Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_12g0443600 OGI:12041100 | 14/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr12:14893170-14896294
Gene Symbol -
DNA seq

AGTAGTAAGCTCCCAGTCCAAACATTTCTCCTCCTCGGTCTGGAGCCGCTCCCCCCTCCCCGCCGCCGCTGCTCTCGACGCCGACGCCGACGAGGCAGCTAGGCCGGCGACGAACCTCGATCTCGATCCGCTCGCCGCCGTCCGTCGCCGATCCGCGCGCCGACACCGACACCGACCTTGATCCTGATCCGCGCTCCCCGCGACGTACGCCACGGTGGGCTCCCGATCTGACCCCATCCTCCATCCACCCTCCTCACTCTCCGCCGTCGTAGTATATCTCAGGAGGGCTACCAGCTGAGCCGAGGGAGGAGAACTGGATGCCTCGTGCGCACTCAAAGGCCGCAGCTTTAGCCTTTAAGCTTCTTTTTTTTTTCTCTTACTATGGGGGGCTAGTTGTTTATAGTTAGTTAGTTAGCTCGAAGCCTCTCCTGCGTCTGCGGTTGCAACCGATTCGATTTCCAGGTTGGTTGGTTGGTTGGTTGTTTGCACTGATGGGAATAAACCTTTATGCATAAATAGCTTTGCGTGACTTGCACTTTGTGCAGCTAAATGTGACAACCTGCTGTTGCTGTTGCTGTTGATGTTGATGTTGCTGTTGCTGTTGATGTGCGTTGTGATCTCTGACCAACCTGAAATTACCGGGAGGCCAGGGTAGATCCAGTTGTTTTGTGGTGAGTTGTGTGGTTGTGGAGAGGAGGGCGCATGATATAAAGAGCTTGGGGTTTGCTCCCCTCTGAATACAAAAGTGACAACTTGGGGAACTAGGCAGTGCCTCTGCATAGCATAGATCTTCCTGTCCTTTCTTTCTTGTCTAGTGGTGAGATCTGGTGAGGATTTTCTCCTCAAGATATCCCTTTTTTCGGTTTGTAGTTTGTTCTGAACATCTGTAGTTTGGCATGTCCTTCCATGATCTAGCTGTTCGTTCTGAAGATCCATAAAGATATTGATACTTACTGTCTTGGGAACTGGGGGATATCATTTCCCTTTCACCCATATGTGAATCAAAGTTTATTTTATTTAGTTTACCTCTTAGATTCGTCATTTCGCTTGCTGTCGATTTTGCCTTCTTTAGCTGTGTAGTCATGATAGAATCGTTGCAGCAATGGATTTGGTATTGTGTCCTTAGGACTTAGGAGTAGTTTGACCGTCTTCCCAGAACTACTGCTGTTTCTTTCTCCATTCAGTTGGGTGGTAGCTTTCTCAGAACCAGAGTTCACAGTCCTGCACTCTTCACATGTTTATTTCGGGATCCTGGCTGGTGTGCTTGTGATCTGCGAAACACGGCTGCTTATGTTCACTCAGAAATGCGCACATTCCTTTCAGTTTACTACTCTGCAATCTCCCTCAAAATCTAATTTATATGGCAGGTTTGCAGTAAGCAGGAAAGATGGTGAAGATCTGCTGCATCGGAGCTGGATATGTCGGCGGCCCAACCATGGCTGTCATTGCCCTCAAATGCCCAGCAATTGAGGTGGTGGTTGTTGACATCTCCAAGCCTCGCGTTGATGCCTGGAACAGCGACCAGCTCCCAATCTACGAGCCCGGTCTTGATGAGGTTGTGAAGGAATGCAGGGGCAGGAACCTCTTCTTCAGTACGGACGTCGAGAAGCATGTCGCTGAGGCAGACATCATTTTTGTGTCTGTCAACACCCCTACCAAGACCCGTGGACTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAGAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACCGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCCAACCCAGAATTCCTTGCAGAGGGCACTGCGATTGAAGATCTCTTCAAGCCAGACAGAGTGCTCATTGGTGGCCGGGAGACTCCTGAAGGAAAGAAGGCTGTTCAGGCTCTCAAGGAAGTTTATGCCCATTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCTGCTGAGCTCTCCAAGCTCGCAGCCAATGCGTTCTTGGCGCAGAGAATCTCCTCTGTGAATGCCATCTCTGCACTATGTGAGGCGACTGGTGCCAATGTGTCCGAGGTGGCCTATGCTGTGGGGAAAGACACCAGAATCGGCCCCAAGTTCTTGAATGCCAGTGTCGGCTTTGGTGGCTCCTGTTTCCAGAAGGACATCCTGAACCTCGTGTACATCTGCGAGTGCAATGGCCTTCCTGAGGTTGCCAACTACTGGAAGCAGGTCATCAAGATTAATGACTACCAGAAGAGCCGGTTTGTCAACCGTGTTGTGGCCTCCATGTTCAACACTGTCTCTGGCAAGAAGATTGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCTGCCATTGATGTGTGCCATGGCCTGTTGGGTGACAAGGCTCAAATCAGCATCTACGACCCACAGGTAACTGAAGATCAGATCCAGCGGGACCTTTCCATGGCCAAGTTTGATTGGGACCACCCAAGGCACCTGCAGCCAACTAGCCCCACGGCTTTTAAGCAGGTGAGTGTGGTCTGGGATGCGTATGAGGCCACCAAGGGAGCCCATGGACTGTGCATCCTCACTGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAGGATCTTTGACAACATGCAGAAACCTGCATTTGTCTTCGATGGGCGCAATGTGGTCGATCCTGAGAAGCTCAGGGAGATTGGCTTCATTGTCTACTCTATCGGCAAGCCGCTTGATGCATGGCTCAAAGACATGCCCGCGGTTGCATAATTCTGAATCCCCACCTGGAGCGCTCTGCTGGAGCTGAAGAAATTCGATAAGGAAACAGAACCGGTCGACCACTATTTTCTGTAGTCTGTTTTTGCAGGAGACAGCTACCATTTTCTCAGTCGTAAGTTGAATATCTGTTAGTATCTTTGTCGAAGTTTTCATGTTTGCAGCTTTGCGCCTTTGTAGATCTGAAATCCTCAAGCCTCTGATCTAAGAGTGCCACCCAAAATACCTCTTGTATCACATGAACTTCTTATAGCCGATTTATTCTCGTATTTCAAAGACGCTACAGATT

