Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_08g0013830 | OGI:08050930 | 11/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr08:18670021-18673820 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaggctcaagcaagcaaatcgcctccccaatcttgggtgcctgaagggtatgtgtccattttccccctccggtttggcaatgaatttttttgcatacatggtaggatgcacttatttttttggcatgcattttggataggatggatcctggtacagcatatctgttgaaaatcaggctccatgggcaccagagtagagaaaactttacatttagaacagaggaagtgatagatagcgacagaacaaacttcaaggattttattgatcacattagagagaagtacccatggggggtgaatgaatttgtaacagtgaactactttgatccagtaaacagaaactaccctcaagtatgctcagaccagtcaatgctagaaatgtttgacaagaatatgactagcaaggaaatatctatgttgattcaaattcatacgaacaatgagcaagctgtagttctgccacttgctgattgaccaacacctaaaaaggtagttagtggggcagaacctaatgcagctaatatacatgaggtgccatgtactccatctcttgcagtgccatctcaggctactatatctcagcctagcagcagcacacaaccagttgttgatatgtacttggaaaatttatttgaacaaaatgaacatgtcggtgttgacgataaggatatgtattcagatgatgaaattgttgtggctgtcactaatgctgggcaagagaaagagcctactgatgtgcctgaggtggacagtgaggaaagggatgaggttgaggttgaggtagaggaggggggggaggagggggaggaggaggaaggggatgaggagtgggtggaggaggaggaggatgaggagggggaggaggaggaggaaggggaggaggagtgggtggtgaagatgctattcctgttaaagatccagaggtggcatatgatagtaatgatccaccgatgacaaaaaatagtgtgtatgaaaacattgtgcaattcagattggcaatagctcagcatgctattaaacatgaattcgagtataacattgttaagactgacctagggaggttcattgccaagtgtgctgctgagggatgtgggtggagaattcatgcctcaactatgcaagacggtgttacaatgcaagttataacttaatttctactgttttttcaataggtttcatagttttgcagttgctaatgaaacaatgtttttgttcttttgttgttttgccaggtgaagaccaatagtgtgcctcactcttgttcaagtgcaagaagaagtgaaaagatcaaacctgcaagtaaggcttggatatgtgAaaaggttaaggattggttgttagaggatgcaaccgtgggagcaaaagaattgcaaagaaggatccttgaaactcacaaagttctgattaactacaagagggtatatgctgggaaggaattggctcttgaaaagttgtatggtaaatgggaggacagttttgaaaaattgtacagttacaaggcaataattgaaagagaatgccctggaagccttgttgtaattgatcaccacacagtgctgaataagttgagattcagaagactattctttgcactaaaaccttgcatagatggttttcgagatggttgcaggccatatgtagcaatagatagcacttttttgactggcatgttcaagggacagctaacaactgcttgtgctgttgatgggcataactggatgtacccagtagcctttggagtgatggactcagagaccaatgaaaactggaaatggttcatggaaagacttagggatgctattggtaatccagaaggtctcacaatttgtacagatgcagggaaaggagtagatactacagtacatgacatttttcgtgatgcagaacatagagaatgcatgccacatttggtgaataatttcaaaaagaggtttcatggaaaggtgtttgatgataacctctagcctgcagcatactcatataatccatattttttctagaagcacattgagaaaatggatgaagcaaagctagaggctatggcttatttaaggaaaaaccatgttaggctttggactagaagccaattctctgggcaatgcaaggttgattatgttacaaataatttggctgaatatttcaatagctggatcaggccacataaaggattgcacttggtggatttcatggataagattaggcacaagttaatggtgaagtggaacaggagaagatcaatttcAaaaaagctagaagggaatatactaccacacattatgaatgaattgaatgaaaagagcaggggtttgaaccatgaggttacaagaagtgatgatgcattagcagaggtggagtgcaagggaggaagtggccacaggttagtttttttatgttcattgcaacttaattgccaagtttgtgcacttcctaagtataccatgtttgttcttttgttctggtggtaagtttgttgtcaatcttacagataggacatgtagctgtagagagtggcaggtttcaggcaaaccatgcacacatgctatagcttttatcacatccatccgaggctgcaaaattgaggattttgtagatgagtgctactctgttagtaggttccaaatggcttattcaaaagtaatccctcctttggttgacaaatctcaatggcccaatcctacccatgacttcttgcatccaccggttctcaaaaaggtagcaggcaggccaaaaaggacaagatatagtggttgtagtgaaaagggcaacccaggaggagttaacaagggcaagcataagtgcctgttgtgtaagggttatggtcatcattggcatagttgcagagagggtgatcctgctgattaccaagcaatgctagctgaaaggtaacctttttaattgataataatgtgatatattttctgtttaccctcattctaaattctgttatacaacctactactcgtttgcaggggacctccAaaaaaaaggcaaaagtctagtaatgcacatgctgaaactagcattgtacatgttcctagcgcatcttctgctcaaaatgcaatattgtctgcaacaatgacatatccaccaagcaaaagttgtcaaaccgggaaaaaaggacaggacctcagtaatacttcatcagggtcagttaggtatattagttccatctaccattgcaataatgacttcctcatatgcttacattttcctttaccatttatgtcaatgtcagatcaaggtcagtgacaggatccaaccaacctgaacctttgagtgtgttgatgccactagcagcgcctggagagaactctaaggccaaggctaagacaaagaccaaagctaaagccaagatagctcctaggaagaatacaaaggatagcgctgctactatgcctttggcacaagtcaaacaaaaaggcaaccccattcctgtgtctcctgatagtccagccatgagtacaaggagcaaaaagaaatttctaaattttaattagggatcctttttaattaacatgtgctcacatattttggtactgtgatctctggttgcacggtacttatgcagtactccagttaatctagcgttttggtactatggtgctgatgcattttagtcatgtatatggtgatggtactgtatgtggtgagatggcacttctatggcactgcaagacatgcatatgtgatggtactgtatgtggcacttaatggtagtgatgcattttggggttgtatgcaaatctgtgatgagagatgatgcactgtatgtgctgatttcaacatttatgtcatgac
More
|
||||||||||
| CDS seq | atgaaggctcaagcaagcaaatcgcctccccaatcttgggtgcctgaagggatggatcctggtacagcatatctgttgaaaatcaggctccatgggcaccagagtagagaaaactttacatttagaacagaggaagtgatagatagcgacagaacaaacttcaaggattttattgatcacattagagagaagtacccatggggggtgaatgaatttgtaacagtgaactactttgatccagtaaacagaaactaccctcaagtatgctcagaccagtcaatgctagaaatgtttgacaagaatatgactagcaaggaaatatctatgttgattcaaattcatacgaacaatgagcaagctgtagttagtggggcagaacctaatgcagctaatatacatgaggtgccatgtactccatctcttgcagtgccatctcaggctactatatctcagcctagcagcagcacacaaccagttgttgatatgtacttggaaaatttatttgaacaaaatgaacatgtcggtgttgacgataaggatatgtattcagatgatgaaattgttgtggctgtcactaatgctgggcaagagaaagagcctactgatgtgcctgaggtggacagtgaggaaagggatgaggttgaggttgaggtagaggaggggggggaggagggggaggaggaggaaggggatgaggaatcaaggtcagtgacaggatccaaccaacctgaacctttgagtgtgttgatgccactagcagcgcctggagagaactctaaggccaaggctaagacaaagaccaaagctaaagccaagatagctcctaggaagaatacaaaggatagcgctgctactatgcctttggcacaagtcaaacaaaaaggcaaccccattcctgtgtctcctgatagtccagccatgagtacaaggagcaaaaagaaatttctaaattttaattag
More
|
||||||||||
| Protein seq | MKAQASKSPPQSWVPEGMDPGTAYLLKIRLHGHQSRENFTFRTEEVIDSDRTNFKDFIDHIREKYPWGVNEFVTVNYFDPVNRNYPQVCSDQSMLEMFDKNMTSKEISMLIQIHTNNEQAVVSGAEPNAANIHEVPCTPSLAVPSQATISQPSSSTQPVVDMYLENLFEQNEHVGVDDKDMYSDDEIVVAVTNAGQEKEPTDVPEVDSEERDEVEVEVEEGGEEGEEEEGDEESRSVTGSNQPEPLSVLMPLAAPGENSKAKAKTKTKAKAKIAPRKNTKDSAATMPLAQVKQKGNPIPVSPDSPAMSTRSKKKFLNFN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0013830 | OsPr106_08g0013830.01 | Chr08 | 18670021 | 18673820 | + | NAM | ||
