Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0500400 | OGI:12051320 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:19037314-19038965 | ||||||||
| Gene Symbol | RLCK371, OsRLCK371 | ||||||||||
| DNA seq | TCACCGTTCTTGGTATTTCGGCTTCGACGGCGGCACCTTCGGCGGCTGCACACCGTCAGATTTAAGGATCTCGACGACATCCCTAATCTTGGGCCGTTGCTTGGGGTCAGGGTGGCTGCAGGCAAGTCCGACGAGGAGCATCTTCTTGGCCTCGACCGCATCTCTCCTCCGGCCACCGCCGCAGCCGCCATCGTCGCCGGCAGCGATGCCAAGGGTCGCATCAGCCGCCTCGAGGATGCGGCCTGCCTCGTGCAGCGCCCAGACCCACTCGACCAGGGACCTGAAACGACGACGATCACCGTCGCCGCCGCCGGAGTCGTCGAGGTCGGACCGGCGGCCGGAGACGACCTCGAGGACCACCGCGCCGAAGCAGAGGACGTCCGTTTCGCTGCTCATCCTGACGATGTCGCCCGTCGGGGCGGGGCTGGTGCAGCGGCGCCGGAAGCGGCGGGACCAGGAGTAGCCGAAGTCGCCGAGGCGCGCGGTGAAGTCGTTGTCGATGAGGATGTTGGAGGCCGTGACGCAGCCGTGGACGGCGCCGTGGCTGTGGAAGTGGTGCAGGCCCCGGGCGGCGCCGGCGATGATCTTGGAGCGGCGATCCCAGCTCAGGATCGCCGCCGAGCTCCCTGCACCGGCGAACAGGTGCTGGGATAGGCTGCCGTGGGGCATGTAGTCGTACACCAGGTGGAGTTTCCGATATCTCACGCAAAACCCTGGAATGGGATGATTTAGAAGGGAAACTCTATTCATCCTCTGATAGGATATTCCTCGTTTTTCATGTCACTCGAAGGATTACTAAAGAATTTTAAAAGTTTTTCATGTCACTCGAAAGATTGCTAAAGGATTTTAAAATATCTAGTAAAATATGTAATACGTCACTCTACAAACATATATGTTCAAATCGTATTCAAATTTGTTATTTTTTCTAATTAAATATGTCGAATTTGTATATAGATATTTGTGGGATGATTTATCACATATTAATCTATCTTGCTAAATTTTATAAATTTTGTTGACAACTATTTAAATGTTATGCACAAAATGAGAGGACGAGAAAAAAAATCCATCTCCGAGTTACAACACTAGCGGTCTACAAAATATAAATACAATACAGAGTATACAATTAATAAATTTGAAACTGAAATATAATGTAGATCGATTGAGTATGAACATCAACATATGGATGCACGATTACCATAACCATGGAGGCGGACGACGTTCCTGTCCTGGAGAAAGCGGCGAGCCCTGAGGTCCCGGCAGACGAGCCTCATCTTCTCCTCGGAGAGGATGTCGTGGAACCTCTTGACGGCCACGTCGACGGCGACGCCGTCGTGCCCCAGGAGCGTCCCCCTGAACACCGCCCCGGTCTGGCCCTGCCCCAGCCTCCTCCTCGCGCCGTCGTACCTCCCCGTCGCCGCCGCCAGCTCGTCGCCGCTGTACTCCCACAGCGGCAGCGCCGACGACTCCACCCCGCCGCCGGTGGAGGAGGTCACCGGCGACGGCGAGGAGGGGAACGACAAGGGGGTGGCGCTGATATCGGCTGTGACGACCAGAAGTGATTCGGGGTTGCTCCGTTTCGCTCCTGCCGCCGCCCTCTCGCTGCTTTGATCGCTGCGCATCACCGGCCATGGAAAACCCATGGATGCACCCAT
