Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0018800 | OGI:04074280 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:23108946-23112566 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatcctggtaaagcatatctgttgaaaatcaggctccatgggcaccaaagtagagaaaactttacatttagaacagaggaagtgatagatagcgacagaacaaacttcaaggattttattgatcacattagagagaagtacccatggggggtgaatgaatttgtaacaatgaactattttgatccagtaaacagaaactaccctcaagtatgctcagaccagtcaatgctagaaatgtttgacaagaatatgactagcaaggaaatatctatgttgattcaaattcataagaacaatgagcaagctgtagttctgccacttgctgattggccaacacctaaaaaggtagttagtggggcagaacctaatgcagttaatatacatgaggtgccatgtactccatctcttgcaatgccatctcaggctactatatctcagcctagcagcagcacacaaccagttgttgatatgtacttggaaaatttatttgaacaaaatgaacatgtcggtgttgacgatgaggatatgtattcagatgatgaaattgttgtggctgtcactaatgctgggcaagagaaagagcctactgatgtgcctaaggtggacagtgaggaaagggatgaggttgaggttgaggtagaggagggggggaggaggagggggaggaggaggaaggggatgaggagtgggtggaggagggggaggaggaggaggaaggggaggaggagtgggtgggcgaagatgctattcctgttaaagatccagaggtggcatatgatagtaatgatccaccgatgacagaaaatagtgtgtatgaaaacattgtgcaattcagattggcaatagctcagcatgctattaaacatgaattcgagtataacattgttaagactgacccagggaggttcattgccaagtgtgctgctgagggatgtgggtggagaattcatgcctcaactatgcaagacggtgttacaatgcaggttataacttaatttctattgttttttcaacaggtttcatagttttgcagttgctaatgaaacaatgtttttgttcctttgttgttttgacaggtgaagaccaatagtgtgcctcactcttgttcaagtgcaagaagaagtgaaaagattaaacctgcaagtaaggcttggatatgtgaaaaggttaaggattggttgttagaggatgcaaccgtgggagcaaaagaattgcaaagaaggatccttgaaactcacaaagttctgattaactacaagagggtatatgctgggaaggaattggctcttgaaaagttgtatggtaaatgggaggacagttttgacaaattgtacagttacaaggcaataattgaaagagaatgccctggaagccttgttgtaattgatcaccacacagtgctgaataagttgagattcagaagactattctttacactaaaaccttgcatagatggttttcgagatggttgcaggccatatgtagcaatagatagcacttttttgaccggcaagttcaagggacagctagcaactgcttgtgctgttgatgggcataactggatgtacccagtagcctttggagtgatggactcagagaccaatgaaaactacaaatggttcatggaaagactttagggatgctattggtaatccagaaggtctcacaatttgtacagatgcagggaaaggagtagatactgcagtacataacatttttcgtgatgtagaacatagagaatgcatgctacatttggtgaataatttcaaaaagaggtttcatggaaaggtgtttgatgataacctctggcctgcagcatactcatataatccatattttttccagaagcacattgagaaaatggatgaagcaaagccagaggctatggcttatttaaggaaaaaccatgttaggctttggactagaagccaattctctgggcaatgcaaggttgattatgttacaaataatttggctgaatgtttcaatagctggatcaggccacataaaggattgcacttggtggatttcatggacaagattaggcacaagttaatggtgaagtggaacaggagaagatcaatttcaaaaaagctagaagggaatatactaccacacattatgaatgaattgaatgaaaagagcaggggtttgaaccatgaggttacaagaagtgatgatgcattagcagaggtggagtgcaagggaggaagtggccacaggttagtttttttttatgttcattgcaacttaattgccaagtttgtgcacttcctaagtataccatgtttgttcttttgttctggtggtaggtttgttgtcaatcttacagataggacatgtagctgtagagagtggcaggtttcaggcaaaccatgcacacatgctatagcttttatcacatccatccgaggctgcaaacttgagaattttgtagatgagtgctactctgttagtaggttccaaatggcttattcaaaagtaatccctcctttggttgacaaatctcaatggcccaatcctacccatgacttcttgcatccaccggttctaaaaaggtagcaggcaggccaaaaaggacaagatatagaggttgtagtgaaaagggcaacccaggaggagttaacaagggcaagcattagtgcccgttgtgtaagggttatggtcatcattggcatagttgcagagagggtgatcctgctgattaccaagcaatgctagctgaaaggtaacctttttaattgataataatgtgatatattttatgtttaccctcattgtaaattctgttatacaacctactactcgtttgcaggggacctccaaaaaaaaggcaaaagtctagtaatgcacatgctgaaactagcattgtacatgttcctagtgcatcttctgctcaaaatgcaatattgtctgcaacaatgacatatccaccaagcaaaagttgtcaaaccgggaaaaaaggacaggacctcagtaatacttcatcagggtcagttaggtatattagttccatctaccattgcaataatgacttcctcatatgcttacattttcctttaccatttatgtcaatgtcagatcaaggtcagtgacaggatccaaccaacctgaacctttgagtgtgttgatgccactagcagcgcctggagagaactctaaggccaaggctaagacagaccaaaactaaagccaagatagctcctaggaagaatacaaaggatagcgctgctactacgcctttggcacaagtcaaacaaaaaggcaacttcattcctgtgtctcctgatagtccagccatgagtacaaggagcaaaaagaaatctctaaattttaattagggatcctttttaattaacatgtgctcacatattttggtactgtgatctctggttgcacggtacttatgtagtactccagttaatctagcgttttggtactatggtgctgatgcattttagtcatgtatatggtgatggtactgtatgtggtgagatggcacttctatggcactgcaagacatgcatatgtgatggtactgtatgtggcacttaatgatagtgatgcattttggggttgtatgcaaatctgtgatgagagatgatgcactgtatgtgc