| CDS seq | atgaaggctcaagcaagcaaatcgcctccccaatcttgggtgcctgaagggatggatcctggtacagcatatctgttgaaaatcaggctccatgggcaccagagtagagaaaactttacatttagaacagaggaagtgatagatagcgacagaacaaacttcaaggattttattgatcacattagagagaagtacccatggggggtgaatgaatttgtaacagtgaactactttgatccagtaaacagaaactaccctcaagtatgctcagaccagtcaatgctagaaatgtttgacaagaatatgactagcaaggaaatatctatgttgattcaaattcatacgaacaatgagcaagctgtagttagtggggcagaacctaatgcagctaatatacatgaggtgccatgtactccatctcttgcagtgccatctcaggctactatatctcagcctagcagcagcacacaaccagttgttgatatgtacttggaaaatttatttgaacaaaatgaacatgtcggtgttgacgataaggatatgtattcagatgatgaaattgttgtggctgtcactaatgctgggcaagagaaagagcctactgatgtgcctgaggtggacagtgaggaaagggatgaggttgaggttgaggtagaggaggggggggaggagggggaggaggaggaaggggatgaggaatcaaggtcagtgacaggatccaaccaacctgaacctttgagtgtgttgatgccactagcagcgcctggagagaactctaaggccaaggctaagacaaagaccaaagctaaagccaagatagctcctaggaagaatacaaaggatagcgctgctactatgcctttggcacaagtcaaacaaaaaggcaaccccattcctgtgtctcctgatagtccagccatgagtacaaggagcaaaaagaaatttctaaattttaattag
More
|
|||||||
| Protein seq | MKAQASKSPPQSWVPEGMDPGTAYLLKIRLHGHQSRENFTFRTEEVIDSDRTNFKDFIDHIREKYPWGVNEFVTVNYFDPVNRNYPQVCSDQSMLEMFDKNMTSKEISMLIQIHTNNEQAVVSGAEPNAANIHEVPCTPSLAVPSQATISQPSSSTQPVVDMYLENLFEQNEHVGVDDKDMYSDDEIVVAVTNAGQEKEPTDVPEVDSEERDEVEVEVEEGGEEGEEEEGDEESRSVTGSNQPEPLSVLMPLAAPGENSKAKAKTKTKAKAKIAPRKNTKDSAATMPLAQVKQKGNPIPVSPDSPAMSTRSKKKFLNFN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.654829 | 0.000000 | 5.280419 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31790 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018010 | SBH | 0.461190 | 4.752254 | 7.703535 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018800 | SBH | 0.105869 | 2.078447 | 1.705326 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018500 | SBH | 1.566154 | 2.216166 | 5.492369 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018220 | SBH | 0.121216 | 0.097660 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0272700 | RBH | 2.028101 | 4.263183 | 7.320749 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013880 | RBH | 0.000000 | 0.0 | 0.395891 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0297300 | RBH | 2.5677945 | 9.028287 | 10.413849 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013380 | RBH | 0.182694 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013450 | RBH | 0.187978 | 6.373499 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0069310 | RBH | 0.337240 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013500 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015090 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013660 | RBH | 0.0 | 0.0 | 0.0 |
