Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0203500 | OGI:12019490 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:5415946-5417674 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAGCTGGCACGATGGCCATGGGTGGCATCCGGTGTCCCGTCTGCTTCGCCGCCATGGCCGCCGGCCAAGCCATCTTCACCGCCGAGTGCTCCCACACCTTCCACCTCCGCTGCGTCCCCGGCGGCGCCGCCGCCTGCCCCGTCTGCGCCACGCCATGGCGCGACGCCCCGTCGCCGCTCACGACCTCCTCCATCCCCGCCGCGTACGACGACGACGACCCGGTGGAGCCGGTGGCGACGGCGGCGCGCAACAGCAGCGGCGGCGGCGGCGGCGTGCTGGTGCTCAAGACGCACTGCGAGTACCCGGCGCTCTCGCGCGGCGCCGCGCGCGACGGCTTCGCCGTGCTGGTGCACGCCAAGGCGCCCGCGGCGGCGGCCGAGGCGGCGGGGCGCGCGCCGCTGGACCTGGTCACGGTGCTCGACGTCAGCACGAGCATGACCGGGGACAAGCTGGCGCTGGTGAAGCGCGCCATGGGGTTCGTCATCGACAGCCTCGGCGCCGCCGACCGCCTCAGCGTCGTCGCCTTCGCCACGCCGACGCGCGCCGGGTGCTCCGCGGCTCCGCCTGACGCGCATGTCGGAGGACGGGAAGGCGACGGCCAAGCGCGCGGTGGACGCCCTCGTCGCGAACGGGAACACCAACATCCGCGACGGCCTCGACGTGGACGCCAAGGTGCTCGACGGCCGCCGCCACACCGACGCCGTCGCCAGCGTCATCCTCCTCTCCGACGGCCAAGACAACCAGACCATGGGTTACCGTGGCCGCTTCCACATGACGGATTTCAAGGCAGCGGCGACCAGCTACGACGTCCTCGTGCCGCCGTCTTTCACGCGCGCCGGCGGCGGCGAGCGGTGCGCGCCGGTGCACGCGTTCGGGTTCGGCACCGACCACGACGCGGCGGCCATGCACAGCATCTCGGAGATCACGGGTGGCACCTTCTCCTTCATCGAGAACCTCGCCGTCATCCAGGACACGTTCGCGCGGTGCATCGGCGGGCTCCTCTCCGTCGCCGCGCAGAATGCGCGCATCTCCGTCGAGTGCCTGGACCCCGGCGTGCGCGTCCGGGCGGTCAAGTCCGGCCGCTACGAGAGCCGCATCGACGCGGAGGGCCGCGCCGCCACGGTGGACGTCGGCGAGCTCTACGCCGACGAGGAGCGCCGCTTCCTGCTCCTCCTTGACGTGCCTCGAGCCGACGGCGACGCCGCCGTCGCCACGCGCCTCGCCAGCGTGCGCTGCACGTACCGGGACACGGCGACGGAGCAGTCGGTGGACGTGGCCGGCGAGGAAGACGCCGTGGTCCTCCGCCCCGCCGTCGCGACGGGCGTGGCGCCGTCCATGGAGGTTGAGCTTGAGCGCGAGCGCGTCCGCCTCGAGGCGGCGGACGACATCGCGCTGGCGCGCGCGGCGGCCGAGCGGGGCGCCTACGGCGAGGCGGCAAGGATCCTCGACGCGAGGCGGGAGGCGCTGAGCAGGTCGGCGCCGGCGGCGTCCGGCGACGCCATGTGCGCGGCGCTGGTGGCGGAGCTGCGGGAGCTGAGCGAGCGCGTGGCGGACGAGCGGGAGTACGCGCAGACGGGGCGCGCGTGCGTGCTCGCCGGCATGAGCTCGCACGGGCAGCAGCGCGCCTCGTCGGTGCAGCTAGGGGAGCTCCGTGTACGGGTGTTCGTCCGTGTTCGCGACACCGGAGATGCAGAGGATGGAGAAGCTCTCGGTGATTTTGCGTGA
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| CDS seq | ATGGCAGCTGGCACGATGGCCATGGGTGGCATCCGGTGTCCCGTCTGCTTCGCCGCCATGGCCGCCGGCCAAGCCATCTTCACCGCCGAGTGCTCCCACACCTTCCACCTCCGCTGCGTCCCCGGCGGCGCCGCCGCCTGCCCCGTCTGCGCCACGCCATGGCGCGACGCCCCGTCGCCGCTCACGACCTCCTCCATCCCCGCCGCGTACGACGACGACGACCCGGTGGAGCCGGTGGCGACGGCGGCGCGCAACAGCAGCGGCGGCGGCGGCGGCGTGCTGGTGCTCAAGACGCACTGCGAGTACCCGGCGCTCTCGCGCGGCGCCGCGCGCGACGGCTTCGCCGTGCTGGTGCACGCCAAGGCGCCCGCGGCGGCGGCCGAGGCGGCGGGGCGCGCGCCGCTGGACCTGGTCACGGTGCTCGACGTCAGCACGAGCATGACCGGGGACAAGCTGGCGCTGGTGAAGCGCGCCATGGGGTTCGTCATCGACAGCCTCGGCGCCGCCGACCGCCTCAGCGTCGTCGCCTTCGCCACGCCGACGCGCGCCGGGTGCTCCGCGGCTCCGCCTGACGCGCATGTCGGAGGACGGGAAGGCGACGGCCAAGCGCGCGGTGGACGCCCTCGTCGCGAACGGGAACACCAACATCCGCGACGGCCTCGACGTGGACGCCAAGGTGCTCGACGGCCGCCGCCACACCGACGCCGTCGCCAGCGTCATCCTCCTCTCCGACGGCCAAGACAACCAGACCATGGGTTACCGTGGCCGCTTCCACATGACGGATTTCAAGGCAGCGGCGACCAGCTACGACGTCCTCGTGCCGCCGTCTTTCACGCGCGCCGGCGGCGGCGAGCGGTGCGCGCCGGTGCACGCAACCTCGCCGTCATCCAGGACACGTTCGCGCGGTGCATCGGCGGGCTCCTCTCCGTCGCCGCGCAGAATGCGCGCATCTCCGTCGAGTGCCTGGACCCCGGCGTGCGCGTCCGGGCGGTCAAGTCCGGCCGCTACGAGAGCCGCATCGACGCGGAGGGCCGCGCCGCCACGGTGGACGTCGGCGAGCTCTACGCCGACGAGGAGCGCCGCTTCCTGCTCCTCCTTGACGTGCCTCGAGCCGACGGCGACGCCGCCGTCGCCACGCGCCTCGCCAGCGTGCGCTGCACGTACCGGGACACGGCGACGGAGCAGTCGGTGGACGTGGCCGGCGAGGAAGACGCCGTGGTCCTCCGCCCCGCCGTCGCGACGGGCGTGGCGCCGTCCATGGAGGTTGAGCTTGAGCGCGAGCGCGTCCGCCTCGAGGCGGCGGACGACATCGCGCTGGCGCGCGCGGCGGCCGAGCGGGGCGCCTACGGCGAGGCGGCAAGGATCCTCGACGCGAGGCGGGAGGCGCTGAGCAGGTCGGCGCCGGCGGCGTCCGGCGACGCCATGTGCGCGGCGCTGGTGGCGGAGCTGCGGGAGCTGAGCGAGCGCGTGGCGGACGAGCGGGAGTACGCGCAGACGGGGCGCGCGTGCGTGCTCGCCGGCATGAGCTCGCACGGGCAGCAGCGCGCCTCGTCGGTGCAGCTAGGGGAGCTCCGTGTACGGGTGTTCGTCCGTGTTCGCGACACCGGAGATGCAGAGGATGGAGAAGCTCTCGGTGATTTTGCGTGA
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| Protein seq | MAAGTMAMGGIRCPVCFAAMAAGQAIFTAECSHTFHLRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLVLKTHCEYPALSRGAARDGFAVLVHAKAPAAAAEAAGRAPLDLVTVLDVSTSMTGDKLALVKRAMGFVIDSLGAADRLSVVAFATPTRAGCSAAPPDAHVGGREGDGQARGGRPRREREHQHPRRPRRGRQGARRPPPHRRRRQRHPPLRRPRQPDHGLPWPLPHDGFQGSGDQLRRPRAAVFHARRRRRAVRAGARNLAVIQDTFARCIGGLLSVAAQNARISVECLDPGVRVRAVKSGRYESRIDAEGRAATVDVGELYADEERRFLLLLDVPRADGDAAVATRLASVRCTYRDTATEQSVDVAGEEDAVVLRPAVATGVAPSMEVELERERVRLEAADDIALARAAAERGAYGEAARILDARREALSRSAPAASGDAMCAALVAELRELSERVADEREYAQTGRACVLAGMSSHGQQRASSVQLGELRVRVFVRVRDTGDAEDGEALGDFA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0203500 | OsNip_12t0203500-00 | Chr12 | 5415946 | 5417674 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCTGGCACGATGGCCATGGGTGGCATCCGGTGTCCCGTCTGCTTCGCCGCCATGGCCGCCGGCCAAGCCATCTTCACCGCCGAGTGCTCCCACACCTTCCACCTCCGCTGCGTCCCCGGCGGCGCCGCCGCCTGCCCCGTCTGCGCCACGCCATGGCGCGACGCCCCGTCGCCGCTCACGACCTCCTCCATCCCCGCCGCGTACGACGACGACGACCCGGTGGAGCCGGTGGCGACGGCGGCGCGCAACAGCAGCGGCGGCGGCGGCGGCGTGCTGGTGCTCAAGACGCACTGCGAGTACCCGGCGCTCTCGCGCGGCGCCGCGCGCGACGGCTTCGCCGTGCTGGTGCACGCCAAGGCGCCCGCGGCGGCGGCCGAGGCGGCGGGGCGCGCGCCGCTGGACCTGGTCACGGTGCTCGACGTCAGCACGAGCATGACCGGGGACAAGCTGGCGCTGGTGAAGCGCGCCATGGGGTTCGTCATCGACAGCCTCGGCGCCGCCGACCGCCTCAGCGTCGTCGCCTTCGCCACGCCGACGCGCGCCGGGTGCTCCGCGGCTCCGCCTGACGCGCATGTCGGAGGACGGGAAGGCGACGGCCAAGCGCGCGGTGGACGCCCTCGTCGCGAACGGGAACACCAACATCCGCGACGGCCTCGACGTGGACGCCAAGGTGCTCGACGGCCGCCGCCACACCGACGCCGTCGCCAGCGTCATCCTCCTCTCCGACGGCCAAGACAACCAGACCATGGGTTACCGTGGCCGCTTCCACATGACGGATTTCAAGGCAGCGGCGACCAGCTACGACGTCCTCGTGCCGCCGTCTTTCACGCGCGCCGGCGGCGGCGAGCGGTGCGCGCCGGTGCACGCAACCTCGCCGTCATCCAGGACACGTTCGCGCGGTGCATCGGCGGGCTCCTCTCCGTCGCCGCGCAGAATGCGCGCATCTCCGTCGAGTGCCTGGACCCCGGCGTGCGCGTCCGGGCGGTCAAGTCCGGCCGCTACGAGAGCCGCATCGACGCGGAGGGCCGCGCCGCCACGGTGGACGTCGGCGAGCTCTACGCCGACGAGGAGCGCCGCTTCCTGCTCCTCCTTGACGTGCCTCGAGCCGACGGCGACGCCGCCGTCGCCACGCGCCTCGCCAGCGTGCGCTGCACGTACCGGGACACGGCGACGGAGCAGTCGGTGGACGTGGCCGGCGAGGAAGACGCCGTGGTCCTCCGCCCCGCCGTCGCGACGGGCGTGGCGCCGTCCATGGAGGTTGAGCTTGAGCGCGAGCGCGTCCGCCTCGAGGCGGCGGACGACATCGCGCTGGCGCGCGCGGCGGCCGAGCGGGGCGCCTACGGCGAGGCGGCAAGGATCCTCGACGCGAGGCGGGAGGCGCTGAGCAGGTCGGCGCCGGCGGCGTCCGGCGACGCCATGTGCGCGGCGCTGGTGGCGGAGCTGCGGGAGCTGAGCGAGCGCGTGGCGGACGAGCGGGAGTACGCGCAGACGGGGCGCGCGTGCGTGCTCGCCGGCATGAGCTCGCACGGGCAGCAGCGCGCCTCGTCGGTGCAGCTAGGGGAGCTCCGTGTACGGGTGTTCGTCCGTGTTCGCGACACCGGAGATGCAGAGGATGGAGAAGCTCTCGGTGATTTTGCGTGA
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| Protein seq | MAAGTMAMGGIRCPVCFAAMAAGQAIFTAECSHTFHLRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLVLKTHCEYPALSRGAARDGFAVLVHAKAPAAAAEAAGRAPLDLVTVLDVSTSMTGDKLALVKRAMGFVIDSLGAADRLSVVAFATPTRAGCSAAPPDAHVGGREGDGQARGGRPRREREHQHPRRPRRGRQGARRPPPHRRRRQRHPPLRRPRQPDHGLPWPLPHDGFQGSGDQLRRPRAAVFHARRRRRAVRAGARNLAVIQDTFARCIGGLLSVAAQNARISVECLDPGVRVRAVKSGRYESRIDAEGRAATVDVGELYADEERRFLLLLDVPRADGDAAVATRLASVRCTYRDTATEQSVDVAGEEDAVVLRPAVATGVAPSMEVELERERVRLEAADDIALARAAAERGAYGEAARILDARREALSRSAPAASGDAMCAALVAELRELSERVADEREYAQTGRACVLAGMSSHGQQRASSVQLGELRVRVFVRVRDTGDAEDGEALGDFA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0203500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006450 | RBH | 0.0 | 2.627479 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006520 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006530 | RBH | 0.0 | 1.191219 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006430 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015690 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011250 | SBH | 0.0 | 0.329583 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011080 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011330 | SBH | 0.0 | 3.256437 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011260 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011450 | SBH | 0.0 | 3.575731 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006290 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0010970 | SBH | 0.0 | 0.0 | 0.0 |
