Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0489200 | OGI:12049750 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:18347192-18349239 | ||||||||
| Gene Symbol | OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12 | ||||||||||
| DNA seq | CAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGGTAATCAGTGTTGGCTAATAATGGTTTTTGCGTACAATTCAAAACTGGCAAGAAATAATCTGAGTGTTTAAGATTTAAGAGTGTAAATATCTGTTTATTTTTATATCTAAGCACATGCAAACCCATTTTACGAATGTGAGCACACAATGTTCGTATTTCTATTCTAAACAATCTGCTGTCAATCCGGTTAACCTGATGCCGAACAAAATAAGCGTGCAGTTTGTTTAACTAAATGTCCAAGAGATTAATGGGCTGTTTGCTGCTTTGCTTCTAGTGAAGTGAGCAAATCAGCAGCCTCGCAGGTCTCTTGCCTTGCTATATTCAGATTACACTGAAAAATATATTTGCTAAACTGATTTGTAAAAGCTGATATGCACCACTGCTATACAAAACAAATGAAGATTATTTACACAGATATGATTTGCATGATCTTTGCAAATGAATAAGATTTGAAATGTAGAAAAATGTTACACCTGCTATGTTTTTCCAATTTCTAAAATGAAGGCTAACTGTCCAATTGGATGTGGGTTGTTGGTCTATACGTGCACGTACATACTCAATTCAGCATCCAATCTATATATCCTATATAGTTGGAACCAAAAATCTCTACATGCATTGAGCCACATCACCTAGAAAATATTTGCCATTGGATCTTTCATGCGTTTAATCTCAACCATCCTTCATGTATTCAGTTACATTTCTTTTATTTATTGATGGTCATTACTTCTATGCATTCATATAGATGACACTTATTTTCCTCCTGCCTTTATTTTCAAATGCAATATTTCTGCAGCTCAATGTAATATTTTTCTGCTCAATAGTTCATACTAAATCTGTATATCCAAAATTGTTCTACTATACCTGCAACAACATGTGGGGTATCATCTACTCCCTCTGTCCCAAAATATAAGACCTAGAACCGGATGGGACATTTCCTAGTACTACGAATCTGGACAGGTACTAGGAAATGTCCCATCCATTCCTAGGTTCTTTTATTTTGGGATGGAGGGAGTAGTTAGTTTGATGGATATCCCGTTCGATAGAATCACCACTGCACGTGACTACATGAGAATCTTGCCTATAGTCACGTGCAGTGTTGAAAAAAAAGTAAAGGGAGAAATGAGTATGTTTACTTTTTTCATTTTGTTTTGTAACAGTGTTGCATGTGCTTAGATTAAGAAAAAATTCGGGTGTAAACGTACTCATTTCTCCCTTTACTTTTTTTTTTCAAGAAATCATTACTGGTTATTTTGGGCTAATATTTTTGTTGCATTGAATGCAATGTGTGCATGTGTAAAAGTAAGCTGGGTTGATTAATGGTGTTTCGAAATTATCTGTATTATTATAGCAGTGTTTTCCATGTAATTGTTCTTTACTCTGGTTATTCAAACTATGCAGAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTATAGCTGGGCTTGAAGCCCTGAACAAAGGCCTCGTCTGGATAGCATGCCATGCCAAAGAGAGATCACAAAGTAAGACAACCTCAACAGAAGAAACATGGCAACAAAACATATGGCCATTACGCTGAGGCCTATATTGCTTCCCGCTGGTTGACGCCGTTGGTGCAGCTTACTCGTGATGTAGTGGGCGTCAGGGATTTTTTTTCAAGGCTTTCCATCTTGTTTCCGGGCAAAACAATTGTGTCGAGTGTGATGGCCCCGCTAGGATAAGGTAGATGTTGCTTTATTTGTGTAGAGCAAAGCTGGTACATAAGAAAAAGATTTTGGTAGGGGCATGTATACAGAATTATAGCCGTGACTGATTGCTTTATTTGCTTCTCCCGTTTCTGTTAGCCTTGGAGCAGTGGGAGAATCGTATAATGGGGTTTGGTGTTGGTTCCAATTTTCCATGTCTATTGATAAAATGTAAGAGAATAATTTGCCAGATAGTGCAGCTTTCAGTTCCTGTTAGC
More
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| CDS seq | CAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGA |
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| Protein seq | QRRDVYGAWEQYLGLEHTDTTPKRSYTANQNRHTFEKPVKIYN |
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| Function | Ubiquitin carboxyl-terminal hydrolase 12 [UniProtKB/Swiss-Prot:Q9FPT1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0489200 | OsNip_12t0489200-01 | Chr12 | 18347192 | 18349239 | + | RAP2018-11-26 | ||
| CDS seq | CAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGA |
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| Protein seq | QRRDVYGAWEQYLGLEHTDTTPKRSYTANQNRHTFEKPVKIYN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.035810 | 9.265041 | 6.435300 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0163800 | RBH | 8.797447 | 8.047026 | 16.284271 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g30540 | SBH | 5.465610 | 5.213951 | 3.030945 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0489200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013640 | RBH | 2.193953 | 49.073418 | 22.707174 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013820 | RBH | 1.122934 | 10.069027 | 12.790362 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013710 | RBH | 4.840822 | 33.160431 | 38.119289 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013530 | RBH | 0.960858 | 1.520828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013200 | RBH | 34.077873 | 77.969604 | 83.331421 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0251100 | RBH | 17.0082235 | 37.8278635 | 28.9259025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013360 | RBH | 1.187724 | 2.568885 | 4.324546 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0273000 | RBH | 19.978524 | 35.7936955 | 37.031015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013340 | RBH | 1.577979 | 1.112721 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013680 | RBH | 2.311290 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017960 | SBH | 9.374911 | 30.907799 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013500 | RBH | 3.960941 | 0.0 | 5.163750 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013690 | RBH | 1.559443 | 29.783054 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013400 | RBH | 2.476998 | 11.318368 | 9.140575 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013220 | RBH | 5.618284 | 51.651127 | 18.223034 |
