Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0019960 | OGI:12066610 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:24681901-24685849 | ||||||||
| Gene Symbol | RLCK373, OsRLCK373 | ||||||||||
| DNA seq | gagtcgtagaattcTttttcttgttttctgtataattgaattgtttatatgaaatcatcgcaaaattatcgtgtttcaagtagggcctaaattttgtaaacctcaaggactagtataaacaccaagggtttgtatagctggtgataataaaactcagatgctatgtatacaaacaacattcctacaatagtatctacctagcaaaactacacaaacaaaaaaaaaaaatgtataagatcctctttggctctttccatctccctttcaatttacaaccattgcttttcaggcatcttttcaTtcttcttttatatctttctaacctgaaatcatcttttccttcagatatccaaccttccatcaggggctctcttctaccacagtgctaccagctactgcaagcatggacacctgggagttgctgtctgaaggagatttgggtggagaggcactgaactgaaccggctcaactgttctgattttcaggtccatgacatctgtgatcaggcctggcctcatgatcttatcgccaattgcgcactcgcccttgagcatcttgacgatcgtcgacatggagggcctgatcttcggagtatcttgagtgcacaggagacctaTtttcagtaaccgttgcgcttcctcggtgtcgaagacgcctttcaaggtgccatcaactaggcttttgagatcaccggactcgtagagcgcccaagcctgtcaaaaaaagcatgagtttatgatttcagatgctttggaccagttctaagagtagatatccatgccatgaaagtggtgcttcaagtattgctgagctaattattcaattcttttaagaatcaattcatctcaaagcaatccatacaataattggaccaacacggaaacaccaatggatgtgacttcagaattagaaagcctagtggttgcagtgacctgagtagcaccctaaggttctgagttcaaatctccataggagcggatttcagattgagttgtttacgaagctaagttcccaatttaaatggctgcatatattcgattggatgtagaggccgggtgaaaaaataatcttctctaataataataataataataataataataataataataataataataataaTAATaataataataataataatcaagaaCcacaaagccagcaaatgcatgtggtattgaagaccatttctgacataattcagagcggtggcccatacaagaacacgaagacccgtcaaagggagcTGAttcagttctatgaattgtttactttaataagagaggaaacttccttgtgcatatcattgcaaagctcccagtctcacaagcatatcaaccatattatctgaattgaccagtcattgtgaccagaacaggtatgtgcctagtggtttgtcatacagggaacatacggaatctatcataggtgtttactggacttatacataaaagaatggttcttgctccaatttgttgtctgaaatagctaaagaatcagacagtagtctgggagaagtcatatgcaataataataatgcagatttagaaaagttatatgctattgtcggcattgttctttaccctttcgagtaggaactgatcttgaagaggcaatctggggtcagtgtggcatcttccactgacaatctccagaagtagaactccaaagctgtagacgtcggccttctttgtcagctgccctcggatcgcatactccggtgcaagatatcctctagaaggagaagaatgaaatgccaaattattcatacacaacaatatgcatgaaagatcaaagctgaagagcaacaagaaaatgcctctgcttacagtgttcctgcaaccctggtgctgatatgcgtcatgttgcccgggaaaagctttgccagcccaaaatctgatatcttggggctcagatccttgtcaagaagaatgttgcttgccttgatatcacggtggacgatgaccggccggacttcttcatgaagatacttgagcccactcgcgacgccgatgcatattttcactcttgttttccagtctaattggatactactatgggaattgcctgaaggacatgatcatgatgcttcagagattcagagttctgagaacaaaacgtatCAcaaattcaccatgatttgagaatctagtggaaactgaTtttttttttttgttctttaccaaagagggactgtgcaagactgttgttctccaggtaattgtagaccagcattttctgatctccctcgacgcagcagccatgcaatttcacaagattgtgatggtttatgttggatatgacactcagctcatttaagaactcccttgttccttgccttgactcggaggagagcaccttgatggcaactttctgaccattcctgagctttccctgaacaattcatgtgaggaaatgcgaaatcatgttaatgactggtccaaatggtacagccatagaaacttctaagcatgaagagaatggcaatattgcttctaccactgttcactaattcagtgatagaaactgcatgaagagtatatgtatatattcatcagtttatgataattcaggcatttggaggaactaattgggttatggcacacagggctttgagctttggactttgaaatgtcaatgcttgaaatgactagcaagctaccaggtagacgcagccaaaagaaccctgtcctagtttgtgtcctgagcagaaattttttgtggcttttctgagctccttggaggagtagatcttcacatttctgatgatcggtgtatctgggaaagaacaagatcaatcagaagaaggcatctggatgtttcagaagaagaaaatttgatgaaatgtgagggtttacctttgtcatgctgcacaatttgactcctggattttttgtttctccagaacgcaggaaagcaagtcattactgtaattcagggtttttcttctaggactcttcagctatatcttcagaatatcatgtagagatcaccgtaaaagtactcttggtataaaagtataaacctgagagaaaataatcgatcgataaaaagagattgagataatgtagtactttgttgaaaaattctacacaatgaacctacttttctctttctagagtaatttcaAGaaaaaagggcaaaactcatgccctcaaggaagaaaagacacaccgtctcttttcttgtgtttctccttgctgtgagcccagagagcagaaacgaagaacaaaatctctagaaaactcagaaaaattgtaacaaagaaataaagacatgaagtatgcaaatctgacagagaaacactcgtcccagtcagagttaagaattgtatgttgtccaacaaaatccatgagaaaaaacacttgtattcacattgaattgtagagtaaccaagtttgcggtgtgaccgttgatcttcagaagatgaactgacggttacaaacagaaatagatgaactgatgataagcacaagaaccgaaaggaagagcccattaaatacagtctaatccaaagaaaactgaactaatacctttcctgaaaaaggtttccatgaaaaactttccccagatgaattgaaatattcagtagagacaagagcaatgaaattcttgcaacagacctagacacagaatttagtagattcagcaatgaagAaaaaagaatccaataagcaaaactcacctgaagatcagttaattcaccagcagaaagacttgaggcctgtaatctgtatgaatatccaagaacagccagcacccagcaaagaactcttggagaagaggagaaagaagaggagagagtatgaatctgcaattttagaagcaaaagcatactgctctctgCcctgaatccctgaatatatgggagtccaccagcagatgtcccactgggattgactttagctggttgcaactctgggaagtagcatggaaaagacatag
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| CDS seq | atgacttgctttcctgcgttctggagaaacaaaaaatccaggagtcaaattgtgcagcatgacaaagatacaccgatcatcagaaatgtgaagatctactcctccaaggagctcagaaaagccacaaaaaatttctgctcaggacacaaactaggacagggttcttttggctgcgtctacctgggaaagctcaggaatggtcagaaagttgccatcaaggtgctctcctccgagtcaaggcaaggaacaagggagttcttaaatgagctgagtgtcatatccaacataaaccatcacaatcttgtgaaattgcatggctgctgcgtcgagggagatcagaaaatgctggtctacaattacctggagaacaacagtcttgcacagtccctctttggcaattcccatagtagtatccaattagactggaaaacaagagtgaaaatatgcatcggcgtcgcgagtgggctcaagtatcttcatgaagaagtccggccggtcatcgtccaccgtgatatcaaggcaagcaacattcttcttgacaaggatctgagccccaagatatcagattttgggctggcaaagcttttcccgggcaacatgacgcatatcagcaccagggttgcaggaacactaggatatcttgcaccggagtatgcgatccgagggcagctgacaaagaaggccgacgtctacagctttggagttctacttctggagattgtcagtggaagatgccacactgaccccagattgcctcttcaagatcagttcctactcgaaagggcttgggcgctctacgagtccggtgatctcaaaagcctagttgatggcaccttgaaaggcgtcttcgacaccgaggaagcgcaacggttactgaaaAtaggtctcctgtgcactcaagatactccgaagatcaggccctccatgtcgacgatcgtcaagatgctcaagggcgagtgcgcaattggcgataagatcatgaggccaggcctgatcacagatgtcatggacctgaaaatcagaacagttgagccggttcagttcagtgcctctccacccaaatctccttcagacagcaactcccaggtgtccatgcttgcagtagctggtagcactgtggtagaagagagcccctga
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| Protein seq | MTCFPAFWRNKKSRSQIVQHDKDTPIIRNVKIYSSKELRKATKNFCSGHKLGQGSFGCVYLGKLRNGQKVAIKVLSSESRQGTREFLNELSVISNINHHNLVKLHGCCVEGDQKMLVYNYLENNSLAQSLFGNSHSSIQLDWKTRVKICIGVASGLKYLHEEVRPVIVHRDIKASNILLDKDLSPKISDFGLAKLFPGNMTHISTRVAGTLGYLAPEYAIRGQLTKKADVYSFGVLLLEIVSGRCHTDPRLPLQDQFLLERAWALYESGDLKSLVDGTLKGVFDTEEAQRLLKIGLLCTQDTPKIRPSMSTIVKMLKGECAIGDKIMRPGLITDVMDLKIRTVEPVQFSASPPKSPSDSNSQVSMLAVAGSTVVEESP |
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| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0019960 | OsLima_12g0019960.01 | Chr12 | 24681901 | 24685849 | - | NAM | ||
