Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0006520 | OGI:12019490 | 8/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:5341970-5349667 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attactgaataacggagcaagatgatttggaaacaaaaaagaggtgatccatgtcgtgttggagatcgatcttgctcaaggaggtgatccatgggccatggcagctggcacgatggccatgggtggcatccggtgtcccgtctgcttcgccgccatggccgccggccaagccatcttcaccgccgagtgctcccacaccttccacctccgctgcgtccccggcggcgccgccgcctgccccgtctgcgccacgccatggcgcgacgccccgtcgccgctcacgacctcctccatccccgccgcgtacgacgacgacgacccggtggagccggtggcgacggcggcgcgcaacagcagcggcggcggcggcggcgtgctggtgctcaagacgcactgcgagtacccggcgctctcgcgcggcgccgcgcgcgacggcttcgccgtgctggtgcacgccaaggcgcccgcggcggcggccgaggcggcggggcgcgcgccgctggacctggtcacggtgctcgacgtcagcacgagcatgaccggggacaagctggcgctggtgaagcgcgccatggggttcgtcatcgacagcctcggcgccgccgaccgcctcagcgtcgtcgccttcgccacgccgacgcgcgccgggtgctccgcggctccgcctgacgcgcatgtcggaggacgggaaggcgacggccaagcgcgcggtggacgccctcgtcgcgaacgggaacaccaacatccgcgacggcctcgacgtggacgccaaggtgctcgacggccgccgccacaccgacgccgtcgccagcgtcatcctcctctccgacggccaagacaaccagaccatgggttaccgtggccgcttccacatgacggatttcaaggcagcggcgaccagctacgacgtcctcgtgccgccgtctttcacgcgcgccggcggcggcgagcggtgcgcgccggtgcacgcgttcgggttcggcaccgaccacgacgcggcggccatgcacagcatctcggagatcacgggtggcaccttctccttcatcgagaacctcgccgtcatccaggacacgttcgcgcggtgcatcggcgggctcctctccgtcgccgcgcagaatgcgcgcatctccgtcgagtgcctggaccccggcgtgcgcgtccgggcggtcaagtccggccgctacgagagccgcatcgacgcggagggccgcgccgccacggtggacgtcggcgagctctacgccgacgaggagcgccgcttcctgctcctccttgacgtgcctcgagccgacggcgacgccgccgtcgccacgcgcctcgccagcgtgcgctgcacgtaccgggacacggcgacggagcagtcggtggacgtggccggcgaggaagacgccgtggtcctccgccccgccgtcgcgacgggcgtggcgccgtccatggaggttgagcttgagcgcgagcgcgtccgcctcgaggcggcggacgacatcgcgctggcgcgcgcggcggccgagcggggcgcctacggcgaggcggcaaggatcctcgacgcgaggcgggaggcgctgagcaggtcggcgccggcggcgtccggcgacgccatgtgcgcggcgctggtggcggagctgcgggagctgagcgagcgcgtggcggacgagcaggagtacgcgcagacggggcgcgcgtgcgtgctcgccggcatgagctcgcacgggcagcagcgcgcctcgtcggtgcagctaggggagctccgtgtacgggtgttcgtccgtgttcgcgacaccggagatgcagaggatggagaagctctcggtgattttgcgtgaacagcagcaacaggcggcgcctccaccgccgccaccgccgccgacggcggcggcggcaagcaagtccggtggttcactgaaggcaaggttcgacgcggctgtacctcgtataatgtcgttgaggaaataccgccgtcttctgtcactcaaacgctgaaaacataggatgagagggcagcggcaaggtttcgttaagttggataatttcctgttttaattttttttttcgaacttagttttttaaaatagttttatccgaactatttaatatgcattagctcacttagcatggtgccatggtgttactaataatatcgcttgcgttgagagaacaaatggtagaatggtggatggatcatcatccatcagttgtgttttggagctgttttgttgaatctgtggtgtctgagtatttagggtgtgtttagttcacgttaaaatttaaggtttgattgaaattggaaggatgtgacgaaaatgttaaaaatttatgtgtagaaaaattttaatgtgatgaaaaagctagaaatttgaagaaaaaattaggaactaaaccacttagacagattatgctttacctgtgcacgtcgaactcctccgttctttaaccgcatcgacccgaacggctagcagcatgtctatcgtgtggcataggcacatagccgcaatactcggggtctgctttgatcctggtaaaattttataccctatcacattaaatgtttggatatatgtatagagtattaaatataaataaaaaataattaattacacaaattacgtgtaaattgtgagatgaatcttttaagcctagttgcgctatgatttgataatgtgatgctacagtaaatatttactaatgacggattaattaggcttaataaatttgtctcgcggtttacagatggattctgtaatttgttttgttattatactatatttaatattttaaatgtgtgtccatatatctaatgtgacatgctaaaatttttcaccgtggatttaaacacggtaaaccacctctgacattgctggttaaacctaggcgtggtaacgagcctaaTtttttttcctacaagatgtaagggctgcgtaaaaaggattttggcaagactAaaaaaattaaaaggctgagatagttgtgaaaagaaaggtccatggatctgacccattaccacccctagttaaatcgcgaatttttttcatttttaaatttttttcttttaatatttacagaaataatctatcggtgcaaaaaattacaaaaatagatcatgccgctctaatggagggttttcgacggcgtcgtctgccgccgtctgtgaaaattgcatttagccccttgccgcccttaatacaaagggcggcaaggggctaaatgcaattttcgcagctcaaaagagcatttggctggtactttttgcatctgggtcccttgcctcccaactagagggcggcaagggacccagatgcaaaaagtaccagccaaaaagtactatgcccgggctggcttttttgcataggggcccaagggttttcatgcaaaaaaaccctccctctcccgtctgccgtcaccgcccgttcctcccccgtttgccatgtcagcttgccgccctagtggagggcggcagggtctatttttgtaattttttgcgccgatggattatttctgtaaatattaaaagaaaaaaatttaaaaatgaaaaaaatcagaagtaaccagttcaagtaattggtcctcatcaacatgggaggagggcatgttgtaattggtctatacgctcctccatcacttccctagttccctgtggcataaccgggaacccgttggatatttggtcattatttgatatattttaatccagaaaatatgatactaaacataacttgtgtataatatggtggtctagtgatagtgctaaatatgaatatgctaagaacaataataacatcatttagtaacatgtttaacattgaaataaagagaacatacctaaaaaatacttcagatccaatagcggtgttggtgttgatgttcctaatgtcggtgacaaagcagagagcagttgcacaaagaatgcgtacccaaaaacttgatcgtccacctaagtactatatatggtggatacacttccggaggcctgcttgtcccgaatacctgtgcgtgcaggtacttaggaccggggattaccgaagtaacttagaagcataagaacatgatgtatctaccagagagaaccagaacaagacgaaggaacatagagcttatgtgcgggagaattctttcggacaagagacagtgtttttctacctccttagggaatgagaacagacaccggtagtggaagaggtatatgttgtttactcctcttgatggaagagagagcttatgtgctagagagttctttcggacgagagacatagtgtttttctaccttgtgggaaaggagaacagccggtagtagaaggcggcaaggggtacgtgttgtttactccttttgatggcctccgcatgatatagtggtaacatccgtatgtgagaaaacgaacagcccgccgctccgtctccgtcacatgccctgcgtgggagtctgacaatccatccatcacctcacccagttaataggtgcactcaaattatagactatttaagttgaggttttttttcattgattttcaatgcgatattaatctggacatgggatttattagaattaatctggacatggtcattttaattctaacaaacccgacattgtctgcctgggacagagtatagccttaggatgaaataaaagtgtattgaacatatgtaaataaaactcttcatgaggtttttagtaataattgtatcctttcggattatatggaaaatgacagcgcaatggatctgatctggtcatacgatacatcttgagcaagtgtagagggttggtcaactgtgtatataaataataattcgttgcatctatccacgagcctttcgttgccggcgactccatcgcttcgttgcgttgtttgggcgtggccggagttgttcaactgctgctgtcaactgtaaccctcctgtgagttcttcgataccttttgagctcggatttgttcgcgacggttttttgattgagtacggattcaggcttgcttaactaaattgtgtcggcgtaaagagatcccgatctagctatatgaccaaattagctagtatatacttcgctttgcactcatattgtctctggtcttgattgctaaataattttggcagtacctttttatttgcggtgaaattctgatagtagtatttcttttgcttctcgtaggcaaaacttatatcctgttatccatttttcacccagttctccctgaggaattaatcaggaccaaacatggcggaggcgagcagtagcacccaccggcgtcgatcgcaagctcagatcagcaagatagcccttcggtcagacgtgtggaatcacttcacccgtttcaccgacggagatgggcgagccaaagcacggtgtaagcactgcccccaggtgctcggcgcagaaaccaagagcggcacgagtaccctttgggcgcactggaatcgccacgagcaacgcgaagaaataccaggcgaagaatcaccacaacagacaccaccaccgctgccgcctgctggccctgaagaggcggccagaggagaccttgctcggatgatcgcgttgcacgggtacaacccgtcagtcgtcaaggacgactatttcagaagcttcttgtgccgtctcaaccccgagtacgaggtgccctcgcgcctcgccatcgaggagatgtgtgatgctatctttgatgaaacaatgaagggcctcttctctaaactacacgatgttcctggaaaggtcagtatagcagtgggtacagttagaaccatccgagggaatatgttgtatacagcgtgccacttcattgatgatcaatggaatcttcataagataatcatggatgtttacgcggatgtaccttttcttaactaccatggcccattgttgggagttgatgaagtttgtctcgatcgggatctctcccgtgatatttccattgacaaagttatggttcgttttaaagcgcgtgaggttttacataatctgttcatgatgatatgggaaacaaaggggaacgatattaaccttgaatatgaactgaggaatgaaatagaGgataacccattcaaaatcaatccaaacaggagacagctattttataccacctacatggacaacgtgattcactcgattgctagactgcttgttatggatccagaattcaaagatgactatattatctctgacttggagaatttacatttgactagacaagagcgccatcagcttctttcacaacttggtctagattatgacctatgggcatatgatgaaaagtggtactcggaatactgttcgatggaagttcttcgcaagaaaggctctgcaataacgaatacagtatttgcagaactattgtgtatgctttggggagaaatataccgttccattcaaaggatttctgcacccgattgtcccacttcatcaaatctttgtctcatagagttgtttaagctgagggaagtttttaagcatcaactagcacaggcaagtggagagaatgcaattgcttacaatgaatttaatggctgttttggcgccgaagatcacaaagatgttgcagacgttcttacagaagcaatggtcgctatagacaaggccatacaagattcctacccggtctggtctataccacttgtactggatccccggtacaaactcgcacgcacaaaatttattttccaaacagcctttagcaccgaggctgcagccgactacatctctgaggtaacacgaaatatcactgagctatactctgactatgttgaagatgatgatagtaccatgaatgcggtggcagttggcagcactgatccactgcaagaagcatgggatgagcaccgccgagcagaagcccaaacagacctcgaccgttatctgaaagatgagctagtccatgatccagcacaaggttttgatattctcagctggtggaaggttcacgggtcagttctctatccaagggtggctcagatggcgagggacgctttggcaatgcccacatgcagtaagccttctgctgagcaactcgcacacatcacgagcatcgttcgcggttactccaaggaaggattcgtgtaatgtcacagcgtatttagcattgacaagctccgggtgcatcgatgtcagattatgatcgagctgatgatcttgagtgctgatatttatatttcactttcctgtaattaactttttgaactatgcaagctttgcagcgccaaactctgtctgcctctgtcatgtttcttcattatattttactgttcaagttcaacaattttcagagttctctgttttccaccgaaagtccgaaaccgagcaacgagagaacgatttgcacaattgatccacctgtatgctcaagtgttattcttcatcagatacttcaatctggctagctccttgttatcttttccccaaatatccttgctattgtagtacgtgttgtcgacgacgacgacgacgccatgtgcgcggcgctggtggcggagctgcgtgagctgagcgagcgcgtggcggacgagcgggagtacgcgcagacggggcgcgcgtgcgtgctcgccggcatgagctcgcacgggcagcagcgcgcctcgtcggtgcagctcgccaaggggagttccgtgtacgggtgttcgtccgcgttcgcgacaccggagatgcagaggatggagaagctctcggtgattttaccgccgtcttctttcactcagacgctgagcaaaatgccatag
