Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0011980 | OGI:12041100 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:15365444-15368532 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcagtagtaagctcccagtccaaacatttctcctcctcggtctggagccgctcccccctccccgccgccgctgctctcgacgccgacgccgacgaggcagctaggccggcgacgaacctcgatctcgatccgctcgccgccgtccgtcgccgatccgcgcgccgacaccgacaccgaccttgatcctgatccgcgctccccgcgacgtacgccacggtgggctcccgatctgaccccatcctccatccaccctcctcactctccgccgtcgtagtatatctcaggagggctaccagctgagccgagggaggagaactggatgcctcgtgcgcactcaaaggccgcagctttagcctttaagcttcttttttttttctcttactatggggggctagttgtttatagttagttagttagctcgaagcctctcctgcgtctgcggttgcaaccgattcgatttccaggttggttggttggttggttgtttgcactgatgggaataaacctttatgcataaatagctttgcgtgacttgcactttgtgcagctaaatgtgacaacctgctgttgctgttgctgttgatgttgatgttgctgttgctgttgatgtgcgttgtgatctctgaccaacctgaaattaccgggaggccagggtagatccagttgttttgtggtgagttgtgtggttgtggagaggagggcgcatgatataaagagcttggggtttgctcccctctgaatacaaaagtgacaacttggggaactaggcagtgcctctgcatagcatagatcttcctgtcctttctttcttgtctagtggtgagatctggtgaggattttctcctcaagatatcccttttttcggtttgtagtttgttctgaacatctgtagtttggcatgtccttccatgatctagctgttcgttctgaagatccataaagatattgatacttactgtcttgggaactgggggatatcatttccctttcacccatatgtgaatcaaagtttattttatttagtttacctcttagattcgtcatttcgcttgctgtcgattttgccttctttagctgtgtagtcatgatagaatcgttgcagcaatggatttggtattgtgtccttaggacttaggagtagtttgaccgtcttcccagaactactgctgtttctttctccattcagttgggtggtagctttctcagaaccagagttcacagtcctgcactcttcacatgtttatttcgggatcctggctggtgtgcttgtgatctgcgaaacacggctgcttatgttcactcagaaatgcgcacattcctttcagtttactactctgcaatctccctcaaaatctaatttatatggcaggtttgcagtaagcaggaaagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtcattgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgttgatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaaggaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggcagacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaaggctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtctgacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaagatcttgacccacaacagcaagggcatcaactaccagatcctctccaacccagaattccttgcagagggcactgcgattgaagatctcttcaagccagacagagtgctcattggtggccgggagactcctgaaggaaagaaggctgttcaggctctcaaggaagtttatgcccattgggttcctgaggacaggattatcaccaccaacctgtggtctgctgagctctccaagctcgcagccaatgcgttcttggcgcagagaatctcctctgtgaatgccatctctgcactatgtgaggcgactggtgccaatgtgtccgaggtggcctatgctgtggggaaagacaccagaatcggccccaagttcttgaatgccagtgtcggctttggtggctcctgtttccagaaggacatcctgaacctcgtgtacatctgcgagtgcaatggccttcctgaggttgccaactactggaagcaggtcatcaagattaatgactaccagaagagccggtttgtcaaccgtgttgtggcctccatgttcaacactgtctctggcaagaagattgccgtccttggctttgcgttcaagaaggacaccggtgacaccagggagacacctgccattgatgtgtgccatggcctgttgggtgacaaggctcaaatcagcatctacgacccacaggtaactgaagatcagatccagcgggacctttccatggccaagtttgattgggaccacccaaggcacctgcagccaactagccccacggcttttaagcaggtgagtgtggtctgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggacgagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtcttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctactctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataattctgaatccccacctggagcgctctgctggagctgaagaaattcgataaggaaacagaaccggtcgaccactattttctgtagtctgtttttgcaggagacagctaccattttctcagtcgtaagttgaatatctgttagtatctttgtcgaagttttcatgtttgcagctttgcgcctttgtagatctgaaatcctcaagcctctgatctaagagtgccacccaaaatacctcttgtatcacatgaacttctta
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| CDS seq | atggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtcattgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgttgatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaaggaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggcagacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaaggctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtctgacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaagatcttgacccacaacagcaagggcatcaactaccagatcctctccaacccagaattccttgcagagggcactgcgattgaagatctcttcaagccagacagagtgctcattggtggccgggagactcctgaaggaaagaaggctgttcaggctctcaaggaagtttatgcccattgggttcctgaggacaggattatcaccaccaacctgtggtctgctgagctctccaagctcgcagccaatgcgttcttggcgcagagaatctcctctgtgaatgccatctctgcactatgtgaggcgactggtgccaatgtgtccgaggtggcctatgctgtggggaaagacaccagaatcggccccaagttcttgaatgccagtgtcggctttggtggctcctgtttccagaaggacatcctgaacctcgtgtacatctgcgagtgcaatggccttcctgaggttgccaactactggaagcaggtcatcaagattaatgactaccagaagagccggtttgtcaaccgtgttgtggcctccatgttcaacactgtctctggcaagaagattgccgtccttggctttgcgttcaagaaggacaccggtgacaccagggagacacctgccattgatgtgtgccatggcctgttgggtgacaaggctcaaatcagcatctacgacccacaggtaactgaagatcagatccagcgggacctttccatggccaagtttgattgggaccacccaaggcacctgcagccaactagccccacggcttttaagcaggtgagtgtggtctgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggacgagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtcttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctactctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataa
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA |
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| Function | UDP-glucose 6-dehydrogenase 5 [UniProtKB/Swiss-Prot:Q2QS13] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0011980 | OsCMeo_12g0011980.03 | Chr12 | 15366202 | 15368532 | + | NAM | ||
| CDS seq | atggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtcattgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgttgatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaaggaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggcagacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaaggctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtctgacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaagatcttgacccacaacagcaagggcatcaactaccagatcctctccaacccagaattccttgcagagggcactgcgattgaagatctcttcaagccagacagagtgctcattggtggccgggagactcctgaaggaaagaaggctgttcaggctctcaaggaagtttatgcccattgggttcctgaggacaggattatcaccaccaacctgtggtctgctgagctctccaagctcgcagccaatgcgttcttggcgcagagaatctcctctgtgaatgccatctctgcactatgtgaggcgactggtgccaatgtgtccgaggtggcctatgctgtggggaaagacaccagaatcggccccaagttcttgaatgccagtgtcggctttggtggctcctgtttccagaaggacatcctgaacctcgtgtacatctgcgagtgcaatggccttcctgaggttgccaactactggaagcaggtcatcaagattaatgactaccagaagagccggtttgtcaaccgtgttgtggcctccatgttcaacactgtctctggcaagaagattgccgtccttggctttgcgttcaagaaggacaccggtgacaccagggagacacctgccattgatgtgtgccatggcctgttgggtgacaaggctcaaatcagcatctacgacccacaggtaactgaagatcagatccagcgggacctttccatggccaagtttgattgggaccacccaaggcacctgcagccaactagccccacggcttttaagcaggtgagtgtggtctgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggacgagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtcttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctactctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataa
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0011980 | OsCMeo_12g0011980.01 | Chr12 | 15365444 | 15368532 | + | NAM | ||
| CDS seq | atggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtcattgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgttgatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaaggaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggcagacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaaggctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtctgacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaagatcttgacccacaacagcaagggcatcaactaccagatcctctccaacccagaattccttgcagagggcactgcgattgaagatctcttcaagccagacagagtgctcattggtggccgggagactcctgaaggaaagaaggctgttcaggctctcaaggaagtttatgcccattgggttcctgaggacaggattatcaccaccaacctgtggtctgctgagctctccaagctcgcagccaatgcgttcttggcgcagagaatctcctctgtgaatgccatctctgcactatgtgaggcgactggtgccaatgtgtccgaggtggcctatgctgtggggaaagacaccagaatcggccccaagttcttgaatgccagtgtcggctttggtggctcctgtttccagaaggacatcctgaacctcgtgtacatctgcgagtgcaatggccttcctgaggttgccaactactggaagcaggtcatcaagattaatgactaccagaagagccggtttgtcaaccgtgttgtggcctccatgttcaacactgtctctggcaagaagattgccgtccttggctttgcgttcaagaaggacaccggtgacaccagggagacacctgccattgatgtgtgccatggcctgttgggtgacaaggctcaaatcagcatctacgacccacaggtaactgaagatcagatccagcgggacctttccatggccaagtttgattgggaccacccaaggcacctgcagccaactagccccacggcttttaagcaggtgagtgtggtctgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggacgagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtcttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctactctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataa
