACTTCCAATTTTTGTGGTGATCAATCGGTAAAATATTTGAAGGGGCAAGTTGAGGCACATCCAACGAGACCAAAATTCGTGGTGAAGAAGACAAAGTCGCCGTCCCCACCATCATCTCGGCACGTTTTGACAAGAAGCACAAGAATTCAAAGGACCAACGAGCGCAGTGATTGA
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| Protein seq | MQPLRKCHALNLLTRKAFGGDACPSNISSGLDKILEMCEYLPLALVNMATYIKSAEEWNIDKCEEACKNFHSLLLKRLQYLQYLKLIEDAFELPAEGFIWQGEDFVNLKRLCFVVPELPNIVVEQKAMPRLESLQLFCRLGAISGIEHLLRLEEVIVTSNFCGDQSVKYLKGQVEAHPTRPKFVVKKTKSPSPPSSRHVLTRSTRIQRTNERSD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_11G020100 | OsN22_11G020100_01 | Chr11 | 25577096 | 25578986 | - | NAM | ||
| CDS seq | ATGCAGCCACTTCGCAAGTGCCATGCCCTAAATTTACTTACACGAAAAGCTTTTGGTGGGGATGCTTGCCCTTCCAACATCAGCAGCGGTTTGGATAAGATCCTGGAGATGTGCGAGTATTTGCCTCTTGCTCTAGTTAATATGGCTACTTATATTAAAAGCGCTGAAGAGTGGAATATTGACAAATGTGAAGAAGCTTGCAAGAATTTTCATTCCCTTTTGCTGAAACGCTTACAATACTTGCAATATCTCAAACTGATTGAGGATGCATTCGAGCTTCCAGCAGAAGGATTTATCTGGCAGGGTGAAGATTTCGTGAATCTGAAGCGCCTGTGCTTTGTTGTTCCAGAGCTGCCAAATATTGTCGTTGAGCAGAAGGCCATGCCACGTCTCGAGTCACTTCAGCTCTTCTGTCGACTCGGTGCCATCTCTGGCATCGAGCATCTGCTCCGGCTCGAGGAAGTGATTGTCACTTCCAATTTTTGTGGTGATCAATCGGTAAAATATTTGAAGGGGCAAGTTGAGGCACATCCAACGAGACCAAAATTCGTGGTGAAGAAGACAAAGTCGCCGTCCCCACCATCATCTCGGCACGTTTTGACAAGAAGCACAAGAATTCAAAGGACCAACGAGCGCAGTGATTGA
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| Protein seq | MQPLRKCHALNLLTRKAFGGDACPSNISSGLDKILEMCEYLPLALVNMATYIKSAEEWNIDKCEEACKNFHSLLLKRLQYLQYLKLIEDAFELPAEGFIWQGEDFVNLKRLCFVVPELPNIVVEQKAMPRLESLQLFCRLGAISGIEHLLRLEEVIVTSNFCGDQSVKYLKGQVEAHPTRPKFVVKKTKSPSPPSSRHVLTRSTRIQRTNERSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.910739 | 0.294774 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024410 | SBH | 0.0 | 15.163236 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020430 | SBH | 0.000000 | 0.000000 | 0.216234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020220 | SBH | 0.419872 | 7.487573 | 1.379724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019770 | SBH | 0.024207 | 0.165895 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020260 | RBH | 1.757051 | 12.876848 | 2.690805 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0361400 | SBH | 0.0049915 | 0.014131 | 0.009293 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020760 | SBH | 0.000000 | 0.286431 | 0.174274 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0378900 | SBH | 0.843081 | 5.1298875 | 1.930497 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020570 | SBH | 0.056242 | 0.081841 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020720 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020020 | SBH | 0.093852 | 0.0 | 0.077884 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020130 | SBH | 0.056184 | 5.394116 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020060 | SBH | 3.612054 | 26.399912 | 10.200569 |