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CDS seq

ATGGTGAAGATCTGCTGCATCGGAGCTGGATATGTCGGCGGCCCAACCATGGCTGTCATTGCCCTCAAATGCCCAGCAATTGAGGTGGTGGTTGTTGACATCTCCAAGCCTCGCGTTGATGCCTGGAACAGCGACCAGCTCCCAATCTACGAGCCCGGTCTTGATGAGGTTGTGAAGGAATGCAGGGGCAGGAACCTCTTCTTCAGTACGGACGTCGAGAAGCATGTCGCTGAGGCAGACATCATTTTTGTGTCTGTCAACACCCCTACCAAGACCCGTGGACTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAGAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACCGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCCAACCCAGAATTCCTTGCAGAGGGCACTGCGATTGAAGATCTCTTCAAGCCAGACAGAGTGCTCATTGGTGGCCGGGAGACTCCTGAAGGAAAGAAGGCTGTTCAGGCTCTCAAGGAAGTTTATGCCCATTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCTGCTGAGCTCTCCAAGCTCGCAGCCAATGCGTTCTTGGCGCAGAGAATCTCCTCTGTGAATGCCATCTCTGCACTATGTGAGGCGACTGGTGCCAATGTGTCCGAGGTGGCCTATGCTGTGGGGAAAGACACCAGAATCGGCCCCAAGTTCTTGAATGCCAGTGTCGGCTTTGGTGGCTCCTGTTTCCAGAAGGACATCCTGAACCTCGTGTACATCTGCGAGTGCAATGGCCTTCCTGAGGTTGCCAACTACTGGAAGCAGGTCATCAAGATTAATGACTACCAGAAGAGCCGGTTTGTCAACCGTGTTGTGGCCTCCATGTTCAACACTGTCTCTGGCAAGAAGATTGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCTGCCATTGATGTGTGCCATGGCCTGTTGGGTGACAAGGCTCAAATCAGCATCTACGACCCACAGGTAACTGAAGATCAGATCCAGCGGGACCTTTCCATGGCCAAGTTTGATTGGGACCACCCAAGGCACCTGCAGCCAACTAGCCCCACGGCTTTTAAGCAGGTGAGTGTGGTCTGGGATGCGTATGAGGCCACCAAGGGAGCCCATGGACTGTGCATCCTCACTGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAGGATCTTTGACAACATGCAGAAACCTGCATTTGTCTTCGATGGGCGCAATGTGGTCGATCCTGAGAAGCTCAGGGAGATTGGCTTCATTGTCTACTCTATCGGCAAGCCGCTTGATGCATGGCTCAAAGACATGCCCGCGGTTGCATAA