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0011980 | OsCMeo_12g0011980.02 | Chr12 | 15365444 | 15368532 | + | NAM | ||
| CDS seq | atggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtcattgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgttgatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaaggaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggcagacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaaggctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtctgacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaagatcttgacccacaacagcaagggcatcaactaccagatcctctccaacccagaattccttgcagagggcactgcgattgaagatctcttcaagccagacagagtgctcattggtggccgggagactcctgaaggaaagaaggctgttcaggctctcaaggaagtttatgcccattgggttcctgaggacaggattatcaccaccaacctgtggtctgctgagctctccaagctcgcagccaatgcgttcttggcgcagagaatctcctctgtgaatgccatctctgcactatgtgaggcgactggtgccaatgtgtccgaggtggcctatgctgtggggaaagacaccagaatcggccccaagttcttgaatgccagtgtcggctttggtggctcctgtttccagaaggacatcctgaacctcgtgtacatctgcgagtgcaatggccttcctgaggttgccaactactggaagcaggtcatcaagattaatgactaccagaagagccggtttgtcaaccgtgttgtggcctccatgttcaacactgtctctggcaagaagattgccgtccttggctttgcgttcaagaaggacaccggtgacaccagggagacacctgccattgatgtgtgccatggcctgttgggtgacaaggctcaaatcagcatctacgacccacaggtaactgaagatcagatccagcgggacctttccatggccaagtttgattgggaccacccaaggcacctgcagccaactagccccacggcttttaagcaggtgagtgtggtctgggatgcgtatgaggccaccaagggagcccatggactgtgcatcctcactgagtgggacgagttcaagaccttggactaccagaggatctttgacaacatgcagaaacctgcatttgtcttcgatgggcgcaatgtggtcgatcctgagaagctcagggagattggcttcattgtctactctatcggcaagccgcttgatgcatggctcaaagacatgcccgcggttgcataa
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRVDAWNSDQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVSEVAYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLSMAKFDWDHPRHLQPTSPTAFKQVSVVWDAYEATKGAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 15365660 | 15366822 | + | OsCMeo_12g0011980.02 | OsCMeo_12g0011980.01,OsCMeo_12g0011980.02 | All |
| AF | Chr12 | 15365444 | 15366814 | + | OsCMeo_12g0011980.02 | OsCMeo_12g0011980.03,OsCMeo_12g0011980.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.435068 | 59.654335 | 18.599941 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0443600 | RBH | 0.790061 | 0.462393 | 11.757385 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g25700 | RBH | 0.499759 | 0.278541 | 2.713725 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0443600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0011900 | RBH | 0.504932 | 42.729195 | 17.428970 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012050 | RBH | 0.690026 | 21.019382 | 2.171049 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011970 | RBH | 0.209630 | 318.917114 | 31.127602 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011800 | SBH | 0.059250 | 17.997066 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011540 | RBH | 6.604917 | 104.097580 | 19.306162 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0209900 | RBH | 12.202603 | 15.4854615 | 19.753789 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011750 | SBH | 0.250234 | 20.105383 | 1.792230 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0234900 | RBH | 13.128145 | 14.973055 | 32.676535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011540 | RBH | 0.279834 | 0.102200 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011900 | RBH | 1.093683 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011800 | RBH | 14.834575 | 95.586395 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011780 | RBH | 0.880455 | 0.0 | 4.171639 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011960 | RBH | 0.148980 | 22.004997 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011710 | SBH | 0.277613 | 237.624069 | 21.377926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011510 | RBH | 1.126179 | 60.529602 | 12.944608 |
