Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0499700 | OGI:12051190 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:18984514-18986648 | ||||||||
| Gene Symbol | RLCK370, OsRLCK370 | ||||||||||
| DNA seq | ATGCTGAGGATTACTATAAGTTTTCAGGACGCAGCATCTTTTTTCGTTTCCCCATGTCGATCCCGTTTGTTAATTAGCCAGCAAGAAGGGAATCCGCGTCCGAGGTTTCTGAGCTTTGCCATGGCGCTGTGGAGTGGTCTGGGGCAGGCGGCGACGGTGGCGCAGCTGGTCGGGGCAGACGTCGGTAGTCTCATCTCCATGATCGTGCAAGCGGCGGTGACGGCTCAGCACAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGTGCCTTCATGATCGCGGAGCTGCTGCCGCATCTGCGGGATCCGGAGGTGGTGTGTCTGCCCGAGATCCGGAGGCCGCTGGTCGGCCTCGACGACACGCTCCGGGAGGCACACGAGCTCGTGATGTCTTGCCAGGAGAAGAGCGTGATGCACCGGCTGGTAATGGCAGGTCGGCAGGCCGAGAGATTCAGAGAAGTTCAGAGCAGGATCGACTCCTACCTCCTTGTCTTCCCCTTCATCAGCCACATCGATATAACCCGGCGCCTTGATCGGATATACAGAGTTCTTCTTCCGAATGACCACACGCCCGTGCCATCTCCATCTGCAGGCTCCCAGACTCGTGAGCTGGTACGTACACATTTCTTGCTCCAAGCTAATAAATGGACACCTTAACATTCATGCATGCTTTAATTTAAATGAAACTAGAAACTTAGGCTGTGTTTAGTCCGTGTGCCAAAATATTTTAAAGTATACGAACACACATTTGAAATATTAAACGTAGACTAATAACAAAATAAATTACAGATCCGCCTGTAAACTGTGAGATGAATCCTAATTAATCCATCATTAGCAAATGTTTATTGTAGCACCACATTGTCAAATCATGGCGTAATTAGGCTCAAAAGATCCGTCTCGCGATTTACATGCAAACTGTGCAATTGATTTTTTTCGTCCACATTTAATGTTCCATACATATGTCCAAATATTTGATGTGACGGAAAAGTTAAAAGTTCGAAGAAAAAAGAGTTGAATCTAAATTAACACGGCCTTAATAATTGTCTGCGTTTGTCCAGGAGCTCGCAGAGGAGGCCGCTCAAGAGGTGGTATTCCGTGGCGAAGAAGGCGAGAAATTCACCATAGCAGAGCTTGCGACGGCGACCAACAACTTCGCCTCCGACAGACTAATCGGTCGAGGCGGTGTCGGCAATGTGTACATGGGAAGGCTTCCTGACGGGAGAGAGGTGGCCATCAAGCACTTTCCCGAGTTTCACTACACATCTATTGAGGATGATGAGTTCAATGCGGAGCGCATCATCCTCTCACGCATCCGTCACAAGGGCATCATCCGTCTCTTTGGCTGCTGCGTGGAGCGCCACAAGCAGGAGGCTAATAACAAGCGCTCCACATGGTTCTGGAAAAAGAAAGTCGCCGATGCCGGCCTGCAGACGCCGATGACAACGGAGCCTCTCCTCGTTTTCGAGTACATGAGGAACAGCTCCCTTGACAAGCACCTTCATGGCTCGCTGTCGTCCTCCTCGCCGGTGGCCACATCCTGGAGCATGCGCATGGGGATACTGCTGGGCGTGTCGCGGGCCATCGAGTACCTGCACACCCACCCTACGCGGCCGGTGATCCATCGCGACATCAAGCCGTCGAACATCCTGCTCGACGAGGCCTGGGTGCCGCGCTTGTCGGACTTTGGGTTGTCGGTCGCCTGGGACGGGACGGATCACTGTTGTGATCTGTCCATTGACGGCACGCTAGGATACATCGACCCCGAGTACTTTGTGACGCACAGTGTGAAGCCAACGATAGACGTGTACAGCTTCGGGGTTGTGATGCTGGAGGTATTGACAGGGATAAAACCAATTTTTAAACGGAAGGAGAAGGAAGAAGAGGACGACGGTGGCATCATCCCCACGAGCTTGCTGGCCTTCGCCCTGCCAATCGTCGAGGCAGGGGAGGTGCGGAAGGTGCTGGACAGGCGCCCGACGCCGGAGCCAACGCCGAGGCAGCTCCAGGCAGTGGAACTGGTGGCGCAGACTGCAGCTTGCTGCGTGCGGCTGGAGCCCCAGGGCCGTCCAGCCATTTCGGAAGTCGTGGCCAACCTCCAGGCAGCGATCGACCTCATCTCATCCAATGACGATGAGTAG