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| CDS seq | atggcagctggcacgatggccatgggtggcatccggtgtcccgtctgcttcgccgccatggccgccggccaagccatcttcaccgccgagtgctcccacaccttccacctccgctgcgtccccggcggcgccgccgcctgccccgtctgcgccacgccatggcgcgacgccccgtcgccgctcacgacctcctccatccccgccgcgtacgacgacgacgacccggtggagccggtggcgacggcggcgcgcaacagcagcggcggcggcggcggcgtgctggtgctcaagacgcactgcgagtacccggcgctctcgcgcggcgccgcgcgcgacggcttcgccgtgctggtgcacgccaaggcgcccgcggcggcggccgaggcggcggggcgcgcgccgctggacctggtcacggtgctcgacgtcagcacgagcatgaccggggacaagctggcgctggacgggaaggcgacggccaagcgcgcggtggacgccctcgtcgcgaacgggaacaccaacatccgcgacggcctcgacgtggacgccaaggtgctcgacggccgccgccacaccgacgccgtcgccagcgtcatcctcctctccgacggccaagacaaccagaccatgggttaccgtggccgcttccacatgacggatttcaaggcagcggcgaccagctacgacgtcctcgtgccgccgtctttcacgcgcgccggcggcggcgagcggtgcgcgccggtgcacgcgttcgggttcggcaccgaccacgacgcggcggccatgcacagcatctcggagatcacgggtggcaccttctccttcatcgagaacctcgccgtcatccaggacacgttcgcgcggtgcatcggcgggctcctctccgtcgccgcgcagaatgcgcgcatctccgtcgagtgcctggaccccggcgtgcgcgtccgggcggtcaagtccggccgctacgagagccgcatcgacgcggagggccgcgccgccacggtggacgtcggcgagctctacgccgacgaggagcgccgcttcctgctcctccttgacgtgcctcgagccgacggcgacgccgccgtcgccacgcgcctcgccagcgtgcgctgcacgtaccgggacacggcgacggagcagtcggtggacgtggccggcgaggaagacgccgtggtcctccgccccgccgtcgcgacgggcgtggcgccgtccatggaggttgagcttgagcgcgagcgcgtccgcctcgaggcggcggacgacatcgcgctggcgcgcgcggcggccgagcggggcgcctacggcgaggcggcaaggatcctcgacgcgaggcgggaggcgctgagcaggtcggcgccggcggcgtccggcgacgccatgtgcgcggcgctggtggcggagctgcgggagctgagcgagcgcgtggcggacgagcaggagtacgcgcagacggggcgcgcgtgcgtgctcgccggcatgagctcgcacgggcagcagcgcgcctcgtcggtgcagctaggggagctccgtgtacgggtgttcgtccgtgttcgcgacaccggagatgcagaggatggagaagctctcggtgattttgctagcacccaccggcgtcgatcgcaagctcagatcagcaagatagcccttcggtcagacgtgtggaatcacttcacccgtttcaccgacggagatgggcgagccaaagcacggtgtaagcactgcccccaggtgctcggcgcagaaaccaagagcggcacgagtaccctttgggcgcactggaatcgccacgagcaacgcgaagaaataccaggcgaagaatcaccacaacagacaccaccaccgctgccgcctgctggccctgaagaggcggccagaggagaccttgctcggatgatcgcgttgcacgggtacaacccgtcagtcgtcaaggacgactatttcagaagcttcttgtgcccgcgtgaggttttacataatctgttcatgatgatatgggaaacaaaggggaacgatattaaccttgaatatgaactgaggaatgaaatagaGgataacccattcaaaatcaatccaaacaggagacagctattttataccacctacatggacaacgtgattcactcgattgctagactgcttgttatggatccagaattcaaagatgactatattatctctgacttggagaatttacatttgactagacaagagcgccatcagcttctttcacaacttggtctagattatgacctatgggcatatgatgaaaagtggtactcggaatactgttcgatggaagttcttcgcaagaaaggctctgcaataacgaatacagtatttgcagaactattgtgtatgctttggggagaaatataccgttccattcaaaggatttctgcacccgattgtcccacttcatcaaatctttgtctcatagagttgtttaagctgagggaagtttttaagcatcaactagcacaggcaagtggagagaatgcaattgcttacaatgaatttaatggctgttttggcgccgaagatcacaaagatgttgcagacgttcttacagaagcaatggtcgctatagacaaggccatacaagattcctacccggtctggtctataccacttgtactggatccccggtacaaactcgcacgcacaaaatttattttccaaacagcctttagcaccgaggctgcagccgactacatctctgaggtaacacgaaatatcactgagctatactctgactatgttgaagatgatgatagtaccatgaatgcggtggcagttggcagcactgatccactgcaagaagcatgggatgagcaccgccgagcagaagcccaaacagacctcgaccgttatctgaaagatgagctagtccatgatccagcacaaggttttgatattctcagctggtggaaggttcacgggtcagttctctatccaagggtggctcagatggcgagggacgctttggcaatgcccacatgcatacgtgttgtcgacgacgacgacgacgccatgtgcgcggcgctggtggcggagctgcgtgagctgagcgagcgcgtggcggacgagcgggagtacgcgcagacggggcgcgcgtgcgtgctcgccggcatgagctcgcacgggcagcagcgcgcctcgtcggtgcagctcgccaaggggagttccgtgtacgggtgttcgtccgcgttcgcgacaccggagatgcagaggatggagaagctctcggtgattttaccgccgtcttctttcactcagacgctgagcaaaatgccatag
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| Protein seq | MAAGTMAMGGIRCPVCFAAMAAGQAIFTAECSHTFHLRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLVLKTHCEYPALSRGAARDGFAVLVHAKAPAAAAEAAGRAPLDLVTVLDVSTSMTGDKLALDGKATAKRAVDALVANGNTNIRDGLDVDAKVLDGRRHTDAVASVILLSDGQDNQTMGYRGRFHMTDFKAAATSYDVLVPPSFTRAGGGERCAPVHAFGFGTDHDAAAMHSISEITGGTFSFIENLAVIQDTFARCIGGLLSVAAQNARISVECLDPGVRVRAVKSGRYESRIDAEGRAATVDVGELYADEERRFLLLLDVPRADGDAAVATRLASVRCTYRDTATEQSVDVAGEEDAVVLRPAVATGVAPSMEVELERERVRLEAADDIALARAAAERGAYGEAARILDARREALSRSAPAASGDAMCAALVAELRELSERVADEQEYAQTGRACVLAGMSSHGQQRASSVQLGELRVRVFVRVRDTGDAEDGEALGDFASTHRRRSQAQISKIALRSDVWNHFTRFTDGDGRAKARCKHCPQVLGAETKSGTSTLWAHWNRHEQREEIPGEESPQQTPPPLPPAGPEEAARGDLARMIALHGYNPSVVKDDYFRSFLCPREVLHNLFMMIWETKGNDINLEYELRNEIEDNPFKINPNRRQLFYTTYMDNVIHSIARLLVMDPEFKDDYIISDLENLHLTRQERHQLLSQLGLDYDLWAYDEKWYSEYCSMEVLRKKGSAITNTVFAELLCMLWGEIYRSIQRISAPDCPTSSNLCLIELFKLREVFKHQLAQASGENAIAYNEFNGCFGAEDHKDVADVLTEAMVAIDKAIQDSYPVWSIPLVLDPRYKLARTKFIFQTAFSTEAAADYISEVTRNITELYSDYVEDDDSTMNAVAVGSTDPLQEAWDEHRRAEAQTDLDRYLKDELVHDPAQGFDILSWWKVHGSVLYPRVAQMARDALAMPTCIRVVDDDDDAMCAALVAELRELSERVADEREYAQTGRACVLAGMSSHGQQRASSVQLAKGSSVYGCSSAFATPEMQRMEKLSVILPPSSFTQTLSKMP |
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| Function | Probable E3 ubiquitin-protein ligase WAVH2 [UniProtKB/Swiss-Prot:Q0WQX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0006520 | OsKeNa_12g0006520.01 | Chr12 | 5342067 | 5349667 | + | NAM | ||
| CDS seq | atggcagctggcacgatggccatgggtggcatccggtgtcccgtctgcttcgccgccatggccgccggccaagccatcttcaccgccgagtgctcccacaccttccacctccgctgcgtccccggcggcgccgccgcctgccccgtctgcgccacgccatggcgcgacgccccgtcgccgctcacgacctcctccatccccgccgcgtacgacgacgacgacccggtggagccggtggcgacggcggcgcgcaacagcagcggcggcggcggcggcgtgctggtgctcaagacgcactgcgagtacccggcgctctcgcgcggcgccgcgcgcgacggcttcgccgtgctggtgcacgccaaggcgcccgcggcggcggccgaggcggcggggcgcgcgccgctggacctggtcacggtgctcgacgtcagcacgagcatgaccggggacaagctggcgctggacgggaaggcgacggccaagcgcgcggtggacgccctcgtcgcgaacgggaacaccaacatccgcgacggcctcgacgtggacgccaaggtgctcgacggccgccgccacaccgacgccgtcgccagcgtcatcctcctctccgacggccaagacaaccagaccatgggttaccgtggccgcttccacatgacggatttcaaggcagcggcgaccagctacgacgtcctcgtgccgccgtctttcacgcgcgccggcggcggcgagcggtgcgcgccggtgcacgcgttcgggttcggcaccgaccacgacgcggcggccatgcacagcatctcggagatcacgggtggcaccttctccttcatcgagaacctcgccgtcatccaggacacgttcgcgcggtgcatcggcgggctcctctccgtcgccgcgcagaatgcgcgcatctccgtcgagtgcctggaccccggcgtgcgcgtccgggcggtcaagtccggccgctacgagagccgcatcgacgcggagggccgcgccgccacggtggacgtcggcgagctctacgccgacgaggagcgccgcttcctgctcctccttgacgtgcctcgagccgacggcgacgccgccgtcgccacgcgcctcgccagcgtgcgctgcacgtaccgggacacggcgacggagcagtcggtggacgtggccggcgaggaagacgccgtggtcctccgccccgccgtcgcgacgggcgtggcgccgtccatggaggttgagcttgagcgcgagcgcgtccgcctcgaggcggcggacgacatcgcgctggcgcgcgcggcggccgagcggggcgcctacggcgaggcggcaaggatcctcgacgcgaggcgggaggcgctgagcaggtcggcgccggcggcgtccggcgacgccatgtgcgcggcgctggtggcggagctgcgggagctgagcgagcgcgtggcggacgagcaggagtacgcgcagacggggcgcgcgtgcgtgctcgccggcatgagctcgcacgggcagcagcgcgcctcgtcggtgcagctaggggagctccgtgtacgggtgttcgtccgtgttcgcgacaccggagatgcagaggatggagaagctctcggtgattttgctagcacccaccggcgtcgatcgcaagctcagatcagcaagatagcccttcggtcagacgtgtggaatcacttcacccgtttcaccgacggagatgggcgagccaaagcacggtgtaagcactgcccccaggtgctcggcgcagaaaccaagagcggcacgagtaccctttgggcgcactggaatcgccacgagcaacgcgaagaaataccaggcgaagaatcaccacaacagacaccaccaccgctgccgcctgctggccctgaagaggcggccagaggagaccttgctcggatgatcgcgttgcacgggtacaacccgtcagtcgtcaaggacgactatttcagaagcttcttgtgcccgcgtgaggttttacataatctgttcatgatgatatgggaaacaaaggggaacgatattaaccttgaatatgaactgaggaatgaaatagaGgataacccattcaaaatcaatccaaacaggagacagctattttataccacctacatggacaacgtgattcactcgattgctagactgcttgttatggatccagaattcaaagatgactatattatctctgacttggagaatttacatttgactagacaagagcgccatcagcttctttcacaacttggtctagattatgacctatgggcatatgatgaaaagtggtactcggaatactgttcgatggaagttcttcgcaagaaaggctctgcaataacgaatacagtatttgcagaactattgtgtatgctttggggagaaatataccgttccattcaaaggatttctgcacccgattgtcccacttcatcaaatctttgtctcatagagttgtttaagctgagggaagtttttaagcatcaactagcacaggcaagtggagagaatgcaattgcttacaatgaatttaatggctgttttggcgccgaagatcacaaagatgttgcagacgttcttacagaagcaatggtcgctatagacaaggccatacaagattcctacccggtctggtctataccacttgtactggatccccggtacaaactcgcacgcacaaaatttattttccaaacagcctttagcaccgaggctgcagccgactacatctctgaggtaacacgaaatatcactgagctatactctgactatgttgaagatgatgatagtaccatgaatgcggtggcagttggcagcactgatccactgcaagaagcatgggatgagcaccgccgagcagaagcccaaacagacctcgaccgttatctgaaagatgagctagtccatgatccagcacaaggttttgatattctcagctggtggaaggttcacgggtcagttctctatccaagggtggctcagatggcgagggacgctttggcaatgcccacatgcatacgtgttgtcgacgacgacgacgacgccatgtgcgcggcgctggtggcggagctgcgtgagctgagcgagcgcgtggcggacgagcgggagtacgcgcagacggggcgcgcgtgcgtgctcgccggcatgagctcgcacgggcagcagcgcgcctcgtcggtgcagctcgccaaggggagttccgtgtacgggtgttcgtccgcgttcgcgacaccggagatgcagaggatggagaagctctcggtgattttaccgccgtcttctttcactcagacgctgagcaaaatgccatag