| CDS seq | atgacttgctttcctgcgttctggagaaacaaaaaatccaggagtcaaattgtgcagcatgacaaagatacaccgatcatcagaaatgtgaagatctactcctccaaggagctcagaaaagccacaaaaaatttctgctcaggacacaaactaggacagggttcttttggctgcgtctacctgggaaagctcaggaatggtcagaaagttgccatcaaggtgctctcctccgagtcaaggcaaggaacaagggagttcttaaatgagctgagtgtcatatccaacataaaccatcacaatcttgtgaaattgcatggctgctgcgtcgagggagatcagaaaatgctggtctacaattacctggagaacaacagtcttgcacagtccctctttggcaattcccatagtagtatccaattagactggaaaacaagagtgaaaatatgcatcggcgtcgcgagtgggctcaagtatcttcatgaagaagtccggccggtcatcgtccaccgtgatatcaaggcaagcaacattcttcttgacaaggatctgagccccaagatatcagattttgggctggcaaagcttttcccgggcaacatgacgcatatcagcaccagggttgcaggaacactaggatatcttgcaccggagtatgcgatccgagggcagctgacaaagaaggccgacgtctacagctttggagttctacttctggagattgtcagtggaagatgccacactgaccccagattgcctcttcaagatcagttcctactcgaaagggcttgggcgctctacgagtccggtgatctcaaaagcctagttgatggcaccttgaaaggcgtcttcgacaccgaggaagcgcaacggttactgaaaAtaggtctcctgtgcactcaagatactccgaagatcaggccctccatgtcgacgatcgtcaagatgctcaagggcgagtgcgcaattggcgataagatcatgaggccaggcctgatcacagatgtcatggacctgaaaatcagaacagttgagccggttcagttcagtgcctctccacccaaatctccttcagacagcaactcccaggtgtccatgcttgcagtagctggtagcactgtggtagaagagagcccctga
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| Protein seq | MTCFPAFWRNKKSRSQIVQHDKDTPIIRNVKIYSSKELRKATKNFCSGHKLGQGSFGCVYLGKLRNGQKVAIKVLSSESRQGTREFLNELSVISNINHHNLVKLHGCCVEGDQKMLVYNYLENNSLAQSLFGNSHSSIQLDWKTRVKICIGVASGLKYLHEEVRPVIVHRDIKASNILLDKDLSPKISDFGLAKLFPGNMTHISTRVAGTLGYLAPEYAIRGQLTKKADVYSFGVLLLEIVSGRCHTDPRLPLQDQFLLERAWALYESGDLKSLVDGTLKGVFDTEEAQRLLKIGLLCTQDTPKIRPSMSTIVKMLKGECAIGDKIMRPGLITDVMDLKIRTVEPVQFSASPPKSPSDSNSQVSMLAVAGSTVVEESP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.034753 | 0.230908 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0574700 | SBH | 0.085684 | 0.0 | 0.158709 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41710 | RBH | 0.119130 | 0.388853 | 0.184350 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0574700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020480 | RBH | 0.537014 | 1.109105 | 1.923650 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020580 | RBH | 0.0 | 0.808210 | 0.788525 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020920 | RBH | 1.030617 | 6.886726 | 2.053297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020230 | RBH | 0.041983 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019820 | RBH | 0.986022 | 3.047392 | 7.619263 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0347400 | RBH | 2.7500945 | 32.6012325 | 0.819948 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019720 | RBH | 0.182210 | 0.159759 | 0.639804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0376900 | RBH | 3.1579 | 41.4187205 | 0.3747955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027430 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020190 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020140 | RBH | 1.258959 | 7.702566 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020170 | RBH | 0.893615 | 0.0 | 0.400186 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020360 | RBH | 0.483095 | 0.457500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019870 | RBH | 0.265773 | 0.0 | 0.449621 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019660 | RBH | 1.084110 | 16.445843 | 1.585951 |
