Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0443500 | OGI:12041120 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:14887908-14890425 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATATCGTAGGCAGCTTCCCTCTGCATACAAGAGGCTGCCTCCCATTTCTCTTCTCTGTCGGTGTTCTCCTCAAGATCTGTCTTAAGTTCTTGAGATCTGGTAAGATTCTTCATGATCTCGTGCATACTTCTGCGGTTGATCTGTAGTTCGAGTATGGACCATGCAAGCTGTGTGGTTTCCTGTTTTAGTTGTTCATCTCAAGATACTTAATGCTGTGAATCTCTGAATTTGCTTGAGATTCATGCCTTGCACATATATGATCCCTTGCTAGATTCAGTAACTTGATTTACTCTGTGTTTGTGCCATTAAATTTGTTTCCTTTCACCCCTGTTTGGAACTATTTCCTTTTATTTTACTGCTTGCTACAGTGCTGTCGTCGTTGATGAATTAGAGGCATTATTATTCTGCTCGTAACTTGAATTCGTTAGCTAAACTTTTTGTTAGTGTTGTTGTGGTGACGGATCTCCATCTGTCATTCTCCTGATGCAGTTTGACACCAATAGGCACATATTATTATCATGAACTGCTCATTGGTTTATCAGTTTAATTGTGTTCCTCAGAACCTGACTAAATGTATTTCACAGCCTAGCAGTCTTTGCATGTTTCTTTTGACATATTGGTCATTGTGCTTGTAAACTGTGTATCTAGATAGCTTCTATTAACTCAAAAATGCTGCTTACAAGTTCTGATCTATATAATTACTTTTAGTGCTTATTCTTCAATCTCCTGAAAATCAGTTTTCATTATCACAGTTTCAGAACTAAGCTGAGAAGATGGTGAAGATCTGCTGCATTGGAGCTGGCTATGTCGGCGGCCCAACCATGGCCGTCATTGCCCTCAAATGCCCAGCAATCGAGGTGGTGGTTGTTGACATTTCCAAGCCTCGCATTGATGCCTGGAACAGCGAACAGCTCCCGATCTACGAGCCTGGCCTCGATGAGGTCGTGAAGGAGTGCAGAGGCAGGAACCTCTTCTTCAGCACTGATGTGGAGAAGCATGTCGCCGAGGCGAACATCATCTTTGTATCTGTCAACACCCCCACCAAGACCCGTGGTCTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAAAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACTGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCAAACCCGGAGTTCCTCGCGGAGGGCACTGCGATCGAAGATCTGTTCAAGCCTGACAGAGTGCTCATTGGTGGCCGGGAGACCCCTGAGGGCAAGAAGGCTGTTCAGGCTCTCAAGGAGGTGTACGCCCACTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCCGCTGAGCTCTCCAAGCTCGCAGCCAACGCGTTCTTGGCACAGAGGATCTCCTCTGTGAATGCCATCTCCGCCCTATGCGAGGCGACTGGTGCCAATGTGGCCGAGGTTGCTTACTCTGTGGGAAAGGACTCCAGGATTGGCCCCAAGTTCCTGAACGCCAGTGTTGGCTTTGGTGGATCCTGTTTCCAGAAGGACATCCTGAACCTTGTGTACATCTGCGAGTGCAATGGCCTTCCCGAGGTGGCCAACTACTGGAAGCAGGTCATCAAGATCAACGACTACCAGAAGAGCCGGTTTGTCAACCGCGTTGTGTCCTCCATGTTCAACACAGTCTCCGGCAAGAAGATCGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCAGCCATTGATGTGTGCCACGGTCTGTTGGGTGACAAGGCACAGATCAGCATCTACGATCCACAGGTCACCGAGGACCAGATCCAGCGGGACCTCGCCATGAGCAAGTTCGACTGGGACCACCCGATGCACCTGCAGCCGACCAGCCCCACTGCATTCAAGCAGGTGAGCGTGGTGTGGGATGCATATGAGGCCACCAAGGGGGCCCATGGTGTCTGCATCCTCACCGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAAGATCTTTGACAACATGCAGAAGCCTGCATTCGTCTTTGATGGGCGCAATGTGGTCGATGCCGAGAAGCTCAGGGAGATTGGGTTCATCGTCTACTCCATCGGCAAGCCGCTTGATGCCTGGCTCAAGGACATGCCCGCGGTTGCATAATAATTTTCCATATTCCACACCTGAACCTCATAGCTCTCTACACTCTGCTGGTGCTGAAGAGAGTCTGCGTCGAAGAGGAATTTGGTTGACCATCATTTTTTATAGCTCGTTGTTCGTCTTTACATACAGGAGAGGCTACCATTTTGTCAAACAGAAAGTTGATTTCTGTTAGTATCTTTGTTCAAGTTTTTCTTGTGTTGCACCATTGTAGATCTGAAATCTTCAGGCCTCTACCGTTTGAGTGCCACCCTCAATCTTGTATGATGACATGAATTCTTATAGCCGATTTATTCTTCAAATGT