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| CDS seq | atggatcctggtaaagcatatctgttgaaaatcaggctccatgggcaccaaagtagagaaaactttacatttagaacagaggaagtgatagatagcgacagaacaaacttcaaggattttattgatcacattagagagaagtacccatggggggtgaatgaatttgtaacaatgaactattttgatccagtaaacagaaactaccctcaagtatgctcagaccagtcaatgctagaaatgtttgacaagaatatgactagcaaggaaatatctatgttgattcaaattcataagaacaatgagcaagctgtagttctgccacttgctgattggccaacacctaaaaaggtagttagtggggcagaacctaatgcagttaatatacatgaggtgccatgtactccatctcttgcaatgccatctcaggctactatatctcagcctagcagcagcacacaaccagttgttgatatgtacttggaaaatttatttgaacaaaatgaacatgtcggtgttgacgatgaggatatgtattcagatgatgaaattgttgtggctgtcactaatgctgggcaagagaaagagcctactgatgtgcctaaggtggacagtgaggaaagggatgaggttgaggttgaggtagaggagggggggaggaggagggggaggaggaggaaggggatgaggagatccaaccaacctgaacctttgagtgtgttgatgccactagcagcgcctggagagaactctaaggccaaggctaagacagaccaaaactaa
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| Protein seq | MDPGKAYLLKIRLHGHQSRENFTFRTEEVIDSDRTNFKDFIDHIREKYPWGVNEFVTMNYFDPVNRNYPQVCSDQSMLEMFDKNMTSKEISMLIQIHKNNEQAVVLPLADWPTPKKVVSGAEPNAVNIHEVPCTPSLAMPSQATISQPSSSTQPVVDMYLENLFEQNEHVGVDDEDMYSDDEIVVAVTNAGQEKEPTDVPKVDSEERDEVEVEVEEGGRRRGRRRKGMRRSNQPEPLSVLMPLAAPGENSKAKAKTDQN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0018800 | OsKeNa_04g0018800.01 | Chr04 | 23108946 | 23112566 | + | NAM | ||
| CDS seq | atggatcctggtaaagcatatctgttgaaaatcaggctccatgggcaccaaagtagagaaaactttacatttagaacagaggaagtgatagatagcgacagaacaaacttcaaggattttattgatcacattagagagaagtacccatggggggtgaatgaatttgtaacaatgaactattttgatccagtaaacagaaactaccctcaagtatgctcagaccagtcaatgctagaaatgtttgacaagaatatgactagcaaggaaatatctatgttgattcaaattcataagaacaatgagcaagctgtagttctgccacttgctgattggccaacacctaaaaaggtagttagtggggcagaacctaatgcagttaatatacatgaggtgccatgtactccatctcttgcaatgccatctcaggctactatatctcagcctagcagcagcacacaaccagttgttgatatgtacttggaaaatttatttgaacaaaatgaacatgtcggtgttgacgatgaggatatgtattcagatgatgaaattgttgtggctgtcactaatgctgggcaagagaaagagcctactgatgtgcctaaggtggacagtgaggaaagggatgaggttgaggttgaggtagaggagggggggaggaggagggggaggaggaggaaggggatgaggagatccaaccaacctgaacctttgagtgtgttgatgccactagcagcgcctggagagaactctaaggccaaggctaagacagaccaaaactaa
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| Protein seq | MDPGKAYLLKIRLHGHQSRENFTFRTEEVIDSDRTNFKDFIDHIREKYPWGVNEFVTMNYFDPVNRNYPQVCSDQSMLEMFDKNMTSKEISMLIQIHKNNEQAVVLPLADWPTPKKVVSGAEPNAVNIHEVPCTPSLAMPSQATISQPSSSTQPVVDMYLENLFEQNEHVGVDDEDMYSDDEIVVAVTNAGQEKEPTDVPKVDSEERDEVEVEVEEGGRRRGRRRKGMRRSNQPEPLSVLMPLAAPGENSKAKAKTDQN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.105869 | 2.078447 | 1.705326 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41220 | RBH | 1.238126 | 1.854525 | 0.565384 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018010 | RBH | 0.461190 | 4.752254 | 7.703535 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018500 | RBH | 1.566154 | 2.216166 | 5.492369 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018220 | RBH | 0.121216 | 0.097660 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018420 | RBH | 9.927570 | 11.750669 | 17.365955 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017210 | RBH | 0.000000 | 0.098802 | 1.229784 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0525100 | SBH | 0.1228435 | 0.6336125 | 0.052227 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017710 | RBH | 0.174043 | 0.202507 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017550 | RBH | 0.498397 | 12.377234 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018060 | RBH | 0.977768 | 0.647220 | 0.771770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017510 | RBH | 0.320903 | 2.981877 | 2.261195 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017440 | RBH | 0.0 | 0.0 | 0.0 |