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| CDS seq | ATGCTGAGGATTACTATAAGTTTTCAGGACGCAGCATCTTTTTTCGTTTCCCCATGTCGATCCCGTTTGTTAATTAGCCAGCAAGAAGGGAATCCGCGTCCGAGGTTTCTGAGCTTTGCCATGGCGCTGTGGAGTGGTCTGGGGCAGGCGGCGACGGTGGCGCAGCTGGTCGGGGCAGACGTCGGTAGTCTCATCTCCATGATCGTGCAAGCGGCGGTGACGGCTCAGCACAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGTGCCTTCATGATCGCGGAGCTGCTGCCGCATCTGCGGGATCCGGAGGTGGTGTGTCTGCCCGAGATCCGGAGGCCGCTGGTCGGCCTCGACGACACGCTCCGGGAGGCACACGAGCTCGTGATGTCTTGCCAGGAGAAGAGCGTGATGCACCGGCTGGTAATGGCAGGTCGGCAGGCCGAGAGATTCAGAGAAGTTCAGAGCAGGATCGACTCCTACCTCCTTGTCTTCCCCTTCATCAGCCACATCGATATAACCCGGCGCCTTGATCGGATATACAGAGCCGCTCAAGAGGTGGTATTCCGTGGCGAAGAAGGCGAGAAATTCACCATAGCAGAGCTTGCGACGGCGACCAACAACTTCGCCTCCGACAGACTAATCGGTCGAGGCGGTGTCGGCAATGTGTACATGGGAAGGCTTCCTGACGGGAGAGAGGTGGCCATCAAGCACTTTCCCGAGTTTCACTACACATCTATTGAGGATGATGAGTTCAATGCGGAGCGCATCATCCTCTCACGCATCCGTCACAAGGGCATCATCCGTCTCTTTGGCTGCTGCACGCCGATGACAACGGAGCCTCTCCTCGTTTTCGAGTACATGAGGAACAGCTCCCTTGACAAGCACCTTCATGGCTCGCTGTCGTCCTCCTCGCCGGTGGCCACATCCTGGAGCATGCGCATGGGGATACTGCTGGGCGTGTCGCGGGCCATCGAGTACCTGCACACCCACCCTACGCGGCCGGTGATCCATCGCGACATCAAGCCGTCGAACATCCTGCTCGACGAGGCCTGGGTGCCGCGCTTGTCGGACTTTGGGTTGTCGGTCGCCTGGGACGGGACGGATCACTGTTGTGATCTGTCCATTGACGGCACGCTAGGATACATCGACCCCGAGTACTTTGTGACGCACAGTGTGAAGCCAACGATAGACGTGTACAGCTTCGGGGTTGTGATGCTGGAGGTATTGACAGGGATAAAACCAATTTTTAAACGGAAGGAGAAGGAAGAAGAGGACGACGGTGGCATCATCCCCACGAGCTTGCTGGCCTTCGCCCTGCCAATCGTCGAGGCAGGGGAGGTGCGGAAGGTGCTGGACAGGCGCCCGACGCCGGAGCCAACGCCGAGGCAGCTCCAGGCAGTGGAACTGGTGGCGCAGACTGCAGCTTGCTGCGTGCGGCTGGAGCCCCAGGGCCGTCCAGCCATTTCGGAAGTCGTGGCCAACCTCCAGGCAGCGATCGACCTCATCTCATCCAATGACGATGAGTAG
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| Protein seq | MLRITISFQDAASFFVSPCRSRLLISQQEGNPRPRFLSFAMALWSGLGQAATVAQLVGADVGSLISMIVQAAVTAQHNKKECEQLARRAFMIAELLPHLRDPEVVCLPEIRRPLVGLDDTLREAHELVMSCQEKSVMHRLVMAGRQAERFREVQSRIDSYLLVFPFISHIDITRRLDRIYRAAQEVVFRGEEGEKFTIAELATATNNFASDRLIGRGGVGNVYMGRLPDGREVAIKHFPEFHYTSIEDDEFNAERIILSRIRHKGIIRLFGCCTPMTTEPLLVFEYMRNSSLDKHLHGSLSSSSPVATSWSMRMGILLGVSRAIEYLHTHPTRPVIHRDIKPSNILLDEAWVPRLSDFGLSVAWDGTDHCCDLSIDGTLGYIDPEYFVTHSVKPTIDVYSFGVVMLEVLTGIKPIFKRKEKEEEDDGGIIPTSLLAFALPIVEAGEVRKVLDRRPTPEPTPRQLQAVELVAQTAACCVRLEPQGRPAISEVVANLQAAIDLISSNDDE |
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| Function | Putative serine/threonine-protein kinase-like protein CCR3 [UniProtKB/Swiss-Prot:Q9LY50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0499700 | OsNip_12t0499700-00 | Chr12 | 18984514 | 18986648 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTGAGGATTACTATAAGTTTTCAGGACGCAGCATCTTTTTTCGTTTCCCCATGTCGATCCCGTTTGTTAATTAGCCAGCAAGAAGGGAATCCGCGTCCGAGGTTTCTGAGCTTTGCCATGGCGCTGTGGAGTGGTCTGGGGCAGGCGGCGACGGTGGCGCAGCTGGTCGGGGCAGACGTCGGTAGTCTCATCTCCATGATCGTGCAAGCGGCGGTGACGGCTCAGCACAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGTGCCTTCATGATCGCGGAGCTGCTGCCGCATCTGCGGGATCCGGAGGTGGTGTGTCTGCCCGAGATCCGGAGGCCGCTGGTCGGCCTCGACGACACGCTCCGGGAGGCACACGAGCTCGTGATGTCTTGCCAGGAGAAGAGCGTGATGCACCGGCTGGTAATGGCAGGTCGGCAGGCCGAGAGATTCAGAGAAGTTCAGAGCAGGATCGACTCCTACCTCCTTGTCTTCCCCTTCATCAGCCACATCGATATAACCCGGCGCCTTGATCGGATATACAGAGCCGCTCAAGAGGTGGTATTCCGTGGCGAAGAAGGCGAGAAATTCACCATAGCAGAGCTTGCGACGGCGACCAACAACTTCGCCTCCGACAGACTAATCGGTCGAGGCGGTGTCGGCAATGTGTACATGGGAAGGCTTCCTGACGGGAGAGAGGTGGCCATCAAGCACTTTCCCGAGTTTCACTACACATCTATTGAGGATGATGAGTTCAATGCGGAGCGCATCATCCTCTCACGCATCCGTCACAAGGGCATCATCCGTCTCTTTGGCTGCTGCACGCCGATGACAACGGAGCCTCTCCTCGTTTTCGAGTACATGAGGAACAGCTCCCTTGACAAGCACCTTCATGGCTCGCTGTCGTCCTCCTCGCCGGTGGCCACATCCTGGAGCATGCGCATGGGGATACTGCTGGGCGTGTCGCGGGCCATCGAGTACCTGCACACCCACCCTACGCGGCCGGTGATCCATCGCGACATCAAGCCGTCGAACATCCTGCTCGACGAGGCCTGGGTGCCGCGCTTGTCGGACTTTGGGTTGTCGGTCGCCTGGGACGGGACGGATCACTGTTGTGATCTGTCCATTGACGGCACGCTAGGATACATCGACCCCGAGTACTTTGTGACGCACAGTGTGAAGCCAACGATAGACGTGTACAGCTTCGGGGTTGTGATGCTGGAGGTATTGACAGGGATAAAACCAATTTTTAAACGGAAGGAGAAGGAAGAAGAGGACGACGGTGGCATCATCCCCACGAGCTTGCTGGCCTTCGCCCTGCCAATCGTCGAGGCAGGGGAGGTGCGGAAGGTGCTGGACAGGCGCCCGACGCCGGAGCCAACGCCGAGGCAGCTCCAGGCAGTGGAACTGGTGGCGCAGACTGCAGCTTGCTGCGTGCGGCTGGAGCCCCAGGGCCGTCCAGCCATTTCGGAAGTCGTGGCCAACCTCCAGGCAGCGATCGACCTCATCTCATCCAATGACGATGAGTAG
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| Protein seq | MLRITISFQDAASFFVSPCRSRLLISQQEGNPRPRFLSFAMALWSGLGQAATVAQLVGADVGSLISMIVQAAVTAQHNKKECEQLARRAFMIAELLPHLRDPEVVCLPEIRRPLVGLDDTLREAHELVMSCQEKSVMHRLVMAGRQAERFREVQSRIDSYLLVFPFISHIDITRRLDRIYRAAQEVVFRGEEGEKFTIAELATATNNFASDRLIGRGGVGNVYMGRLPDGREVAIKHFPEFHYTSIEDDEFNAERIILSRIRHKGIIRLFGCCTPMTTEPLLVFEYMRNSSLDKHLHGSLSSSSPVATSWSMRMGILLGVSRAIEYLHTHPTRPVIHRDIKPSNILLDEAWVPRLSDFGLSVAWDGTDHCCDLSIDGTLGYIDPEYFVTHSVKPTIDVYSFGVVMLEVLTGIKPIFKRKEKEEEDDGGIIPTSLLAFALPIVEAGEVRKVLDRRPTPEPTPRQLQAVELVAQTAACCVRLEPQGRPAISEVVANLQAAIDLISSNDDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0499700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012150 | SBH | 0.0 | 10.072243 | 1.443616 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020880 | SBH | 0.013739 | 0.115015 | 0.423561 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001570 | SBH | 0.648200 | 6.846839 | 10.431496 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011990 | SBH | 0.0 | 0.031539 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020180 | SBH | 1.601891 | 7.926010 | 5.188064 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0242800 | SBH | 0 | 6.289524 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019720 | SBH | 0.182210 | 0.159759 | 0.639804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0263100 | SBH | 0 | 0.2563965 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019960 | SBH | 0.034753 | 0.230908 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020500 | SBH | 0.106541 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008630 | SBH | 0.000000 | 2.894225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011950 | SBH | 0.0 | 0.0 | 0.624246 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008130 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008170 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011720 | SBH | 0.0 | 6.215492 | 3.428627 |