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| CDS seq | ATGGTGAAGATCTGCTGCATTGGAGCTGGCTATGTCGGCGGCCCAACCATGGCCGTCATTGCCCTCAAATGCCCAGCAATCGAGGTGGTGGTTGTTGACATTTCCAAGCCTCGCATTGATGCCTGGAACAGCGAACAGCTCCCGATCTACGAGCCTGGCCTCGATGAGGTCGTGAAGGAGTGCAGAGGCAGGAACCTCTTCTTCAGCACTGATGTGGAGAAGCATGTCGCCGAGGCGAACATCATCTTTGTATCTGTCAACACCCCCACCAAGACCCGTGGTCTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAAAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACTGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCAAACCCGGAGTTCCTCGCGGAGGGCACTGCGATCGAAGATCTGTTCAAGCCTGACAGAGTGCTCATTGGTGGCCGGGAGACCCCTGAGGGCAAGAAGGCTGTTCAGGCTCTCAAGGAGGTGTACGCCCACTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCCGCTGAGCTCTCCAAGCTCGCAGCCAACGCGTTCTTGGCACAGAGGATCTCCTCTGTGAATGCCATCTCCGCCCTATGCGAGGCGACTGGTGCCAATGTGGCCGAGGTTGCTTACTCTGTGGGAAAGGACTCCAGGATTGGCCCCAAGTTCCTGAACGCCAGTGTTGGCTTTGGTGGATCCTGTTTCCAGAAGGACATCCTGAACCTTGTGTACATCTGCGAGTGCAATGGCCTTCCCGAGGTGGCCAACTACTGGAAGCAGGTCATCAAGATCAACGACTACCAGAAGAGCCGGTTTGTCAACCGCGTTGTGTCCTCCATGTTCAACACAGTCTCCGGCAAGAAGATCGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCAGCCATTGATGTGTGCCACGGTCTGTTGGGTGACAAGGCACAGATCAGCATCTACGATCCACAGGTCACCGAGGACCAGATCCAGCGGGACCTCGCCATGAGCAAGTTCGACTGGGACCACCCGATGCACCTGCAGCCGACCAGCCCCACTGCATTCAAGCAGGTGAGCGTGGTGTGGGATGCATATGAGGCCACCAAGGGGGCCCATGGTGTCTGCATCCTCACCGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAAGATCTTTGACAACATGCAGAAGCCTGCATTCGTCTTTGATGGGCGCAATGTGGTCGATGCCGAGAAGCTCAGGGAGATTGGGTTCATCGTCTACTCCATCGGCAAGCCGCTTGATGCCTGGCTCAAGGACATGCCCGCGGTTGCATAA
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEANIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVAEVAYSVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLAMSKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA |
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| Function | UDP-glucose 6-dehydrogenase 4 [UniProtKB/Swiss-Prot:Q2QS14] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0443500 | OsNip_12t0443500-01 | Chr12 | 14887908 | 14890425 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGAAGATCTGCTGCATTGGAGCTGGCTATGTCGGCGGCCCAACCATGGCCGTCATTGCCCTCAAATGCCCAGCAATCGAGGTGGTGGTTGTTGACATTTCCAAGCCTCGCATTGATGCCTGGAACAGCGAACAGCTCCCGATCTACGAGCCTGGCCTCGATGAGGTCGTGAAGGAGTGCAGAGGCAGGAACCTCTTCTTCAGCACTGATGTGGAGAAGCATGTCGCCGAGGCGAACATCATCTTTGTATCTGTCAACACCCCCACCAAGACCCGTGGTCTTGGAGCAGGCAAGGCTGCTGACCTCACCTACTGGGAAAGTGCTGCTCGGATGATTGCTGATGTCTCCAAGTCTGACAAGATCGTTGTTGAGAAGTCCACTGTCCCTGTCAAGACTGCAGAGGCCATTGAGAAGATCTTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTCTCAAACCCGGAGTTCCTCGCGGAGGGCACTGCGATCGAAGATCTGTTCAAGCCTGACAGAGTGCTCATTGGTGGCCGGGAGACCCCTGAGGGCAAGAAGGCTGTTCAGGCTCTCAAGGAGGTGTACGCCCACTGGGTTCCTGAGGACAGGATTATCACCACCAACCTGTGGTCCGCTGAGCTCTCCAAGCTCGCAGCCAACGCGTTCTTGGCACAGAGGATCTCCTCTGTGAATGCCATCTCCGCCCTATGCGAGGCGACTGGTGCCAATGTGGCCGAGGTTGCTTACTCTGTGGGAAAGGACTCCAGGATTGGCCCCAAGTTCCTGAACGCCAGTGTTGGCTTTGGTGGATCCTGTTTCCAGAAGGACATCCTGAACCTTGTGTACATCTGCGAGTGCAATGGCCTTCCCGAGGTGGCCAACTACTGGAAGCAGGTCATCAAGATCAACGACTACCAGAAGAGCCGGTTTGTCAACCGCGTTGTGTCCTCCATGTTCAACACAGTCTCCGGCAAGAAGATCGCCGTCCTTGGCTTTGCGTTCAAGAAGGACACCGGTGACACCAGGGAGACACCAGCCATTGATGTGTGCCACGGTCTGTTGGGTGACAAGGCACAGATCAGCATCTACGATCCACAGGTCACCGAGGACCAGATCCAGCGGGACCTCGCCATGAGCAAGTTCGACTGGGACCACCCGATGCACCTGCAGCCGACCAGCCCCACTGCATTCAAGCAGGTGAGCGTGGTGTGGGATGCATATGAGGCCACCAAGGGGGCCCATGGTGTCTGCATCCTCACCGAGTGGGACGAGTTCAAGACCTTGGACTACCAGAAGATCTTTGACAACATGCAGAAGCCTGCATTCGTCTTTGATGGGCGCAATGTGGTCGATGCCGAGAAGCTCAGGGAGATTGGGTTCATCGTCTACTCCATCGGCAAGCCGCTTGATGCCTGGCTCAAGGACATGCCCGCGGTTGCATAA
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEANIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGKKAVQALKEVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVAEVAYSVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLAMSKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKGAHGVCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.711759 | 0.654356 | 14.958443 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0443600 | RBH | 0.790061 | 0.462393 | 11.757385 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g25690 | RBH | 0.467540 | 0.438537 | 3.753006 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0443500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0011910 | RBH | 0.0 | 87.496239 | 29.739511 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012060 | RBH | 0.0 | 79.853172 | 4.915662 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011970 | RBH | 0.209630 | 318.917114 | 31.127602 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011800 | SBH | 0.059250 | 17.997066 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011550 | RBH | 3.286579 | 519.631348 | 29.883224 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0210100 | RBH | 23.208069 | 31.929609 | 6.4178105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011750 | SBH | 0.250234 | 20.105383 | 1.792230 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0235000 | RBH | 26.96451 | 12.590381 | 16.930622 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011550 | RBH | 0.043397 | 2.596818 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011910 | RBH | 0.455551 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011810 | RBH | 1.822415 | 303.939636 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011790 | RBH | 0.868536 | 0.0 | 3.946808 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011970 | RBH | 0.061847 | 184.487274 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011710 | SBH | 0.277613 | 237.624069 | 21.377926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011520 | RBH | 0.248041 | 281.733246 | 17.747097 |