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| Protein seq | MAAGTMAMGGIRCPVCFAAMAAGQAIFTAECSHTFHLRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLVLKTHCEYPALSRGAARDGFAVLVHAKAPAAAAEAAGRAPLDLVTVLDVSTSMTGDKLALDGKATAKRAVDALVANGNTNIRDGLDVDAKVLDGRRHTDAVASVILLSDGQDNQTMGYRGRFHMTDFKAAATSYDVLVPPSFTRAGGGERCAPVHAFGFGTDHDAAAMHSISEITGGTFSFIENLAVIQDTFARCIGGLLSVAAQNARISVECLDPGVRVRAVKSGRYESRIDAEGRAATVDVGELYADEERRFLLLLDVPRADGDAAVATRLASVRCTYRDTATEQSVDVAGEEDAVVLRPAVATGVAPSMEVELERERVRLEAADDIALARAAAERGAYGEAARILDARREALSRSAPAASGDAMCAALVAELRELSERVADEQEYAQTGRACVLAGMSSHGQQRASSVQLGELRVRVFVRVRDTGDAEDGEALGDFASTHRRRSQAQISKIALRSDVWNHFTRFTDGDGRAKARCKHCPQVLGAETKSGTSTLWAHWNRHEQREEIPGEESPQQTPPPLPPAGPEEAARGDLARMIALHGYNPSVVKDDYFRSFLCPREVLHNLFMMIWETKGNDINLEYELRNEIEDNPFKINPNRRQLFYTTYMDNVIHSIARLLVMDPEFKDDYIISDLENLHLTRQERHQLLSQLGLDYDLWAYDEKWYSEYCSMEVLRKKGSAITNTVFAELLCMLWGEIYRSIQRISAPDCPTSSNLCLIELFKLREVFKHQLAQASGENAIAYNEFNGCFGAEDHKDVADVLTEAMVAIDKAIQDSYPVWSIPLVLDPRYKLARTKFIFQTAFSTEAAADYISEVTRNITELYSDYVEDDDSTMNAVAVGSTDPLQEAWDEHRRAEAQTDLDRYLKDELVHDPAQGFDILSWWKVHGSVLYPRVAQMARDALAMPTCIRVVDDDDDAMCAALVAELRELSERVADEREYAQTGRACVLAGMSSHGQQRASSVQLAKGSSVYGCSSAFATPEMQRMEKLSVILPPSSFTQTLSKMP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0006520 | OsKeNa_12g0006520.02 | Chr12 | 5341970 | 5344186 | + | IsoSeq | ||
| CDS seq | atgggccatggcagctggcacgatggccatgggtggcatccggtgtcccgtctgcttcgccgccatggccgccggccaagccatcttcaccgccgagtgctcccacaccttccacctccgctgcgtccccggcggcgccgccgcctgccccgtctgcgccacgccatggcgcgacgccccgtcgccgctcacgacctcctccatccccgccgcgtacgacgacgacgacccggtggagccggtggcgacggcggcgcgcaacagcagcggcggcggcggcggcgtgctggtgctcaagacgcactgcgagtacccggcgctctcgcgcggcgccgcgcgcgacggcttcgccgtgctggtgcacgccaaggcgcccgcggcggcggccgaggcggcggggcgcgcgccgctggacctggtcacggtgctcgacgtcagcacgagcatgaccggggacaagctggcgctggtgaagcgcgccatggggttcgtcatcgacagcctcggcgccgccgaccgcctcagcgtcgtcgccttcgccacgccgacgcgcgccgggtgctccgcggctcc
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| Protein seq | MGHGSWHDGHGWHPVSRLLRRHGRRPSHLHRRVLPHLPPPLRPRRRRRLPRLRHAMARRPVAAHDLLHPRRVRRRRPGGAGGDGGAQQQRRRRRRAGAQDALRVPGALARRRARRLRRAGARQGARGGGRGGGARAAGPGHGARRQHEHDRGQAGAGEARHGVRHRQPRRRRPPQRRRLRHADARRVLRGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0203500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0203500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006450 | RBH | 0.0 | 2.627479 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006530 | RBH | 0.0 | 1.191219 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006430 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0105900 | RBH | 0.026001 | 0 | 0.013867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0110600 | RBH | 0.010964 | 0 | 0.032147 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012510 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006290 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