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Protein seq

MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA

Function UDP-glucose 6-dehydrogenase 5 [UniProtKB/Swiss-Prot:Q2QS13]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_12g0443600 OsNip_12t0443600-01 Chr12 14893170 14896144 + RAP2018-11-26
CDS seq

ATGGTGAAGATCTGCTGCATCGGAGCTGGATATGTCGGCGGCCCAACCATGGCTGTCATTGCCCTCAAATGCCCAGCAATTGAGGTGGTGGTTGTTGACATCTCCAAGCCTCGCGTTGATGCCTGGAACAGCGACCAGCTCCCAATCTACGAGCCCGGTCTTGATGAGGTTGTGAAGGAATGCAGGGGCAGGAACCTCTTCTTCAGTACGGACGTCGAGAAGCATGTCGCTGAGGCAGACATCATTTTTGTGTCTGTCAACACCCCTACCAAGACCCGTGGACTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAGAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACCGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCCAACCCAGAATTCCTTGCAGAGGGCACTGCGATTGAAGATCTCTTCAAGCCAGACAGAGTGCTCATTGGTGGCCGGGAGACTCCTGAAGGAAAGAAGGCTGTTCAGGCTCTCAAGGAAGTTTATGCCCATTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCTGCTGAGCTCTCCAAGCTCGCAGCCAATGCGTTCTTGGCGCAGAGAATCTCCTCTGTGAATGCCATCTCTGCACTATGTGAGGCGACTGGTGCCAATGTGTCCGAGGTGGCCTATGCTGTGGGGAAAGACACCAGAATCGGCCCCAAGTTCTTGAATGCCAGTGTCGGCTTTGGTGGCTCCTGTTTCCAGAAGGACATCCTGAACCTCGTGTACATCTGCGAGTGCAATGGCCTTCCTGAGGTTGCCAACTACTGGAAGCAGGTCATCAAGATTAATGACTACCAGAAGAGCCGGTTTGTCAACCGTGTTGTGGCCTCCATGTTCAACACTGTCTCTGGCAAGAAGATTGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCTGCCATTGATGTGTGCCATGGCCTGTTGGGTGACAAGGCTCAAATCAGCATCTACGACCCACAGGTAACTGAAGATCAGATCCAGCGGGACCTTTCCATGGCCAAGTTTGATTGGGACCACCCAAGGCACCTGCAGCCAACTAGCCCCACGGCTTTTAAGCAGGTGAGTGTGGTCTGGGATGCGTATGAGGCCACCAAGGGAGCCCATGGACTGTGCATCCTCACTGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAGGATCTTTGACAACATGCAGAAACCTGCATTTGTCTTCGATGGGCGCAATGTGGTCGATCCTGAGAAGCTCAGGGAGATTGGCTTCATTGTCTACTCTATCGGCAAGCCGCTTGATGCATGGCTCAAAGACATGCCCGCGGTTGCATAA

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Protein seq

MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA

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Gene Transcript Chromosome Start End Strand Source
OsNip_12g0443600 OsNip_12t0443600-02 Chr12 14893911 14896224 + RAP2018-11-26
CDS seq

