Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0016580 | OGI:12058660 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:21634011-21637219 | ||||||||
| Gene Symbol | GNP12, - | ||||||||||
| DNA seq | tcatcgtatttcgagcgctgcttgattaggatagtccttAagtgcctctttaataacagccttgctgttgtcaaccaaggaatAaatgattgcatgccgaagggagtggaggttctccaaacataaatcatttaagtcacccctCcttagtatggcccaaatacgaagatAaagcctttcaaggtggggcatagctcctggttgaaacgacggcatcaTggagctatAaaagtgaaaatcttttAaactccgaaatgcacatgcacctctgtggatagtgagcttttcctgcagttgttccgaaacaaatgctaactgtagcctgagaaagcgaagagatggaagctcagcgaggcgatcAaggtggtcagactggagatattcgaaatccaGacaaatggataaggtggtgaGgcgggagagcatcgacgaattgatccaacatgggaatgctttcatatacgaatggtgcatgaacaacctttggagaccgaaaggaacctgttgcatgtctatgatttctTCcaaattaaaattatttctcaaatctaggtcttgcaaattggtgaacctttgtatagacgTttgaatggattcctttaactctaatgttttgacactattgAaaacgatcctaagagtccttagctctgtcaaattaccaatctcttttattacctttcgggtagcttctattacaagctcctgtaaagatttcatatcccttagcatcagaccttgtgccagcttcactctgccagcatatagccgcaacagtttccttagtttggcaaaagacattggaagcatagtaccgcaatcagttagattttgaagactaaatggtttccttgcacagctctatgatgtttaatggttacgacttggtttccttgcacctcttatgtccaaggtttcgagagattccagtttcccaatgctttcagggagcttagtggcaccatagtgccctagacgcagaaatcttaggaggcgtagcttatcgagatgattaagatggttcttgtccattccactgcagtCctcaagctgcaAcacAcgcaggacatgaaaGctcgacacgggtggtatcgagtcgccttgccgaagatagtaagtgaccttactttggacaattgttctcttgctctggtgaggcataggacttattgctgttatggagataatcggcgaatcttctttcttttgtgctgtacatgtatgtttacctgtTtgttgaccatctgataaatacGttgtaacAaaatcttcttctactgacagctgatttattagctcaagcaccatgtcatgtactttgcacgcatgcaccttaccatcatccaacaGataatagacactcatcGgctggatcaagcttcgattgatgagctcgctgaagtagctctctccaatctcctgcaagcttgtccctgcaggtcgtgtttcatctgtaataaaaccctctgctaaccaatcccataTcaaaacatcttttctaattagctcatcctcaggatatttgcttagagacaacaagcaagtcttcaaatgAaaaggtagatcgttgtaactgaggcttaatatcttccgcatgttgtccAcatcaaggttGttctccagccccaaactgatagacttattgaccttgtcccattcctctgaattccttggtttgctagcaaGtaggcatgctgtaGtgatgattgctagcGgtacaccaccacatttcttcaaaattttctcagtgacaccacacAaatcagcaggacaGtcatcgTtagagtcaaatattcgtttgtagaacaaatgtctggaatcgtcatcagatAagggtttcatttcatAaatacCAccgcctgcatgttctgcaacgaccttgtttcgcgaggttacaattattttgctaccaagtttagcatcttgcacagcaagtttgatagtatcccacgctgattttttccaTacatcatcaatcacgcacaagaacctaaagatggtagcatatacaaatgttattgaaCctagacatAaatcAtgtgaagcctgtccaaaaaagataggaatatgtatcttgcacattgaatatcgaaaatggtgtgcagctttaaatgtgtaattttccaacAattttgacacaataagtgcagctttgtgaaTttctattcacaaagttacaaagatacttaattatgcgtaaatagggcagatttctgaatAattgtgtgttccattggaaaaccaaaactttatttacaagccagttatAttagaatagtataaaaacttgagctaggattcccggttatattAGaatacaataaaaacttgagccaGgactcttattcgtaCaacaaaaGgtatcttcaaataatgataAaaggtagGtataacatagaaatgtaccttctattgttgaggaagtctctaaTtttgtcgatgagctgtttcgtttcccatgtttcatctatgtgggaatacattttctcatcAagttgGAaaagaatgttcttgagaatcTtgtttatatcaggattcaaggacaccgaaacaaaacaatagctgtcaaatgttgccttaagctcctgaaataatgaattggcAagagttgtctttcctAagcctccgaatccaACAatagaaattatatttgattgttggctggaagagccgtcatattccaagagtcgcttagttagctcattttttggcttgctaatgccaatGagttctgttGcctttcGgtacatagcttctaggcgaggatcaacatccacaacagttggcttggcagcattgtcatcgactatgtacctatcacgacgctcgctgaccttcttgacctggtccatgatgtctttcatgacaccgtggatctgatggttgGtttTGaacttgttgaacaaattggtgaccttcttgaagctcgtggcaggttcatgccccttgcactttaacatgAaggtgtcgatggcatcctcgatgtcgtaagatagctctctcacctcgctggcccagatcttgacctgctggtcAagttgatccacaGgtgtctcagccaccttGtGgagtgctgcggtcataccttTCAactctttctcaagttctttgatctctcccTtgacacccttttgcagcttgtattcgccaaccagcagctccccaagcttggggaggagggtgttcattgccccagtggcgatgttcaT