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| CDS seq | ATGGGTGCATCCATGGGTTTTCCATGGCCGGTGATGCGCAGCGATCAAAGCAGCGAGAGGGCGGCGGCAGGAGCGAAACGGAGCAACCCCGAATCACTTCTGGTCGTCACAGCCGATATCAGCGCCACCCCCTTGTCGTTCCCCTCCTCGCCGTCGCCGGTGACCTCCTCCACCGGCGGCGGGGTGGAGTCGTCGGCGCTGCCGCTGTGGGAGTACAGCGGCGACGAGCTGGCGGCGGCGACGGGGAGGTACGACGGCGCGAGGAGGAGGCTGGGGCAGGGCCAGACCGGGGCGGTGTTCAGGGGGACGCTCCTGGGGCACGACGGCGTCGCCGTCGACGTGGCCGTCAAGAGGTTCCACGACATCCTCTCCGAGGAGAAGATGAGGCTCGTCTGCCGGGACCTCAGGGCTCGCCGCTTTCTCCAGGACAGGAACGTCGTCCGCCTCCATGGTTATGGGTTTTGCGTGAGATATCGGAAACTCCACCTGGTGTACGACTACATGCCCCACGGCAGCCTATCCCAGCACCTGTTCGCCGGTGCAGGGAGCTCGGCGGCGATCCTGAGCTGGGATCGCCGCTCCAAGATCATCGCCGGCGCCGCCCGGGGCCTGCACCACTTCCACAGCCACGGCGCCGTCCACGGCTGCGTCACGGCCTCCAACATCCTCATCGACAACGACTTCACCGCGCGCCTCGGCGACTTCGGCTACTCCTGGTCCCGCCGCTTCCGGCGCCGCTGCACCAGCCCCGCCCCGACGGGCGACATCGTCAGGATGAGCAGCGAAACGGACGTCCTCTGCTTCGGCGCGGTGGTCCTCGAGGTCGTCTCCGGCCGCCGGTCCGACCTCGACGACTCCGGCGGCGGCGACGGTGATCGTCGTCGTTTCAGGTCCCTGGTCGAGTGGGTCTGGGCGCTGCACGAGGCAGGCCGCATCCTCGAGGCGGCTGATGCGACCCTTGGCATCGCTGCCGGCGACGATGGCGGCTGCGGCGGTGGCCGGAGGAGAGATGCGGTCGAGGCCAAGAAGATGCTCCTCGTCGGACTTGCCTGCAGCCACCCTGACCCCAAGCAACGGCCCAAGATTAGGGATGTCGTCGAGATCCTTAAATCTGACGGTGTGCAGCCGCCGAAGGTGCCGCCGTCGAAGCCGAAATACCAAGAACGGTGA
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| Protein seq | MGASMGFPWPVMRSDQSSERAAAGAKRSNPESLLVVTADISATPLSFPSSPSPVTSSTGGGVESSALPLWEYSGDELAAATGRYDGARRRLGQGQTGAVFRGTLLGHDGVAVDVAVKRFHDILSEEKMRLVCRDLRARRFLQDRNVVRLHGYGFCVRYRKLHLVYDYMPHGSLSQHLFAGAGSSAAILSWDRRSKIIAGAARGLHHFHSHGAVHGCVTASNILIDNDFTARLGDFGYSWSRRFRRRCTSPAPTGDIVRMSSETDVLCFGAVVLEVVSGRRSDLDDSGGGDGDRRRFRSLVEWVWALHEAGRILEAADATLGIAAGDDGGCGGGRRRDAVEAKKMLLVGLACSHPDPKQRPKIRDVVEILKSDGVQPPKVPPSKPKYQER |
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| Function | Probable L-type lectin-domain containing receptor kinase S.5 [UniProtKB/Swiss-Prot:Q9FG33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0500400 | OsNip_12t0500400-00 | Chr12 | 19037314 | 19038965 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGTGCATCCATGGGTTTTCCATGGCCGGTGATGCGCAGCGATCAAAGCAGCGAGAGGGCGGCGGCAGGAGCGAAACGGAGCAACCCCGAATCACTTCTGGTCGTCACAGCCGATATCAGCGCCACCCCCTTGTCGTTCCCCTCCTCGCCGTCGCCGGTGACCTCCTCCACCGGCGGCGGGGTGGAGTCGTCGGCGCTGCCGCTGTGGGAGTACAGCGGCGACGAGCTGGCGGCGGCGACGGGGAGGTACGACGGCGCGAGGAGGAGGCTGGGGCAGGGCCAGACCGGGGCGGTGTTCAGGGGGACGCTCCTGGGGCACGACGGCGTCGCCGTCGACGTGGCCGTCAAGAGGTTCCACGACATCCTCTCCGAGGAGAAGATGAGGCTCGTCTGCCGGGACCTCAGGGCTCGCCGCTTTCTCCAGGACAGGAACGTCGTCCGCCTCCATGGTTATGGGTTTTGCGTGAGATATCGGAAACTCCACCTGGTGTACGACTACATGCCCCACGGCAGCCTATCCCAGCACCTGTTCGCCGGTGCAGGGAGCTCGGCGGCGATCCTGAGCTGGGATCGCCGCTCCAAGATCATCGCCGGCGCCGCCCGGGGCCTGCACCACTTCCACAGCCACGGCGCCGTCCACGGCTGCGTCACGGCCTCCAACATCCTCATCGACAACGACTTCACCGCGCGCCTCGGCGACTTCGGCTACTCCTGGTCCCGCCGCTTCCGGCGCCGCTGCACCAGCCCCGCCCCGACGGGCGACATCGTCAGGATGAGCAGCGAAACGGACGTCCTCTGCTTCGGCGCGGTGGTCCTCGAGGTCGTCTCCGGCCGCCGGTCCGACCTCGACGACTCCGGCGGCGGCGACGGTGATCGTCGTCGTTTCAGGTCCCTGGTCGAGTGGGTCTGGGCGCTGCACGAGGCAGGCCGCATCCTCGAGGCGGCTGATGCGACCCTTGGCATCGCTGCCGGCGACGATGGCGGCTGCGGCGGTGGCCGGAGGAGAGATGCGGTCGAGGCCAAGAAGATGCTCCTCGTCGGACTTGCCTGCAGCCACCCTGACCCCAAGCAACGGCCCAAGATTAGGGATGTCGTCGAGATCCTTAAATCTGACGGTGTGCAGCCGCCGAAGGTGCCGCCGTCGAAGCCGAAATACCAAGAACGGTGA
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| Protein seq | MGASMGFPWPVMRSDQSSERAAAGAKRSNPESLLVVTADISATPLSFPSSPSPVTSSTGGGVESSALPLWEYSGDELAAATGRYDGARRRLGQGQTGAVFRGTLLGHDGVAVDVAVKRFHDILSEEKMRLVCRDLRARRFLQDRNVVRLHGYGFCVRYRKLHLVYDYMPHGSLSQHLFAGAGSSAAILSWDRRSKIIAGAARGLHHFHSHGAVHGCVTASNILIDNDFTARLGDFGYSWSRRFRRRCTSPAPTGDIVRMSSETDVLCFGAVVLEVVSGRRSDLDDSGGGDGDRRRFRSLVEWVWALHEAGRILEAADATLGIAAGDDGGCGGGRRRDAVEAKKMLLVGLACSHPDPKQRPKIRDVVEILKSDGVQPPKVPPSKPKYQER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31610 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0500400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015270 | RBH | 0.123682 | 5.396679 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015410 | RBH | 0.000000 | 2.566211 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008300 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015120 | RBH | 0.0 | 0.036390 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019820 | SBH | 0.986022 | 3.047392 | 7.619263 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0257400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019720 | SBH | 0.182210 | 0.159759 | 0.639804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0281700 | RBH | 0.1864105 | 0.070723 | 0.1436315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011950 | SBH | 0.0 | 0.0 | 0.624246 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013840 | RBH | 0.0 | 0.0 | 0.0 |