ATGGTGAAGATCTGCTGCATCGGAGCTGGATATGTCGGCGGCCCAACCATGGCTGTCATTGCCCTCAAATGCCCAGCAATTGAGGTGGTGGTTGTTGACATCTCCAAGCCTCGCGTTGATGCCTGGAACAGCGACCAGCTCCCAATCTACGAGCCCGGTCTTGATGAGGTTGTGAAGGAATGCAGGGGCAGGAACCTCTTCTTCAGTACGGACGTCGAGAAGCATGTCGCTGAGGCAGACATCATTTTTGTGTCTGTCAACACCCCTACCAAGACCCGTGGACTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAGAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACCGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCCAACCCAGAATTCCTTGCAGAGGGCACTGCGATTGAAGATCTCTTCAAGCCAGACAGAGTGCTCATTGGTGGCCGGGAGACTCCTGAAGGAAAGAAGGCTGTTCAGGCTCTCAAGGAAGTTTATGCCCATTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCTGCTGAGCTCTCCAAGCTCGCAGCCAATGCGTTCTTGGCGCAGAGAATCTCCTCTGTGAATGCCATCTCTGCACTATGTGAGGCGACTGGTGCCAATGTGTCCGAGGTGGCCTATGCTGTGGGGAAAGACACCAGAATCGGCCCCAAGTTCTTGAATGCCAGTGTCGGCTTTGGTGGCTCCTGTTTCCAGAAGGACATCCTGAACCTCGTGTACATCTGCGAGTGCAATGGCCTTCCTGAGGTTGCCAACTACTGGAAGCAGGTCATCAAGATTAATGACTACCAGAAGAGCCGGTTTGTCAACCGTGTTGTGGCCTCCATGTTCAACACTGTCTCTGGCAAGAAGATTGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCTGCCATTGATGTGTGCCATGGCCTGTTGGGTGACAAGGCTCAAATCAGCATCTACGACCCACAGGTAACTGAAGATCAGATCCAGCGGGACCTTTCCATGGCCAAGTTTGATTGGGACCACCCAAGGCACCTGCAGCCAACTAGCCCCACGGCTTTTAAGCAGGTGAGTGTGGTCTGGGATGCGTATGAGGCCACCAAGGGAGCCCATGGACTGTGCATCCTCACTGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAGGATCTTTGACAACATGCAGAAACCTGCATTTGTCTTCGATGGGCGCAATGTGGTCGATCCTGAGAAGCTCAGGGAGATTGGCTTCATTGTCTACTCTATCGGCAAGCCGCTTGATGCATGGCTCAAAGACATGCCCGCGGTTGCATAA

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Protein seq

MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA

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Gene Transcript Chromosome Start End Strand Source
OsNip_12g0443600 OsNip_12t0443600-03 Chr12 14893711 14896294 + IsoSeq
CDS seq

ATGGCCTTCCTGAGGTTGCCAACTACTGGAAGCAGGTCATCAAGATTAATGACTACCAGAAGAGCCGGTTTGTCAACCGTGTTGTGGCCTCCATGTTCAACACTGTCTCTGGCAAGAAGATTGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCTGCCATTGATGTGTGCCATGGCCTGTTGGGTGACAAGGCTCAAATCAGCATCTACGACCCAC

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Protein seq

MAFLRLPTTGSRSSRLMTTRRAGLSTVLWPPCSTLSLARRLPSLALRSRRTPVTPGRHLPLMCAMACWVTRLKSASTTH

OsNip_12t0443600-03OsNip_12t0443600-02OsNip_12t0443600-01AS14893070 bp14893500 bp14894000 bp14894500 bp14895000 bp14895500 bp14896000 bp14896500 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
AF Chr12 14893170 14894537 + OsNip_12t0443600-01 OsNip_12t0443600-01,OsNip_12t0443600-03 All
AF Chr12 14893170 14894537 + OsNip_12t0443600-01 OsNip_12t0443600-01,OsNip_12t0443600-02 All
AF Chr12 14893711 14894537 + OsNip_12t0443600-03 OsNip_12t0443600-03,OsNip_12t0443600-02 All

Expression

Leaf Root Panicle
FPKM 0.790061 0.462393 11.757385

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0443500 RBH 0.711759 0.654356 14.958443
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g25700 RBH 0.499759 0.278541 2.713725
Nipponbare | IRGSP 1.0 | RAP-db Os12g0443600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0011900 RBH 0.504932 42.729195 17.428970
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0012050 RBH 0.690026 21.019382 2.171049
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0011980 RBH 0.435068 59.654335 18.599941
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0011800 RBH 0.059250 17.997066 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0011540 RBH 6.604917 104.097580 19.306162
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0209900 RBH 12.202603 15.4854615 19.753789
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0011750 RBH 0.250234 20.105383 1.792230
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0234900 RBH 13.128145 14.973055 32.676535
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0011540 RBH 0.279834 0.102200 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0011900 RBH 1.093683 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0011800 RBH 14.834575 95.586395 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0011780 RBH 0.880455 0.0 4.171639
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0011960 RBH 0.148980 22.004997 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G011710 RBH 0.277613 237.624069 21.377926
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0011510 RBH 1.126179 60.529602 12.944608
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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