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| CDS seq | AtgaacatcgccactggggcaatgaacaccctcctccccaagcttggggagctgctggttggcgaatacaagctgcaaaagggtgtcaAgggagagatcaaagaacttgagaaagagtTGAaaggtatgaccgcagcactcCaCaaggtggctgagacacCtgtggatcaactTgaccagcaggtcaagatctgggccagcgaggagcttaaggcaacatttgacagctattgttttgtttcggtgtccttgaatcctgatataaacaAgattctcaagaacattctttTCcaactTgatgagaaaatgtattcccacatagatgaaacatgggaaacgaaacagctcatcgacaaaAttagagacttcctcaacaatagaagacatttgttctacaaacgaatatttgactctaAcgatgaCtgtcctgctgattTgtgtggtgtcactgagaaaattttgaagaaatgtggtggtgtacCgctagcaatcatcaCtacagcatgcctaCttgctagcaaaccaaggaattcagaggaatgggacaaggtcaataagtctatcagtttggggctggagaaCaaccttgatgTggacaacatgcggaagatattaagcctcagttacaacgatctacctttTcatttgaagacttgcttgttgtctctaagcaaatatcctgaggatgagctaattagaaaagatgttttgAtatgggattggttagcagagggttttattacagatgaaacacgacctgcagggacaagcttgcaggagattggagagagctacttcagcgagctcatcaatcgaagcttgatccagcCgatgagtgtctattatCtgttggatgatggtaaggtgcatgcgtgcaaagtacatgacatggtgcttgagctaataaatcagctgtcagtagaagaagatttTgttacaaCgtatttatcagatggtcaacaAacaggtaaacatacatgtacagcacaaaagaaagaagattcgccgattatctccataacagcaataagtcctatgcctcaccagagcaagagaacaattgtccaaagtaaggtcacttactatcttcggcaaggcgactcgataccacccgtgtcgagCtttcatgtcctgcgTgtgTtgcagcttgagGactgcagtggaatggacaagaaccatcttaatcatctcgataagctacgcctcctaagatttctgcgtctagggcactatggtgccactaagctccctgaaagcattgggaaactggaatctctcgaaaccttggacataagaggagcttgtaatagaagctacccgaaagaaatcatagacatgcaacaggttcctttcggtctccaaaggttgttcatgcaccattcgtatatgaaagcattcccatgttggatcaattcgtcgatgctctcccgcCtcaccaccttatccatttgtCtggatttcgaatatctccagtctgaccacctTgatcgcctcgctgagcttccatctcttcgctttctcaggctacagttagcatttgtttcggaacaactgcaggaaaagctcactatccacagaggtgcatgtgcatttcggagttTaaaagattttcactttTatagctccAtgatgccgtcgtttcaaccaggagctatgccccaccttgaaaggcttTatcttcgtatttgggccatactaagGaggggtgacttaaatgatttatgtttggagaacctccactcccttcggcatgcaatcattTattccttggttgacaacagcaaggctgttattaaagaggcactTaaggactatcctaatcaagcagcgctcgaaatacgatga
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| Protein seq | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIKELEKELKGMTAALHKVAETPVDQLDQQVKIWASEELKATFDSYCFVSVSLNPDINKILKNILFQLDEKMYSHIDETWETKQLIDKIRDFLNNRRHLFYKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDNMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWDWLAEGFITDETRPAGTSLQEIGESYFSELINRSLIQPMSVYYLLDDGKVHACKVHDMVLELINQLSVEEDFVTTYLSDGQQTGKHTCTAQKKEDSPIISITAISPMPHQSKRTIVQSKVTYYLRQGDSIPPVSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYGATKLPESIGKLESLETLDIRGACNRSYPKEIIDMQQVPFGLQRLFMHHSYMKAFPCWINSSMLSRLTTLSICLDFEYLQSDHLDRLAELPSLRFLRLQLAFVSEQLQEKLTIHRGACAFRSLKDFHFYSSMMPSFQPGAMPHLERLYLRIWAILRRGDLNDLCLENLHSLRHAIIYSLVDNSKAVIKEALKDYPNQAALEIR |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0016580 | OsLiXu_12g0016580.01 | Chr12 | 21634011 | 21637219 | - | NAM | ||
| CDS seq | AtgaacatcgccactggggcaatgaacaccctcctccccaagcttggggagctgctggttggcgaatacaagctgcaaaagggtgtcaAgggagagatcaaagaacttgagaaagagtTGAaaggtatgaccgcagcactcCaCaaggtggctgagacacCtgtggatcaactTgaccagcaggtcaagatctgggccagcgaggagcttaaggcaacatttgacagctattgttttgtttcggtgtccttgaatcctgatataaacaAgattctcaagaacattctttTCcaactTgatgagaaaatgtattcccacatagatgaaacatgggaaacgaaacagctcatcgacaaaAttagagacttcctcaacaatagaagacatttgttctacaaacgaatatttgactctaAcgatgaCtgtcctgctgattTgtgtggtgtcactgagaaaattttgaagaaatgtggtggtgtacCgctagcaatcatcaCtacagcatgcctaCttgctagcaaaccaaggaattcagaggaatgggacaaggtcaataagtctatcagtttggggctggagaaCaaccttgatgTggacaacatgcggaagatattaagcctcagttacaacgatctacctttTcatttgaagacttgcttgttgtctctaagcaaatatcctgaggatgagctaattagaaaagatgttttgAtatgggattggttagcagagggttttattacagatgaaacacgacctgcagggacaagcttgcaggagattggagagagctacttcagcgagctcatcaatcgaagcttgatccagcCgatgagtgtctattatCtgttggatgatggtaaggtgcatgcgtgcaaagtacatgacatggtgcttgagctaataaatcagctgtcagtagaagaagatttTgttacaaCgtatttatcagatggtcaacaAacaggtaaacatacatgtacagcacaaaagaaagaagattcgccgattatctccataacagcaataagtcctatgcctcaccagagcaagagaacaattgtccaaagtaaggtcacttactatcttcggcaaggcgactcgataccacccgtgtcgagCtttcatgtcctgcgTgtgTtgcagcttgagGactgcagtggaatggacaagaaccatcttaatcatctcgataagctacgcctcctaagatttctgcgtctagggcactatggtgccactaagctccctgaaagcattgggaaactggaatctctcgaaaccttggacataagaggagcttgtaatagaagctacccgaaagaaatcatagacatgcaacaggttcctttcggtctccaaaggttgttcatgcaccattcgtatatgaaagcattcccatgttggatcaattcgtcgatgctctcccgcCtcaccaccttatccatttgtCtggatttcgaatatctccagtctgaccacctTgatcgcctcgctgagcttccatctcttcgctttctcaggctacagttagcatttgtttcggaacaactgcaggaaaagctcactatccacagaggtgcatgtgcatttcggagttTaaaagattttcactttTatagctccAtgatgccgtcgtttcaaccaggagctatgccccaccttgaaaggcttTatcttcgtatttgggccatactaagGaggggtgacttaaatgatttatgtttggagaacctccactcccttcggcatgcaatcattTattccttggttgacaacagcaaggctgttattaaagaggcactTaaggactatcctaatcaagcagcgctcgaaatacgatga
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| Protein seq | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIKELEKELKGMTAALHKVAETPVDQLDQQVKIWASEELKATFDSYCFVSVSLNPDINKILKNILFQLDEKMYSHIDETWETKQLIDKIRDFLNNRRHLFYKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDNMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWDWLAEGFITDETRPAGTSLQEIGESYFSELINRSLIQPMSVYYLLDDGKVHACKVHDMVLELINQLSVEEDFVTTYLSDGQQTGKHTCTAQKKEDSPIISITAISPMPHQSKRTIVQSKVTYYLRQGDSIPPVSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYGATKLPESIGKLESLETLDIRGACNRSYPKEIIDMQQVPFGLQRLFMHHSYMKAFPCWINSSMLSRLTTLSICLDFEYLQSDHLDRLAELPSLRFLRLQLAFVSEQLQEKLTIHRGACAFRSLKDFHFYSSMMPSFQPGAMPHLERLYLRIWAILRRGDLNDLCLENLHSLRHAIIYSLVDNSKAVIKEALKDYPNQAALEIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0516300 | SBH | 4.147744 | 3.464825 | 3.641097 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36730 | RBH | 1.097492 | 0.540175 | 0.687501 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0516300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016880 | RBH | 0.290254 | 3.366494 | 1.331090 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017010 | RBH | 0.000000 | 1.999924 | 0.945851 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017360 | RBH | 1.225808 | 4.216850 | 1.318625 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016690 | RBH | 0.095356 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016180 | SBH | 0.0 | 26.387714 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0296800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016120 | SBH | 0.0 | 0.251442 | 0.047281 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0329500 | SBH | 0.0688365 | 1.5986185 | 0.025465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016360 | SBH | 0.0 | 0.309585 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016580 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016760 | RBH | 0.572579 | 2.792268 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016540 | SBH | 0.258270 | 1.224539 | 0.184654 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016220 | RBH | 1.765418 | 4.101892 | 4.229546 |
