Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0553600 | OGI:12058660 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:22497610-22502497 | ||||||||
| Gene Symbol | GNP12 | ||||||||||
| DNA seq | AACAAATGCAGTGGAGAATATATATTTCAATCCGTGGAGTAAATAATCCATTTCAACAATCCCACCATGAATAATATGAAAACTAACAGGGTCTTATATCTTCTTCCTTGAATTCCAAATAACATAGTACTGCTCTTTATAGAGAGCCAACTAAACAACTCGATTCTAATTTCATGGAATGGAAACAACCAAAACAACTGGTAGATAGATAGATAGATAAGCCGATAATTTCACCCACTCTGTTGCATCGCCTATTGTTCGTGCGCTCCCTTGTTGGGCTTACGATGATAGATTGCAGGTGATACTGAACGACCATAATTACATGACGAGTAAGACACCTGCAACAACAAGTTAGTTTTTATTAAATCTACCATTGAATATATTTTTATTGTATTTTACTTTGCTTTGGAAATGTTGTTATTTGATCAAACTTGAATAAGTTTGATTTAGGAAAAACCCTTCATCGATTTGTAGTGTGAAAAGGAGTACAAGGTAAAAAAAAAAGTCTCAATTGAATGATTATTTGTGTTGTACAGATAAAAAAACCAGGCAAATATCTAACCATGCAAATATGCAGAAATTTGGCTAGTTGGAAATTAACTTGGAGTGACCCACGCATATAAGCATTATTTAGAGATGCACTTGATACTGCAGTGGTAAGATGTGTGTGGTTTCAACCCTGAGATCACGTGTTCAATCCCCAACATGCTCGTAATTTCTCAATATAACAATTCTCTTACGTAACATAGTTGACACTTGACTGCAATGGCATAAAAGAAATCATCTCAATATAACAATTCTCTTACGTAACGATATAGGGGGAGGGGAAAAAAGGAATGTATAACTAGGAGTAAGAAGTTGATTGCACGCTGATATGCTAAAGTTCATAAAGAGTTTTTTGGGTTTTTTTTAAGATAATGAATAACCTGGCAGCTGCATCAAAGACGTACATAGGCTATCATGCATTACTGTACGCCAAGCAAAGATAGAAAAAAATAACGTTCATAAAGATACATCATATTAAACGTTGAGTGGGAGGCTTGGTGGACCTAGCATTATATAACAGCTAGTGCATGAAAAAGAAGGTTGTTGATTAGGGGAAGAAATCAGCTAAGTACCTGAATTAGTTCACCGTAATAGTAATTCGAGCGCTGCTTGATTTGGATAGTCCTTAAGTGCCTCTTCAATAACAGCCGTGTTCTCACCCATGTAATCAATGGTTACATGCCGAAGGGAGTGGAGGTTCTCCAAACCTAAATCATTTAAGTCACCCCTCCTTAGTCTGGTCCCAATACGAAGACAAAGCCTTTCAAGGTGGGGCATAGCTCCTGGTTGAAACGACGGCATCATGCAGCTATAAAAGTGAAAATCTTTTAAACTCCGAAATGCACATGCACCTCTGTGGATAGTGAGCTTTTCCTGCAGTTGTTCCGAAACAAATGCTAACTGTAGCCTGAGAAAGCGAAGAGATGGAAGCTCAGCGAGGCGATCAAGGTGGTCAGACTGGAGATATTCGAAATCCAGACAAATGGATAAGGTGGTGAGGCGGGAGAGCATCGACGAATTGATCCAACATGGGAATGCTTTCATATACGAATGGTGCATGAACAACCTTTGGAGACCGAAAGGAACCTGTTGCATGTCTATGATTTCTTCAAAATTAAAATTATTTCTCAAATCTAGGTCTTGCAAATTGGTGAACCTTTGTATAGACGTTTGAATGGATTCCTTTAACTCTAATGTTTTGACACTATTGAAAACGATCCTAAGAGTCCTTAGCTCTGTCAAATTACCAATCTCTTTTATTACCTTTCAGGTAGCTTCTATTACAAGCTCCTGTAAAGATTTCATATCCCTTAGCATCAGACCTTGTGCCAGCTTCACTCTGCCAGCATATAGCCGCAATAGTTTCCTTAGTTTGACAAAAGACATTGGAAACAGCACCTTATGAGATTTTGAAGAATTTGGTTTCCTTGCACCTCTTATGTCCAAGGTTTCGAGAGATTCCAGTTTCCCAATGCTTTCAGGGAGCTTAGTGGCACTATAGTGCCCTAGACGCAGAAATCTTAGGAGGCGTAGCTTATCGAGATGATTAAGATGGTTCTTGTCCATTCCACTGCAGTCCTCAAGCTGCAACACACGCAGGACATGAAAGCTCGACAAGGGTGGTATCGAGTCGACCTTGCCGAAGATAGTAATGGACCTTACTTTGGACAATTGTTCTCTTGCTTCTGGTGAGGCATAGGACTTATTGCTGTTATGGAGAGATAATCGGCGAATCTTCTTCTTTTGTGCTGTACATGTATGTTTACCTGTTTGTTGACCATCTGATAAATACGTTGTAACAAAATCTTCTTCTACTGACAGCTGATTTATTAGCTCAAGCACCATGTCATGTACTTTGCATTGATGCACCTTACCATCATCCAACAGATAATAGACACTCATCGGCTGGATCAAGCTTCGATTGATGAGCTCGCTGAAGTAGCTCTCTCCAATCTCCTGCAAGCTTGTCCCTGCAGGTCGTGTTTCATCTGTAATAAAACCCTCTGCAAACCAATCCCATATCAAAACATCTTTTCTAATTAGCTCATCCTCAGGATATTTGCTTAGAGACAACAAGCAAGTCTTCAAATGAAAAGGTAGATCGTTGTAACTGAGGCTTAATATCTTCCGCATGTTGTCCACATCAAGGTTGTTCTCCAGCCCCAAACTGATAGACTTATTGACCTTGTCCCATTCCTCTGAATTCCTTGGTTTGCTAGCAAGTAGGCATGCTGTAGTGATGATTGCTAGCGGTACACCACCACATTTCTTCAAAATTTTCTCAGTGACACCACACAAATCAGCAGGACAGTCATCGTTAGAGTCAAATATTCGTTTGCAGAACAATTGTCTGGAATCATCATCAGATAAGGGTTTCATTTCATAAACACCACCGCCTGCATGTTCTGCAACGACCTTGTTTCGCGTGGTTACAATTATTTTGCTACCAAGTTTAGCATCTTGCACAGCAAGTTTGATAGTATCCCACGCTGATTTTTTCCATACATCATCAATCACGCACAAGAACCTAAAGATGGTAGCATATACACATGTTATTGAACCTAGATATAAATCATGTGAAGCCTGTCCAAAAAAGATAGGAATATGTATCTTGCACATTGAATGTCGAAAATGATGTGCAGCTTTAAATGTGTAATTTTCCAACAATTTTGACACAATAAGTGCAGCTTTGTGAATTTCTATTCACAAAGTTACAAAGATACTTAATTATGCGTAAATAGGGCAGATTTCTGAATAACTATGTGTTCCATTGGAAAACCAAAACTTTATTTACAAGCCAGTTATATTATAATAGTATAAAAACTTGAGCTAGGATTCCCGGTTATATTAGAATACAATAAAAACTTGAGCCAGGACTCTTATTTGTACAACAAAAGGTATCTTCAAATAATGATAAAAGGTAGGTATAACATAGAAATGTACCTTCTATTGTTGAGGAAGTCTCTAATTTTGTCGATGAGCTGCTTCGTTTCCCATGTTTCATCTATGTGGGAATACATTTTCTCATCAAGTTGGAGAAGAATGTTCTTGAGAATCTTGTTTATATCAGGATTCAAGGACACCGAAACAAAACAATAGCTGTCAAATTTTGCCTTAAGCTCCTGAAATAATGAATTGGCAAGAGTTGTCTTTCCTAAGCCTCCGAATCCAACAATAGAAATTATATTTGATTGTTGGCTGGAAGAGCCGTCATATTCCAAGAGTCGCTTAGTTAGCTCATTTTTTGGCTTGCTAATGCCAATGAGTTATGTTGCCTTTCGGTACATAGCTTCTAGGCGAGGATCAACATCCACAACAGTTGGCCTGGCAGCATTGTCGTCGACTATGTACCTATCACGACGCTCGCTGACCTTCTTGACCTGGTCCATGATGTCTTTCATGACACCGTGGATCTGATGGTTGGTTTTGAACTTGTTGAACAAATTGGTGACCTTCTTGAAGCTCGTGGCAGGTTCATGCCCCTTGCACTTTAACATGAAGGTGTCGATGGCATCCTCGATGTCGTAAGATAGCTCTCTCACCTCGCTGGCCCAGATCTTGACCTGCTGGTCAAGTTGATCCACAGGTGTCTCAGCCACCTTGTGGAGTGCTGCGTTCATACCTTTCAACTCTTTCTCAAGTTCTTCGATCTCTCCCTTGACACCCTTTTGCAGCTTGTATTCGCCAACCAGCAGCTCCCCAAGCTTGGGGAGGAGGGTGTTCATTGCCCCTGTGGCGATGTTCATCTTGGCCTATCTGATGTTGAATGCCTGCACGGGTACACACAGATGCACTTAAATGAGCCTCTTGAGTTTATCAGTATGTATCAGGATTCAGGAATGATCAAGCAACCGCAAAAACATGGAGAAAAACGACATCTGAATAATTAAGCTGCTATGTAGCATGTCTAATCGAGACTAGATTGAGGTAAGAACCGTGTGCTTGCTGCATCACCTAATCGATCCAAGCAAAGCTCATCACCGTGAGCAGCGCAAGATAGCGACCTCTCAACGCTGTACGGTATACTAGTAACAGGAAGGACCAAGCAACGGCAAAACACAAGGAGAAAATCAGCATCTGGATCAACGGGGCGTACCGGAATCGGAGGTCGATCGGGACAGTGGATGCGGTCGCGCCGTCGCTGGCTCCGCCCCGCCCCGCGCCGCCTCGCCCTTGCTGCGCCGCGAATCGGGTCCGCCGCCACTCAGCCACGTCGCCCGCGATCGATCGATGCCGTGGTGGAAGCGGCCGGCGGCGAGAGTAGGGGAGCTCGGGTCAACGGGTGGGAGACCTGGAGTCAAGCTTGCTCCAGCCGAACAAAGAGAATAATGAGAGGATAACT
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| CDS seq | ATGAACATCGCCACAGGGGCAATGAACACCCTCCTCCCCAAGCTTGGGGAGCTGCTGGTTGGCGAATACAAGCTGCAAAAGGGTGTCAAGGGAGAGATCGAAGAACTTGAGAAAGAGTTGAAAGGTATGAACGCAGCACTCCACAAGGTGGCTGAGACACCTGTGGATCAACTTGACCAGCAGGTCAAGATCTGGGCCAGCGAGGTGAGAGAGCTATCTTACGACATCGAGGATGCCATCGACACCTTCATGTTAAAGTGCAAGGGGCATGAACCTGCCACGAGCTTCAAGAAGGTCACCAATTTGTTCAACAAGTTCAAAACCAACCATCAGATCCACGGTGTCATGAAAGACATCATGGACCAGGTCAAGAAGGTCAGCGAGCGTCGTGATAGGTACATAGTCGACGACAATGCTGCCAGGCCAACTGTTGTGGATGTTGATCCTCGCCTAGAAGCTATGTACCGAAAGGCAACATAA
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| Protein seq | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIEELEKELKGMNAALHKVAETPVDQLDQQVKIWASEVRELSYDIEDAIDTFMLKCKGHEPATSFKKVTNLFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDPRLEAMYRKAT |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0553600 | OsNip_12t0553600-01 | Chr12 | 22497610 | 22502497 | - | RAP2018-11-26 | ||
| CDS seq | ATGAACATCGCCACAGGGGCAATGAACACCCTCCTCCCCAAGCTTGGGGAGCTGCTGGTTGGCGAATACAAGCTGCAAAAGGGTGTCAAGGGAGAGATCGAAGAACTTGAGAAAGAGTTGAAAGGTATGAACGCAGCACTCCACAAGGTGGCTGAGACACCTGTGGATCAACTTGACCAGCAGGTCAAGATCTGGGCCAGCGAGGTGAGAGAGCTATCTTACGACATCGAGGATGCCATCGACACCTTCATGTTAAAGTGCAAGGGGCATGAACCTGCCACGAGCTTCAAGAAGGTCACCAATTTGTTCAACAAGTTCAAAACCAACCATCAGATCCACGGTGTCATGAAAGACATCATGGACCAGGTCAAGAAGGTCAGCGAGCGTCGTGATAGGTACATAGTCGACGACAATGCTGCCAGGCCAACTGTTGTGGATGTTGATCCTCGCCTAGAAGCTATGTACCGAAAGGCAACATAA
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| Protein seq | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIEELEKELKGMNAALHKVAETPVDQLDQQVKIWASEVRELSYDIEDAIDTFMLKCKGHEPATSFKKVTNLFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDPRLEAMYRKAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.477766 | 0.812617 | 2.603114 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0516300 | RBH | 4.147744 | 3.464825 | 3.641097 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36720 | SBH | 0.586333 | 0.434005 | 0.416948 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0553600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016870 | SBH | 0.728661 | 12.296240 | 2.813406 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017000 | SBH | 0.076143 | 5.623502 | 1.953492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017360 | SBH | 1.225808 | 4.216850 | 1.318625 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016680 | SBH | 0.184661 | 0.512904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014640 | SBH | 15.126895 | 4.928723 | 13.624816 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0296800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016150 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0329500 | SBH | 0.0688365 | 1.5986185 | 0.025465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016390 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016580 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016590 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016580 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016760 | RBH | 0.572579 | 2.792268 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016540 | SBH | 0.258270 | 1.224539 | 0.184654 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016220 | RBH | 1.765418 | 4.101892 | 4.229546 |
